EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000006803 (Gene tree)
Gene ID: 100709282
Gene Symbol: rbck1
Alias: -
Full Name: RanBP-type and C3HC4-type zinc finger containing 1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 8060 bases
Position: chrGL831330.1:161869-169928
Accession: ZDB-GENE-040704-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000008585	zf-RanBP	PF00641.18	2.1e-06	1	1
ENSONIP00000008586	zf-RanBP	PF00641.18	2.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000008590	-	1256	-	ENSONIP00000008585	417 (aa)	-	I3JI91
ENSONIT00000008591	-	1542	-	ENSONIP00000008586	513 (aa)	-	I3JI92

Gene Model

Click here to download ENSONIG00000006803's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000006803's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000006803	rbck1	53	33.937	ENSONIG00000009626	-	97	34.667
ENSONIG00000006803	rbck1	100	45.102	ENSONIG00000014401	shrprbck1r	76	45.120

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000006803	rbck1	99	96.450	ENSACLG00000020380	rbck1	98	96.450	Astatotilapia_calliptera
ENSONIG00000006803	rbck1	99	58.984	ENSAMXG00000004941	rbck1	98	58.835	Astyanax_mexicanus
ENSONIG00000006803	rbck1	99	76.378	ENSCVAG00000002649	rbck1	98	76.969	Cyprinodon_variegatus
ENSONIG00000006803	rbck1	99	64.062	ENSELUG00000022786	rbck1	96	63.867	Esox_lucius
ENSONIG00000006803	rbck1	99	78.150	ENSFHEG00000016918	rbck1	98	77.756	Fundulus_heteroclitus
ENSONIG00000006803	rbck1	99	96.252	ENSHBUG00000008208	rbck1	98	96.252	Haplochromis_burtoni
ENSONIG00000006803	rbck1	99	96.647	ENSMZEG00005005317	rbck1	98	96.647	Maylandia_zebra
ENSONIG00000006803	rbck1	96	95.522	ENSNBRG00000006179	rbck1	90	96.536	Neolamprologus_brichardi
ENSONIG00000006803	rbck1	98	96.238	ENSPNYG00000012666	rbck1	98	96.238	Pundamilia_nyererei
ENSONIG00000006803	rbck1	99	81.871	ENSSDUG00000023631	rbck1	98	82.101	Seriola_dumerili
ENSONIG00000006803	rbck1	99	81.836	ENSSLDG00000008305	rbck1	98	81.323	Seriola_lalandi_dorsalis
ENSONIG00000006803	rbck1	99	82.261	ENSSPAG00000009432	rbck1	98	81.942	Stegastes_partitus