EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000006678 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 3308 bases
Position: chrGL831237.1:567651-570958
Accession: ZDB-GENE-041010-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000008436	CMS1	PF14617.6	3.3e-36	1	1
ENSONIP00000008436	DEAD	PF00270.29	6.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000008441	-	786	-	ENSONIP00000008436	261 (aa)	-	I3JHU2

Gene Model

Click here to download ENSONIG00000006678's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000006678's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000006678	cmss1	77	60.396	ENSG00000184220	CMSS1	98	58.750	Homo_sapiens
ENSONIG00000006678	cmss1	78	86.700	ENSAPOG00000010604	cmss1	96	73.946	Acanthochromis_polyacanthus
ENSONIG00000006678	cmss1	93	55.967	ENSAMEG00000004092	CMSS1	78	61.084	Ailuropoda_melanoleuca
ENSONIG00000006678	cmss1	99	84.615	ENSACIG00000021854	cmss1	98	84.615	Amphilophus_citrinellus
ENSONIG00000006678	cmss1	89	83.262	ENSAOCG00000013361	cmss1	90	80.843	Amphiprion_ocellaris
ENSONIG00000006678	cmss1	86	84.000	ENSAPEG00000005829	cmss1	90	81.226	Amphiprion_percula
ENSONIG00000006678	cmss1	98	80.469	ENSATEG00000008209	cmss1	91	79.468	Anabas_testudineus
ENSONIG00000006678	cmss1	77	62.376	ENSAPLG00000010542	CMSS1	88	62.376	Anas_platyrhynchos
ENSONIG00000006678	cmss1	94	58.130	ENSACAG00000011065	CMSS1	74	63.861	Anolis_carolinensis
ENSONIG00000006678	cmss1	93	53.719	ENSANAG00000023565	CMSS1	77	59.901	Aotus_nancymaae
ENSONIG00000006678	cmss1	100	98.084	ENSACLG00000027294	cmss1	90	98.084	Astatotilapia_calliptera
ENSONIG00000006678	cmss1	77	65.000	ENSAMXG00000002046	cmss1	69	65.517	Astyanax_mexicanus
ENSONIG00000006678	cmss1	77	60.396	ENSBTAG00000013663	CMSS1	73	60.396	Bos_taurus
ENSONIG00000006678	cmss1	93	54.959	ENSCJAG00000000610	CMSS1	84	57.466	Callithrix_jacchus
ENSONIG00000006678	cmss1	93	56.198	ENSCAFG00000009230	CMSS1	73	61.881	Canis_familiaris
ENSONIG00000006678	cmss1	93	56.198	ENSCAFG00020009464	-	74	61.881	Canis_lupus_dingo
ENSONIG00000006678	cmss1	72	62.963	ENSCAFG00020024156	-	59	62.963	Canis_lupus_dingo
ENSONIG00000006678	cmss1	77	60.396	ENSCHIG00000013003	CMSS1	73	60.396	Capra_hircus
ENSONIG00000006678	cmss1	77	60.891	ENSTSYG00000009266	CMSS1	78	60.891	Carlito_syrichta
ENSONIG00000006678	cmss1	71	54.255	ENSCAPG00000013584	CMSS1	87	54.255	Cavia_aperea
ENSONIG00000006678	cmss1	77	61.500	ENSCPOG00000014680	CMSS1	72	61.881	Cavia_porcellus
ENSONIG00000006678	cmss1	93	55.372	ENSCCAG00000034685	CMSS1	77	61.386	Cebus_capucinus
ENSONIG00000006678	cmss1	88	55.556	ENSCATG00000031980	CMSS1	77	61.386	Cercocebus_atys
ENSONIG00000006678	cmss1	77	60.500	ENSCLAG00000011241	CMSS1	87	60.891	Chinchilla_lanigera
