EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000005594 (Gene tree)
Gene ID: 100702580
Gene Symbol: smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 18725 bases
Position: chrGL831384.1:385020-403744
Accession: 100702580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000007039	EST1	PF10374.9	8.5e-14	1	1
ENSONIP00000007040	EST1	PF10374.9	5.6e-13	1	1
ENSONIP00000007039	EST1_DNA_bind	PF10373.9	3.4e-57	1	1
ENSONIP00000007040	EST1_DNA_bind	PF10373.9	2.5e-56	1	1
ENSONIP00000007040	PIN_4	PF13638.6	8.1e-23	1	1
ENSONIP00000007039	PIN_4	PF13638.6	3.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000007045	-	4275	-	ENSONIP00000007040	1424 (aa)	-	I3JDV0
ENSONIT00000007044	-	8441	-	ENSONIP00000007039	1649 (aa)	XP_005462391	I3JDU9

Gene Model

Click here to download ENSONIG00000005594's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000005594's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000005594	smg6	100	51.667	ENSG00000070366	SMG6	100	58.824	Homo_sapiens
ENSONIG00000005594	smg6	100	83.050	ENSAPOG00000019448	smg6	100	80.693	Acanthochromis_polyacanthus
ENSONIG00000005594	smg6	100	51.427	ENSAMEG00000007632	SMG6	100	50.596	Ailuropoda_melanoleuca
ENSONIG00000005594	smg6	93	85.835	ENSACIG00000012997	smg6	100	85.185	Amphilophus_citrinellus
ENSONIG00000005594	smg6	100	81.470	ENSAOCG00000002630	smg6	100	81.470	Amphiprion_ocellaris
ENSONIG00000005594	smg6	100	83.437	ENSAPEG00000019101	smg6	100	81.351	Amphiprion_percula
ENSONIG00000005594	smg6	100	79.234	ENSATEG00000006483	smg6	100	75.492	Anabas_testudineus
ENSONIG00000005594	smg6	86	46.245	ENSACAG00000011783	SMG6	99	45.735	Anolis_carolinensis
ENSONIG00000005594	smg6	100	52.000	ENSANAG00000035760	SMG6	100	51.237	Aotus_nancymaae
ENSONIG00000005594	smg6	100	96.725	ENSACLG00000005288	smg6	100	96.924	Astatotilapia_calliptera
ENSONIG00000005594	smg6	74	68.293	ENSAMXG00000017326	smg6	88	68.173	Astyanax_mexicanus
ENSONIG00000005594	smg6	100	51.731	ENSBTAG00000000267	SMG6	100	51.263	Bos_taurus
ENSONIG00000005594	smg6	100	51.939	ENSCJAG00000001820	SMG6	100	51.275	Callithrix_jacchus
ENSONIG00000005594	smg6	100	52.099	ENSCAFG00000019260	SMG6	100	51.037	Canis_familiaris
ENSONIG00000005594	smg6	100	52.099	ENSCAFG00020009770	SMG6	100	51.037	Canis_lupus_dingo
ENSONIG00000005594	smg6	100	51.901	ENSCHIG00000021998	SMG6	100	51.436	Capra_hircus
ENSONIG00000005594	smg6	100	51.706	ENSTSYG00000003406	SMG6	100	58.272	Carlito_syrichta
ENSONIG00000005594	smg6	89	53.211	ENSCAPG00000016197	SMG6	98	52.995	Cavia_aperea
ENSONIG00000005594	smg6	100	51.340	ENSCPOG00000014878	SMG6	100	50.499	Cavia_porcellus
ENSONIG00000005594	smg6	100	52.235	ENSCCAG00000035801	SMG6	100	51.340	Cebus_capucinus
ENSONIG00000005594	smg6	100	51.867	ENSCATG00000031956	SMG6	100	50.905	Cercocebus_atys
ENSONIG00000005594	smg6	100	51.634	ENSCLAG00000006748	SMG6	100	51.033	Chinchilla_lanigera
ENSONIG00000005594	smg6	100	52.032	ENSCSAG00000013800	SMG6	100	51.071	Chlorocebus_sabaeus
ENSONIG00000005594	smg6	100	50.696	ENSCPBG00000020369	SMG6	100	49.967	Chrysemys_picta_bellii
ENSONIG00000005594	smg6	97	52.476	ENSCANG00000031764	SMG6	100	59.191	Colobus_angolensis_palliatus
