EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000006165 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-37o8.1
Alias: -
Full Name: elongation factor 1-alpha
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 5962 bases
Position: chrGL831138.1:3584101-3590062
Accession: 100690520
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000007766	GTP_EFTU	PF00009.27	1.3e-53	1	1
ENSONIP00000007767	GTP_EFTU	PF00009.27	1.4e-53	1	1
ENSONIP00000007766	MMR_HSR1	PF01926.23	1.4e-07	1	1
ENSONIP00000007767	MMR_HSR1	PF01926.23	1.4e-07	1	1
ENSONIP00000007766	GTP_EFTU_D2	PF03144.25	1.4e-11	1	1
ENSONIP00000007767	GTP_EFTU_D2	PF03144.25	1.4e-11	1	1
ENSONIP00000007766	GTP_EFTU_D3	PF03143.17	7.7e-40	1	1
ENSONIP00000007767	GTP_EFTU_D3	PF03143.17	8e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000007771	-	5413	-	ENSONIP00000007766	456 (aa)	XP_019218605	I3JFX5
ENSONIT00000007772	-	1395	-	ENSONIP00000007767	465 (aa)	-	I3JFX6

Gene Model

Click here to download ENSONIG00000006165's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000006165's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000006165	si:dkey-37o8.1	77	68.182	ENSONIG00000017760	-	99	68.272
ENSONIG00000006165	si:dkey-37o8.1	95	37.156	ENSONIG00000019754	-	73	36.961
ENSONIG00000006165	si:dkey-37o8.1	95	37.241	ENSONIG00000003456	gspt1l	74	37.162
ENSONIG00000006165	si:dkey-37o8.1	97	68.243	ENSONIG00000017758	-	96	68.243
ENSONIG00000006165	si:dkey-37o8.1	97	71.558	ENSONIG00000001187	-	96	71.558
ENSONIG00000006165	si:dkey-37o8.1	96	38.269	ENSONIG00000000460	hbs1l	61	38.182
ENSONIG00000006165	si:dkey-37o8.1	97	71.106	ENSONIG00000008977	eef1a1b	96	71.106
ENSONIG00000006165	si:dkey-37o8.1	96	30.649	ENSONIG00000019389	tufm	87	30.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000006165	si:dkey-37o8.1	100	91.886	ENSAPOG00000016459	si:dkey-37o8.1	100	91.886	Acanthochromis_polyacanthus
ENSONIG00000006165	si:dkey-37o8.1	97	91.892	ENSACIG00000020985	si:dkey-37o8.1	83	91.892	Amphilophus_citrinellus
ENSONIG00000006165	si:dkey-37o8.1	100	92.560	ENSAOCG00000002663	si:dkey-37o8.1	100	92.560	Amphiprion_ocellaris
ENSONIG00000006165	si:dkey-37o8.1	100	92.560	ENSAPEG00000012670	si:dkey-37o8.1	100	92.560	Amphiprion_percula
ENSONIG00000006165	si:dkey-37o8.1	93	92.891	ENSATEG00000002217	si:dkey-37o8.1	99	92.891	Anabas_testudineus
ENSONIG00000006165	si:dkey-37o8.1	100	98.904	ENSACLG00000003519	si:dkey-37o8.1	100	98.904	Astatotilapia_calliptera
ENSONIG00000006165	si:dkey-37o8.1	100	83.843	ENSAMXG00000002728	si:dkey-37o8.1	100	83.843	Astyanax_mexicanus
ENSONIG00000006165	si:dkey-37o8.1	96	75.171	ENSCPBG00000020570	-	87	75.171	Chrysemys_picta_bellii
ENSONIG00000006165	si:dkey-37o8.1	100	85.153	ENSCSEG00000019807	si:dkey-37o8.1	100	84.449	Cynoglossus_semilaevis
ENSONIG00000006165	si:dkey-37o8.1	99	88.546	ENSCVAG00000009828	si:dkey-37o8.1	99	88.546	Cyprinodon_variegatus
ENSONIG00000006165	si:dkey-37o8.1	97	82.167	ENSDARG00000071727	si:dkey-37o8.1	92	82.167	Danio_rerio
ENSONIG00000006165	si:dkey-37o8.1	100	83.406	ENSELUG00000007495	si:dkey-37o8.1	100	83.406	Esox_lucius
ENSONIG00000006165	si:dkey-37o8.1	98	89.509	ENSFHEG00000017452	si:dkey-37o8.1	98	89.509	Fundulus_heteroclitus
ENSONIG00000006165	si:dkey-37o8.1	97	79.684	ENSGMOG00000006122	si:dkey-37o8.1	98	79.684	Gadus_morhua
ENSONIG00000006165	si:dkey-37o8.1	98	82.366	ENSGAFG00000000367	si:dkey-37o8.1	99	82.366	Gambusia_affinis
ENSONIG00000006165	si:dkey-37o8.1	100	87.746	ENSGACG00000004505	si:dkey-37o8.1	100	87.746	Gasterosteus_aculeatus
ENSONIG00000006165	si:dkey-37o8.1	96	75.171	ENSGAGG00000007724	-	94	75.171	Gopherus_agassizii
ENSONIG00000006165	si:dkey-37o8.1	100	98.684	ENSHBUG00000015515	si:dkey-37o8.1	100	98.684	Haplochromis_burtoni