ENSONIG00000006678	cmss1	88	55.556	ENSCSAG00000006024	CMSS1	82	61.386	Chlorocebus_sabaeus
ENSONIG00000006678	cmss1	77	44.000	ENSCHOG00000012098	CMSS1	73	44.554	Choloepus_hoffmanni
ENSONIG00000006678	cmss1	72	45.263	ENSCING00000014848	-	99	45.455	Ciona_intestinalis
ENSONIG00000006678	cmss1	77	61.386	ENSCANG00000031337	CMSS1	77	61.386	Colobus_angolensis_palliatus
ENSONIG00000006678	cmss1	77	58.911	ENSCGRG00001014305	Cmss1	73	58.911	Cricetulus_griseus_chok1gshd
ENSONIG00000006678	cmss1	77	58.911	ENSCGRG00000006722	Cmss1	79	58.911	Cricetulus_griseus_crigri
ENSONIG00000006678	cmss1	99	72.727	ENSCSEG00000004958	cmss1	90	71.970	Cynoglossus_semilaevis
ENSONIG00000006678	cmss1	98	78.599	ENSCVAG00000005039	cmss1	91	76.718	Cyprinodon_variegatus
ENSONIG00000006678	cmss1	98	60.853	ENSDARG00000112579	cmss1	76	66.968	Danio_rerio
ENSONIG00000006678	cmss1	77	61.386	ENSDNOG00000040418	CMSS1	73	61.386	Dasypus_novemcinctus
ENSONIG00000006678	cmss1	93	55.372	ENSDORG00000010461	Cmss1	72	61.386	Dipodomys_ordii
ENSONIG00000006678	cmss1	51	52.273	ENSEBUG00000002156	-	96	52.273	Eptatretus_burgeri
ENSONIG00000006678	cmss1	77	60.000	ENSEASG00005010966	CMSS1	92	60.396	Equus_asinus_asinus
ENSONIG00000006678	cmss1	77	59.500	ENSECAG00000015662	CMSS1	89	59.901	Equus_caballus
ENSONIG00000006678	cmss1	77	43.000	ENSEEUG00000007624	-	73	43.564	Erinaceus_europaeus
ENSONIG00000006678	cmss1	100	64.751	ENSELUG00000019459	cmss1	68	73.892	Esox_lucius
ENSONIG00000006678	cmss1	93	56.198	ENSFCAG00000044577	CMSS1	72	62.376	Felis_catus
ENSONIG00000006678	cmss1	77	61.386	ENSFALG00000005816	CMSS1	85	61.386	Ficedula_albicollis
ENSONIG00000006678	cmss1	77	61.881	ENSFDAG00000012577	CMSS1	89	61.881	Fukomys_damarensis
ENSONIG00000006678	cmss1	89	78.879	ENSFHEG00000012008	cmss1	94	78.947	Fundulus_heteroclitus
ENSONIG00000006678	cmss1	99	69.498	ENSGMOG00000016729	cmss1	90	69.112	Gadus_morhua
ENSONIG00000006678	cmss1	77	63.366	ENSGALG00000015267	CMSS1	77	63.366	Gallus_gallus
ENSONIG00000006678	cmss1	100	77.186	ENSGAFG00000021217	cmss1	97	75.093	Gambusia_affinis
ENSONIG00000006678	cmss1	99	75.194	ENSGACG00000002798	cmss1	90	74.419	Gasterosteus_aculeatus
ENSONIG00000006678	cmss1	93	58.848	ENSGAGG00000019861	CMSS1	79	62.871	Gopherus_agassizii
ENSONIG00000006678	cmss1	77	60.891	ENSGGOG00000014125	CMSS1	77	60.891	Gorilla_gorilla
ENSONIG00000006678	cmss1	100	96.935	ENSHBUG00000008431	cmss1	92	96.935	Haplochromis_burtoni
ENSONIG00000006678	cmss1	77	60.500	ENSHGLG00000019481	CMSS1	82	60.891	Heterocephalus_glaber_female
ENSONIG00000006678	cmss1	77	60.500	ENSHGLG00100010314	CMSS1	81	60.891	Heterocephalus_glaber_male
ENSONIG00000006678	cmss1	97	73.913	ENSHCOG00000003222	cmss1	77	77.434	Hippocampus_comes
