EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000006817 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 5921 bases
Position: chrGL831237.1:1926829-1932749
Accession: 100705169
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000008603	Smg4_UPF3	PF03467.15	1.8e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000008608	-	2746	XM_005475435	ENSONIP00000008603	466 (aa)	XP_005475492	I3JIA9

Gene Model

Click here to download ENSONIG00000006817's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000006817's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000006817	upf3a	88	56.322	ENSG00000169062	UPF3A	91	56.322	Homo_sapiens
ENSONIG00000006817	upf3a	100	95.708	ENSAPOG00000013484	upf3a	100	95.708	Acanthochromis_polyacanthus
ENSONIG00000006817	upf3a	85	57.869	ENSAMEG00000004259	UPF3A	90	57.314	Ailuropoda_melanoleuca
ENSONIG00000006817	upf3a	98	92.902	ENSACIG00000020468	upf3a	99	92.902	Amphilophus_citrinellus
ENSONIG00000006817	upf3a	65	60.127	ENSAOCG00000000706	upf3b	93	50.572	Amphiprion_ocellaris
ENSONIG00000006817	upf3a	100	96.352	ENSAOCG00000020784	upf3a	100	96.352	Amphiprion_ocellaris
ENSONIG00000006817	upf3a	100	96.352	ENSAPEG00000003519	upf3a	100	96.352	Amphiprion_percula
ENSONIG00000006817	upf3a	100	93.562	ENSATEG00000005843	upf3a	100	93.562	Anabas_testudineus
ENSONIG00000006817	upf3a	82	65.743	ENSACAG00000001540	UPF3A	94	65.743	Anolis_carolinensis
ENSONIG00000006817	upf3a	82	52.427	ENSANAG00000021894	-	77	69.461	Aotus_nancymaae
ENSONIG00000006817	upf3a	83	45.913	ENSANAG00000025598	-	70	68.116	Aotus_nancymaae
ENSONIG00000006817	upf3a	94	51.875	ENSANAG00000021713	UPF3A	99	52.083	Aotus_nancymaae
ENSONIG00000006817	upf3a	100	94.628	ENSACLG00000026274	upf3a	100	94.628	Astatotilapia_calliptera
ENSONIG00000006817	upf3a	98	82.495	ENSAMXG00000002608	upf3a	99	82.314	Astyanax_mexicanus
ENSONIG00000006817	upf3a	91	54.933	ENSCJAG00000019102	UPF3A	95	54.565	Callithrix_jacchus
ENSONIG00000006817	upf3a	82	52.184	ENSCJAG00000004975	UPF3B	77	68.862	Callithrix_jacchus
ENSONIG00000006817	upf3a	85	45.933	ENSCAFG00020004074	UPF3B	69	67.442	Canis_lupus_dingo
ENSONIG00000006817	upf3a	83	56.784	ENSCHIG00000008682	UPF3A	85	54.713	Capra_hircus
ENSONIG00000006817	upf3a	82	51.325	ENSTSYG00000014690	UPF3B	76	64.535	Carlito_syrichta
ENSONIG00000006817	upf3a	76	55.080	ENSCPOG00000006824	UPF3A	76	59.821	Cavia_porcellus
ENSONIG00000006817	upf3a	92	54.292	ENSCCAG00000018406	UPF3A	99	53.958	Cebus_capucinus
ENSONIG00000006817	upf3a	81	39.130	ENSCCAG00000029813	-	52	58.750	Cebus_capucinus
ENSONIG00000006817	upf3a	92	56.278	ENSCATG00000029733	UPF3A	95	56.541	Cercocebus_atys
ENSONIG00000006817	upf3a	92	56.140	ENSCSAG00000017388	UPF3A	95	56.182	Chlorocebus_sabaeus
ENSONIG00000006817	upf3a	82	58.486	ENSCGRG00001017387	Upf3a	89	56.818	Cricetulus_griseus_chok1gshd
ENSONIG00000006817	upf3a	82	58.486	ENSCGRG00000001468	Upf3a	89	56.818	Cricetulus_griseus_crigri