ENSONIG00000005594	smg6	53	44.689	ENSCGRG00001019595	Smg6	97	43.704	Cricetulus_griseus_chok1gshd
ENSONIG00000005594	smg6	97	48.238	ENSCGRG00000007782	Smg6	99	47.811	Cricetulus_griseus_crigri
ENSONIG00000005594	smg6	100	73.773	ENSCSEG00000012757	smg6	100	69.005	Cynoglossus_semilaevis
ENSONIG00000005594	smg6	99	73.479	ENSCVAG00000012789	smg6	100	68.456	Cyprinodon_variegatus
ENSONIG00000005594	smg6	100	65.277	ENSDARG00000100481	smg6	94	64.791	Danio_rerio
ENSONIG00000005594	smg6	100	51.501	ENSDNOG00000048283	SMG6	100	50.670	Dasypus_novemcinctus
ENSONIG00000005594	smg6	100	48.269	ENSDORG00000016614	Smg6	100	47.695	Dipodomys_ordii
ENSONIG00000005594	smg6	86	87.500	ENSETEG00000016790	SMG6	87	87.500	Echinops_telfairi
ENSONIG00000005594	smg6	70	46.660	ENSEBUG00000005059	smg6	65	45.857	Eptatretus_burgeri
ENSONIG00000005594	smg6	99	51.919	ENSEASG00005009318	SMG6	99	50.805	Equus_asinus_asinus
ENSONIG00000005594	smg6	99	51.987	ENSECAG00000006519	SMG6	99	50.872	Equus_caballus
ENSONIG00000005594	smg6	100	44.048	ENSEEUG00000003493	SMG6	96	58.352	Erinaceus_europaeus
ENSONIG00000005594	smg6	100	63.542	ENSELUG00000005934	smg6	98	68.453	Esox_lucius
ENSONIG00000005594	smg6	100	51.773	ENSFCAG00000028817	SMG6	100	50.768	Felis_catus
ENSONIG00000005594	smg6	97	51.544	ENSFALG00000006538	SMG6	99	50.821	Ficedula_albicollis
ENSONIG00000005594	smg6	100	51.802	ENSFDAG00000015106	SMG6	100	50.665	Fukomys_damarensis
ENSONIG00000005594	smg6	100	74.189	ENSFHEG00000013282	smg6	100	68.701	Fundulus_heteroclitus
ENSONIG00000005594	smg6	62	78.947	ENSGMOG00000019077	smg6	67	78.947	Gadus_morhua
ENSONIG00000005594	smg6	100	51.832	ENSGALG00000003108	SMG6	98	50.628	Gallus_gallus
ENSONIG00000005594	smg6	99	75.058	ENSGAFG00000000379	smg6	100	68.884	Gambusia_affinis
ENSONIG00000005594	smg6	91	78.362	ENSGACG00000020521	smg6	99	80.000	Gasterosteus_aculeatus
ENSONIG00000005594	smg6	97	50.853	ENSGAGG00000025617	SMG6	99	50.204	Gopherus_agassizii
ENSONIG00000005594	smg6	100	52.035	ENSGGOG00000017156	SMG6	100	51.206	Gorilla_gorilla
ENSONIG00000005594	smg6	100	96.301	ENSHBUG00000021311	smg6	100	96.301	Haplochromis_burtoni
ENSONIG00000005594	smg6	100	51.132	ENSHGLG00000012882	SMG6	100	50.331	Heterocephalus_glaber_female
ENSONIG00000005594	smg6	100	51.297	ENSHGLG00100017815	SMG6	100	50.595	Heterocephalus_glaber_male
ENSONIG00000005594	smg6	73	70.356	ENSHCOG00000008761	smg6	83	70.038	Hippocampus_comes
ENSONIG00000005594	smg6	100	61.975	ENSIPUG00000012493	smg6	92	62.709	Ictalurus_punctatus
ENSONIG00000005594	smg6	100	51.568	ENSSTOG00000028127	SMG6	100	51.007	Ictidomys_tridecemlineatus
ENSONIG00000005594	smg6	78	48.302	ENSJJAG00000015367	Smg6	95	46.750	Jaculus_jaculus
ENSONIG00000005594	smg6	99	77.399	ENSKMAG00000000279	smg6	100	72.292	Kryptolebias_marmoratus
ENSONIG00000005594	smg6	100	79.147	ENSLBEG00000002184	smg6	100	74.612	Labrus_bergylta
ENSONIG00000005594	smg6	53	44.790	ENSLACG00000000806	-	97	44.832	Latimeria_chalumnae
ENSONIG00000005594	smg6	76	66.395	ENSLOCG00000006448	smg6	99	57.454	Lepisosteus_oculatus
ENSONIG00000005594	smg6	100	51.469	ENSLAFG00000001261	SMG6	100	50.737	Loxodonta_africana
ENSONIG00000005594	smg6	100	52.099	ENSMFAG00000003394	SMG6	100	51.138	Macaca_fascicularis