ENSONIG00000006678	cmss1	95	66.000	ENSIPUG00000011591	cmss1	70	70.936	Ictalurus_punctatus
ENSONIG00000006678	cmss1	77	60.396	ENSSTOG00000019366	CMSS1	73	60.396	Ictidomys_tridecemlineatus
ENSONIG00000006678	cmss1	78	62.255	ENSJJAG00000014894	Cmss1	90	62.376	Jaculus_jaculus
ENSONIG00000006678	cmss1	99	68.462	ENSKMAG00000002390	cmss1	82	76.355	Kryptolebias_marmoratus
ENSONIG00000006678	cmss1	78	77.451	ENSLBEG00000006298	cmss1	98	65.909	Labrus_bergylta
ENSONIG00000006678	cmss1	77	64.356	ENSLACG00000009293	CMSS1	88	64.356	Latimeria_chalumnae
ENSONIG00000006678	cmss1	77	60.891	ENSLOCG00000009391	cmss1	71	60.891	Lepisosteus_oculatus
ENSONIG00000006678	cmss1	77	62.000	ENSLAFG00000017509	CMSS1	89	62.376	Loxodonta_africana
ENSONIG00000006678	cmss1	88	55.144	ENSMFAG00000045006	CMSS1	77	60.891	Macaca_fascicularis
ENSONIG00000006678	cmss1	88	54.733	ENSMMUG00000002939	CMSS1	85	60.938	Macaca_mulatta
ENSONIG00000006678	cmss1	88	55.144	ENSMNEG00000031315	CMSS1	77	60.891	Macaca_nemestrina
ENSONIG00000006678	cmss1	88	55.144	ENSMLEG00000033660	CMSS1	77	60.891	Mandrillus_leucophaeus
ENSONIG00000006678	cmss1	100	80.843	ENSMAMG00000017176	cmss1	89	81.467	Mastacembelus_armatus
ENSONIG00000006678	cmss1	100	98.084	ENSMZEG00005021886	cmss1	90	98.084	Maylandia_zebra
ENSONIG00000006678	cmss1	77	63.366	ENSMGAG00000014360	CMSS1	89	63.366	Meleagris_gallopavo
ENSONIG00000006678	cmss1	77	40.099	ENSMAUG00000020609	Cmss1	66	40.099	Mesocricetus_auratus
ENSONIG00000006678	cmss1	77	62.000	ENSMICG00000048977	CMSS1	78	62.376	Microcebus_murinus
ENSONIG00000006678	cmss1	89	53.112	ENSMOCG00000021937	Cmss1	73	60.396	Microtus_ochrogaster
ENSONIG00000006678	cmss1	88	74.359	ENSMMOG00000019794	cmss1	84	79.803	Mola_mola
ENSONIG00000006678	cmss1	92	53.968	ENSMODG00000002275	CMSS1	83	60.000	Monodelphis_domestica
ENSONIG00000006678	cmss1	98	79.377	ENSMALG00000004250	cmss1	88	78.125	Monopterus_albus
ENSONIG00000006678	cmss1	77	61.881	MGP_CAROLIEiJ_G0020824	Cmss1	73	61.881	Mus_caroli
ENSONIG00000006678	cmss1	77	60.891	ENSMUSG00000022748	Cmss1	73	60.891	Mus_musculus
ENSONIG00000006678	cmss1	77	60.891	MGP_PahariEiJ_G0016524	Cmss1	73	60.891	Mus_pahari
ENSONIG00000006678	cmss1	77	60.891	MGP_SPRETEiJ_G0021724	Cmss1	73	60.891	Mus_spretus
ENSONIG00000006678	cmss1	76	60.804	ENSMPUG00000011324	CMSS1	78	61.194	Mustela_putorius_furo
ENSONIG00000006678	cmss1	77	61.881	ENSMLUG00000001131	CMSS1	78	62.255	Myotis_lucifugus
ENSONIG00000006678	cmss1	77	59.406	ENSNGAG00000020316	Cmss1	72	59.406	Nannospalax_galili
ENSONIG00000006678	cmss1	100	97.318	ENSNBRG00000003095	cmss1	90	97.318	Neolamprologus_brichardi
ENSONIG00000006678	cmss1	77	61.000	ENSNLEG00000034172	CMSS1	77	61.386	Nomascus_leucogenys