ENSONIG00000006165	si:dkey-37o8.1	97	80.587	ENSHCOG00000001215	si:dkey-37o8.1	98	80.587	Hippocampus_comes
ENSONIG00000006165	si:dkey-37o8.1	100	82.096	ENSIPUG00000004067	si:dkey-37o8.1	100	82.096	Ictalurus_punctatus
ENSONIG00000006165	si:dkey-37o8.1	100	88.621	ENSKMAG00000015910	si:dkey-37o8.1	100	88.621	Kryptolebias_marmoratus
ENSONIG00000006165	si:dkey-37o8.1	100	91.228	ENSLBEG00000021334	si:dkey-37o8.1	90	91.228	Labrus_bergylta
ENSONIG00000006165	si:dkey-37o8.1	97	76.749	ENSLACG00000003948	si:dkey-37o8.1	96	76.749	Latimeria_chalumnae
ENSONIG00000006165	si:dkey-37o8.1	99	80.353	ENSLOCG00000011245	si:dkey-37o8.1	99	80.353	Lepisosteus_oculatus
ENSONIG00000006165	si:dkey-37o8.1	98	75.000	ENSMAMG00000009907	si:dkey-37o8.1	94	75.000	Mastacembelus_armatus
ENSONIG00000006165	si:dkey-37o8.1	100	98.904	ENSMZEG00005018358	si:dkey-37o8.1	100	98.904	Maylandia_zebra
ENSONIG00000006165	si:dkey-37o8.1	98	89.732	ENSMMOG00000004111	si:dkey-37o8.1	98	89.732	Mola_mola
ENSONIG00000006165	si:dkey-37o8.1	96	81.735	ENSMALG00000017152	si:dkey-37o8.1	99	81.735	Monopterus_albus
ENSONIG00000006165	si:dkey-37o8.1	100	98.904	ENSNBRG00000013552	si:dkey-37o8.1	100	98.904	Neolamprologus_brichardi
ENSONIG00000006165	si:dkey-37o8.1	100	90.132	ENSORLG00000019066	si:dkey-37o8.1	100	90.132	Oryzias_latipes
ENSONIG00000006165	si:dkey-37o8.1	100	90.132	ENSORLG00020008094	si:dkey-37o8.1	100	90.132	Oryzias_latipes_hni
ENSONIG00000006165	si:dkey-37o8.1	100	89.912	ENSORLG00015008410	si:dkey-37o8.1	100	89.912	Oryzias_latipes_hsok
ENSONIG00000006165	si:dkey-37o8.1	100	89.474	ENSOMEG00000001868	si:dkey-37o8.1	100	89.474	Oryzias_melastigma
ENSONIG00000006165	si:dkey-37o8.1	97	83.521	ENSPKIG00000017246	si:dkey-37o8.1	97	83.521	Paramormyrops_kingsleyae
ENSONIG00000006165	si:dkey-37o8.1	57	69.030	ENSPSIG00000008080	-	94	69.030	Pelodiscus_sinensis
ENSONIG00000006165	si:dkey-37o8.1	98	89.509	ENSPFOG00000013173	si:dkey-37o8.1	98	89.509	Poecilia_formosa
ENSONIG00000006165	si:dkey-37o8.1	100	87.309	ENSPLAG00000010405	si:dkey-37o8.1	100	87.309	Poecilia_latipinna
ENSONIG00000006165	si:dkey-37o8.1	98	89.732	ENSPMEG00000015233	si:dkey-37o8.1	98	89.732	Poecilia_mexicana
ENSONIG00000006165	si:dkey-37o8.1	98	88.989	ENSPREG00000006280	si:dkey-37o8.1	98	88.989	Poecilia_reticulata
ENSONIG00000006165	si:dkey-37o8.1	100	98.246	ENSPNYG00000002059	si:dkey-37o8.1	100	98.246	Pundamilia_nyererei
ENSONIG00000006165	si:dkey-37o8.1	100	83.406	ENSPNAG00000009990	si:dkey-37o8.1	100	83.406	Pygocentrus_nattereri
ENSONIG00000006165	si:dkey-37o8.1	98	82.143	ENSSFOG00015019070	si:dkey-37o8.1	98	82.143	Scleropages_formosus
ENSONIG00000006165	si:dkey-37o8.1	100	92.544	ENSSMAG00000016143	si:dkey-37o8.1	100	92.544	Scophthalmus_maximus
ENSONIG00000006165	si:dkey-37o8.1	100	91.685	ENSSDUG00000009163	si:dkey-37o8.1	100	91.685	Seriola_dumerili
ENSONIG00000006165	si:dkey-37o8.1	100	91.466	ENSSLDG00000023761	si:dkey-37o8.1	100	91.466	Seriola_lalandi_dorsalis
ENSONIG00000006165	si:dkey-37o8.1	99	70.524	ENSSPUG00000007467	-	99	70.524	Sphenodon_punctatus
ENSONIG00000006165	si:dkey-37o8.1	100	91.685	ENSSPAG00000013856	si:dkey-37o8.1	100	91.685	Stegastes_partitus
ENSONIG00000006165	si:dkey-37o8.1	99	90.949	ENSTRUG00000009006	si:dkey-37o8.1	100	90.949	Takifugu_rubripes
ENSONIG00000006165	si:dkey-37o8.1	99	91.209	ENSTNIG00000017138	si:dkey-37o8.1	98	91.209	Tetraodon_nigroviridis
ENSONIG00000006165	si:dkey-37o8.1	96	75.399	ENSXETG00000017744	42Sp50	96	74.775	Xenopus_tropicalis
ENSONIG00000006165	si:dkey-37o8.1	98	89.663	ENSXCOG00000012296	si:dkey-37o8.1	98	89.663	Xiphophorus_couchianus
ENSONIG00000006165	si:dkey-37o8.1	98	89.955	ENSXMAG00000001998	si:dkey-37o8.1	98	89.955	Xiphophorus_maculatus