ENSONIG00000005594	smg6	100	52.032	ENSMMUG00000023161	SMG6	100	51.071	Macaca_mulatta
ENSONIG00000005594	smg6	100	50.401	ENSMNEG00000044592	SMG6	100	49.262	Macaca_nemestrina
ENSONIG00000005594	smg6	92	60.568	ENSMLEG00000029353	SMG6	99	60.391	Mandrillus_leucophaeus
ENSONIG00000005594	smg6	100	81.000	ENSMAMG00000020119	smg6	100	77.542	Mastacembelus_armatus
ENSONIG00000005594	smg6	100	96.543	ENSMZEG00005024736	smg6	100	96.543	Maylandia_zebra
ENSONIG00000005594	smg6	70	49.436	ENSMGAG00000005401	-	97	47.936	Meleagris_gallopavo
ENSONIG00000005594	smg6	100	51.738	ENSMICG00000012913	SMG6	100	51.040	Microcebus_murinus
ENSONIG00000005594	smg6	100	69.458	ENSMMOG00000010883	smg6	100	68.614	Mola_mola
ENSONIG00000005594	smg6	100	52.151	ENSMODG00000010622	SMG6	100	51.205	Monodelphis_domestica
ENSONIG00000005594	smg6	99	81.026	ENSMALG00000001106	smg6	100	76.703	Monopterus_albus
ENSONIG00000005594	smg6	100	51.335	MGP_CAROLIEiJ_G0016729	Smg6	98	64.481	Mus_caroli
ENSONIG00000005594	smg6	100	51.535	ENSMUSG00000038290	Smg6	96	65.642	Mus_musculus
ENSONIG00000005594	smg6	100	51.469	MGP_PahariEiJ_G0017866	Smg6	96	65.363	Mus_pahari
ENSONIG00000005594	smg6	100	51.303	MGP_SPRETEiJ_G0017572	Smg6	96	65.363	Mus_spretus
ENSONIG00000005594	smg6	100	51.805	ENSMPUG00000013046	SMG6	100	50.496	Mustela_putorius_furo
ENSONIG00000005594	smg6	100	51.944	ENSMLUG00000005739	SMG6	100	50.937	Myotis_lucifugus
ENSONIG00000005594	smg6	97	51.241	ENSNGAG00000007287	Smg6	99	50.514	Nannospalax_galili
ENSONIG00000005594	smg6	98	92.040	ENSNBRG00000009511	smg6	99	94.694	Neolamprologus_brichardi
ENSONIG00000005594	smg6	98	52.150	ENSNLEG00000017171	SMG6	100	58.824	Nomascus_leucogenys
ENSONIG00000005594	smg6	90	54.210	ENSMEUG00000015804	SMG6	92	53.107	Notamacropus_eugenii
ENSONIG00000005594	smg6	58	63.243	ENSOPRG00000000579	SMG6	79	63.441	Ochotona_princeps
ENSONIG00000005594	smg6	100	46.467	ENSODEG00000008038	SMG6	100	45.060	Octodon_degus
ENSONIG00000005594	smg6	100	51.408	ENSOCUG00000013018	SMG6	100	50.907	Oryctolagus_cuniculus
ENSONIG00000005594	smg6	100	72.769	ENSORLG00000003317	smg6	99	70.830	Oryzias_latipes
ENSONIG00000005594	smg6	100	72.894	ENSORLG00020015343	smg6	100	68.750	Oryzias_latipes_hni
ENSONIG00000005594	smg6	100	72.859	ENSORLG00015020454	smg6	100	69.148	Oryzias_latipes_hsok
ENSONIG00000005594	smg6	100	74.120	ENSOMEG00000010838	smg6	100	68.889	Oryzias_melastigma
ENSONIG00000005594	smg6	100	51.800	ENSOGAG00000004483	SMG6	100	50.527	Otolemur_garnettii
ENSONIG00000005594	smg6	99	51.509	ENSOARG00000015076	SMG6	99	51.722	Ovis_aries
ENSONIG00000005594	smg6	100	52.035	ENSPPAG00000043296	SMG6	100	51.072	Pan_paniscus
ENSONIG00000005594	smg6	100	51.773	ENSPPRG00000014581	SMG6	100	50.768	Panthera_pardus
ENSONIG00000005594	smg6	90	54.707	ENSPTIG00000008925	SMG6	100	59.007	Panthera_tigris_altaica
ENSONIG00000005594	smg6	100	52.064	ENSPTRG00000008544	SMG6	100	58.824	Pan_troglodytes
ENSONIG00000005594	smg6	100	52.032	ENSPANG00000024588	SMG6	100	51.071	Papio_anubis
ENSONIG00000005594	smg6	88	49.664	ENSPSIG00000006660	SMG6	97	47.665	Pelodiscus_sinensis
ENSONIG00000005594	smg6	96	78.820	ENSPMGG00000000844	smg6	99	80.137	Periophthalmus_magnuspinnatus