ENSONIG00000006678	cmss1	88	51.092	ENSMEUG00000014505	CMSS1	89	52.970	Notamacropus_eugenii
ENSONIG00000006678	cmss1	77	61.386	ENSOPRG00000002986	CMSS1	73	61.386	Ochotona_princeps
ENSONIG00000006678	cmss1	77	58.911	ENSODEG00000003558	-	75	58.911	Octodon_degus
ENSONIG00000006678	cmss1	77	51.980	ENSODEG00000001853	-	71	51.980	Octodon_degus
ENSONIG00000006678	cmss1	77	61.000	ENSODEG00000005226	-	72	61.386	Octodon_degus
ENSONIG00000006678	cmss1	93	46.914	ENSODEG00000009446	-	78	51.980	Octodon_degus
ENSONIG00000006678	cmss1	84	59.817	ENSOANG00000007529	CMSS1	87	61.386	Ornithorhynchus_anatinus
ENSONIG00000006678	cmss1	93	54.959	ENSOCUG00000025366	CMSS1	73	60.396	Oryctolagus_cuniculus
ENSONIG00000006678	cmss1	100	74.330	ENSORLG00000020340	cmss1	91	73.180	Oryzias_latipes
ENSONIG00000006678	cmss1	100	63.602	ENSORLG00020012235	cmss1	97	62.069	Oryzias_latipes_hni
ENSONIG00000006678	cmss1	100	64.015	ENSORLG00015015551	cmss1	76	72.906	Oryzias_latipes_hsok
ENSONIG00000006678	cmss1	100	74.713	ENSOMEG00000012555	cmss1	90	74.330	Oryzias_melastigma
ENSONIG00000006678	cmss1	85	58.371	ENSOGAG00000002045	CMSS1	97	58.371	Otolemur_garnettii
ENSONIG00000006678	cmss1	77	60.099	ENSOARG00000017899	CMSS1	70	60.099	Ovis_aries
ENSONIG00000006678	cmss1	77	60.891	ENSPPAG00000038515	CMSS1	74	60.891	Pan_paniscus
ENSONIG00000006678	cmss1	77	62.000	ENSPPRG00000016767	CMSS1	72	62.376	Panthera_pardus
ENSONIG00000006678	cmss1	77	61.500	ENSPTIG00000018274	CMSS1	72	61.881	Panthera_tigris_altaica
ENSONIG00000006678	cmss1	77	60.891	ENSPTRG00000015157	CMSS1	82	60.891	Pan_troglodytes
ENSONIG00000006678	cmss1	77	61.386	ENSPANG00000019980	CMSS1	80	61.386	Papio_anubis
ENSONIG00000006678	cmss1	85	66.368	ENSPKIG00000012609	cmss1	82	66.368	Paramormyrops_kingsleyae
ENSONIG00000006678	cmss1	89	60.606	ENSPSIG00000003849	CMSS1	88	64.356	Pelodiscus_sinensis
ENSONIG00000006678	cmss1	88	73.160	ENSPMGG00000010286	cmss1	88	78.431	Periophthalmus_magnuspinnatus
ENSONIG00000006678	cmss1	100	49.819	ENSPEMG00000016384	Cmss1	72	60.396	Peromyscus_maniculatus_bairdii
ENSONIG00000006678	cmss1	78	50.000	ENSPMAG00000001146	cmss1	99	50.246	Petromyzon_marinus
ENSONIG00000006678	cmss1	93	56.612	ENSPCIG00000015656	CMSS1	77	61.881	Phascolarctos_cinereus
ENSONIG00000006678	cmss1	99	81.226	ENSPFOG00000016849	cmss1	91	80.843	Poecilia_formosa
ENSONIG00000006678	cmss1	99	80.843	ENSPLAG00000008323	cmss1	91	80.460	Poecilia_latipinna
ENSONIG00000006678	cmss1	99	80.843	ENSPMEG00000021020	cmss1	91	80.460	Poecilia_mexicana
ENSONIG00000006678	cmss1	99	80.077	ENSPREG00000007618	cmss1	89	79.693	Poecilia_reticulata
ENSONIG00000006678	cmss1	88	55.144	ENSPPYG00000013606	CMSS1	74	60.891	Pongo_abelii