ENSONIG00000005594	smg6	100	51.535	ENSPEMG00000020707	Smg6	100	50.738	Peromyscus_maniculatus_bairdii
ENSONIG00000005594	smg6	99	76.622	ENSPFOG00000012035	smg6	99	73.830	Poecilia_formosa
ENSONIG00000005594	smg6	99	76.250	ENSPLAG00000017660	smg6	100	70.197	Poecilia_latipinna
ENSONIG00000005594	smg6	99	76.622	ENSPMEG00000000258	smg6	100	70.138	Poecilia_mexicana
ENSONIG00000005594	smg6	100	75.956	ENSPREG00000010066	smg6	100	69.934	Poecilia_reticulata
ENSONIG00000005594	smg6	100	48.834	ENSPPYG00000007790	SMG6	100	47.820	Pongo_abelii
ENSONIG00000005594	smg6	96	60.641	ENSPCAG00000000552	SMG6	96	60.412	Procavia_capensis
ENSONIG00000005594	smg6	100	51.703	ENSPCOG00000020925	SMG6	100	51.072	Propithecus_coquereli
ENSONIG00000005594	smg6	83	53.306	ENSPVAG00000002159	SMG6	72	56.554	Pteropus_vampyrus
ENSONIG00000005594	smg6	93	91.580	ENSPNYG00000024151	smg6	99	94.157	Pundamilia_nyererei
ENSONIG00000005594	smg6	100	59.692	ENSPNAG00000015480	smg6	98	71.127	Pygocentrus_nattereri
ENSONIG00000005594	smg6	100	51.231	ENSRNOG00000003041	Smg6	97	65.041	Rattus_norvegicus
ENSONIG00000005594	smg6	100	51.971	ENSRBIG00000024746	SMG6	100	50.898	Rhinopithecus_bieti
ENSONIG00000005594	smg6	100	51.971	ENSRROG00000030423	SMG6	100	59.191	Rhinopithecus_roxellana
ENSONIG00000005594	smg6	100	52.003	ENSSBOG00000022518	SMG6	100	49.899	Saimiri_boliviensis_boliviensis
ENSONIG00000005594	smg6	97	52.180	ENSSHAG00000010045	SMG6	98	50.675	Sarcophilus_harrisii
ENSONIG00000005594	smg6	93	60.955	ENSSFOG00015005436	smg6	100	51.535	Scleropages_formosus
ENSONIG00000005594	smg6	99	80.635	ENSSMAG00000019777	smg6	100	74.985	Scophthalmus_maximus
ENSONIG00000005594	smg6	100	83.488	ENSSDUG00000016412	smg6	100	80.645	Seriola_dumerili
ENSONIG00000005594	smg6	91	82.853	ENSSLDG00000020747	smg6	98	80.645	Seriola_lalandi_dorsalis
ENSONIG00000005594	smg6	99	50.764	ENSSPUG00000007152	SMG6	99	49.366	Sphenodon_punctatus
ENSONIG00000005594	smg6	100	83.191	ENSSPAG00000015633	smg6	100	80.921	Stegastes_partitus
ENSONIG00000005594	smg6	100	52.276	ENSSSCG00000017826	SMG6	100	51.369	Sus_scrofa
ENSONIG00000005594	smg6	100	51.041	ENSTGUG00000005836	SMG6	100	50.201	Taeniopygia_guttata
ENSONIG00000005594	smg6	100	67.153	ENSTRUG00000000358	smg6	98	69.241	Takifugu_rubripes
ENSONIG00000005594	smg6	100	70.992	ENSTNIG00000016164	smg6	98	78.324	Tetraodon_nigroviridis
ENSONIG00000005594	smg6	100	49.298	ENSTBEG00000011424	SMG6	100	48.625	Tupaia_belangeri
ENSONIG00000005594	smg6	91	57.389	ENSTTRG00000001175	SMG6	91	57.102	Tursiops_truncatus
ENSONIG00000005594	smg6	100	51.355	ENSUAMG00000025152	SMG6	100	50.594	Ursus_americanus
ENSONIG00000005594	smg6	97	51.882	ENSUMAG00000009306	SMG6	99	51.128	Ursus_maritimus
ENSONIG00000005594	smg6	84	85.185	ENSVPAG00000000225	SMG6	88	95.833	Vicugna_pacos
ENSONIG00000005594	smg6	100	52.101	ENSVVUG00000021727	SMG6	100	51.037	Vulpes_vulpes
ENSONIG00000005594	smg6	91	50.037	ENSXETG00000023799	SMG6	93	50.298	Xenopus_tropicalis
ENSONIG00000005594	smg6	98	74.005	ENSXCOG00000009867	smg6	99	68.463	Xiphophorus_couchianus
ENSONIG00000005594	smg6	100	75.542	ENSXMAG00000010321	smg6	100	69.659	Xiphophorus_maculatus