ENSONIG00000006678	cmss1	93	56.612	ENSPCOG00000020035	CMSS1	78	62.871	Propithecus_coquereli
ENSONIG00000006678	cmss1	93	47.107	ENSPVAG00000017031	CMSS1	72	51.485	Pteropus_vampyrus
ENSONIG00000006678	cmss1	90	97.447	ENSPNYG00000013428	cmss1	86	97.447	Pundamilia_nyererei
ENSONIG00000006678	cmss1	99	62.791	ENSPNAG00000007912	cmss1	69	68.473	Pygocentrus_nattereri
ENSONIG00000006678	cmss1	77	60.891	ENSRNOG00000027888	Cmss1	79	60.891	Rattus_norvegicus
ENSONIG00000006678	cmss1	88	55.556	ENSRBIG00000037931	CMSS1	77	60.891	Rhinopithecus_bieti
ENSONIG00000006678	cmss1	88	55.556	ENSRROG00000042910	CMSS1	77	60.891	Rhinopithecus_roxellana
ENSONIG00000006678	cmss1	88	54.733	ENSSBOG00000030980	CMSS1	77	60.396	Saimiri_boliviensis_boliviensis
ENSONIG00000006678	cmss1	77	62.376	ENSSHAG00000009321	CMSS1	80	62.376	Sarcophilus_harrisii
ENSONIG00000006678	cmss1	78	73.399	ENSSFOG00015001509	cmss1	70	73.399	Scleropages_formosus
ENSONIG00000006678	cmss1	98	78.210	ENSSMAG00000001653	cmss1	90	76.136	Scophthalmus_maximus
ENSONIG00000006678	cmss1	100	81.369	ENSSDUG00000007719	cmss1	91	81.749	Seriola_dumerili
ENSONIG00000006678	cmss1	100	74.908	ENSSLDG00000012300	cmss1	85	82.039	Seriola_lalandi_dorsalis
ENSONIG00000006678	cmss1	93	47.521	ENSSARG00000003584	CMSS1	79	49.115	Sorex_araneus
ENSONIG00000006678	cmss1	77	61.386	ENSSPUG00000003865	CMSS1	89	61.386	Sphenodon_punctatus
ENSONIG00000006678	cmss1	100	78.161	ENSSPAG00000019182	cmss1	78	74.340	Stegastes_partitus
ENSONIG00000006678	cmss1	77	60.500	ENSSSCG00000011970	CMSS1	72	60.891	Sus_scrofa
ENSONIG00000006678	cmss1	77	61.881	ENSTGUG00000013635	CMSS1	88	61.881	Taeniopygia_guttata
ENSONIG00000006678	cmss1	97	73.622	ENSTRUG00000015265	cmss1	80	77.434	Takifugu_rubripes
ENSONIG00000006678	cmss1	78	71.921	ENSTNIG00000002880	cmss1	74	71.921	Tetraodon_nigroviridis
ENSONIG00000006678	cmss1	77	43.069	ENSTBEG00000016722	CMSS1	72	43.069	Tupaia_belangeri
ENSONIG00000006678	cmss1	93	54.545	ENSTTRG00000001562	CMSS1	72	59.901	Tursiops_truncatus
ENSONIG00000006678	cmss1	77	61.881	ENSUAMG00000024209	CMSS1	91	61.881	Ursus_americanus
ENSONIG00000006678	cmss1	77	61.386	ENSUMAG00000001983	CMSS1	78	61.386	Ursus_maritimus
ENSONIG00000006678	cmss1	61	60.000	ENSVPAG00000000263	CMSS1	57	60.000	Vicugna_pacos
ENSONIG00000006678	cmss1	77	61.386	ENSVVUG00000007776	-	80	61.386	Vulpes_vulpes
ENSONIG00000006678	cmss1	93	56.612	ENSVVUG00000021647	-	82	61.881	Vulpes_vulpes
ENSONIG00000006678	cmss1	100	55.094	ENSXETG00000011858	cmss1	73	61.084	Xenopus_tropicalis
ENSONIG00000006678	cmss1	100	76.604	ENSXCOG00000018724	cmss1	89	70.397	Xiphophorus_couchianus
ENSONIG00000006678	cmss1	100	76.604	ENSXMAG00000011243	cmss1	98	70.397	Xiphophorus_maculatus