ENSONIG00000006817	upf3a	99	89.462	ENSCSEG00000005106	upf3a	99	89.462	Cynoglossus_semilaevis
ENSONIG00000006817	upf3a	100	88.412	ENSCVAG00000022333	upf3a	100	88.412	Cyprinodon_variegatus
ENSONIG00000006817	upf3a	99	80.645	ENSDARG00000069297	upf3a	99	81.223	Danio_rerio
ENSONIG00000006817	upf3a	84	59.322	ENSDNOG00000034391	UPF3A	90	60.349	Dasypus_novemcinctus
ENSONIG00000006817	upf3a	92	51.717	ENSETEG00000010110	UPF3A	96	51.717	Echinops_telfairi
ENSONIG00000006817	upf3a	82	48.030	ENSEASG00005012919	UPF3B	62	71.014	Equus_asinus_asinus
ENSONIG00000006817	upf3a	82	48.030	ENSECAG00000016947	UPF3B	62	64.286	Equus_caballus
ENSONIG00000006817	upf3a	98	82.974	ENSELUG00000011050	upf3a	99	82.796	Esox_lucius
ENSONIG00000006817	upf3a	90	56.951	ENSFCAG00000014602	UPF3A	92	56.951	Felis_catus
ENSONIG00000006817	upf3a	100	89.700	ENSGAFG00000021170	upf3a	100	89.700	Gambusia_affinis
ENSONIG00000006817	upf3a	80	52.239	ENSGACG00000017435	upf3b	60	71.687	Gasterosteus_aculeatus
ENSONIG00000006817	upf3a	69	83.282	ENSGACG00000001972	upf3a	100	83.282	Gasterosteus_aculeatus
ENSONIG00000006817	upf3a	88	56.909	ENSGGOG00000015428	UPF3A	91	56.552	Gorilla_gorilla
ENSONIG00000006817	upf3a	81	47.815	ENSGGOG00000043074	-	80	46.272	Gorilla_gorilla
ENSONIG00000006817	upf3a	80	48.285	ENSGGOG00000041219	-	85	46.512	Gorilla_gorilla
ENSONIG00000006817	upf3a	100	98.069	ENSHBUG00000011325	upf3a	100	98.069	Haplochromis_burtoni
ENSONIG00000006817	upf3a	76	56.250	ENSHGLG00000001544	UPF3A	92	54.569	Heterocephalus_glaber_female
ENSONIG00000006817	upf3a	76	56.250	ENSHGLG00100013244	UPF3A	92	54.569	Heterocephalus_glaber_male
ENSONIG00000006817	upf3a	94	81.674	ENSHCOG00000013985	upf3a	94	76.244	Hippocampus_comes
ENSONIG00000006817	upf3a	98	80.963	ENSIPUG00000023450	upf3a	99	80.786	Ictalurus_punctatus
ENSONIG00000006817	upf3a	100	92.719	ENSKMAG00000004381	upf3a	100	92.719	Kryptolebias_marmoratus
ENSONIG00000006817	upf3a	98	87.555	ENSLBEG00000021570	upf3a	100	87.609	Labrus_bergylta
ENSONIG00000006817	upf3a	60	42.815	ENSLACG00000006645	UPF3A	66	89.286	Latimeria_chalumnae
ENSONIG00000006817	upf3a	97	75.163	ENSLOCG00000002665	upf3a	98	75.163	Lepisosteus_oculatus
ENSONIG00000006817	upf3a	92	55.405	ENSMFAG00000045016	UPF3A	95	55.234	Macaca_fascicularis
ENSONIG00000006817	upf3a	87	58.111	ENSMMUG00000007449	UPF3A	95	56.787	Macaca_mulatta
ENSONIG00000006817	upf3a	85	59.296	ENSMNEG00000036402	UPF3A	83	59.305	Macaca_nemestrina
ENSONIG00000006817	upf3a	85	58.794	ENSMLEG00000014726	UPF3A	94	58.809	Mandrillus_leucophaeus
ENSONIG00000006817	upf3a	100	91.286	ENSMAMG00000018364	upf3a	100	91.286	Mastacembelus_armatus
ENSONIG00000006817	upf3a	100	94.628	ENSMZEG00005021571	upf3a	100	94.628	Maylandia_zebra
ENSONIG00000006817	upf3a	85	62.774	ENSMGAG00000014837	UPF3A	99	62.774	Meleagris_gallopavo
ENSONIG00000006817	upf3a	58	67.025	ENSMOCG00000000550	Upf3a	57	68.627	Microtus_ochrogaster
ENSONIG00000006817	upf3a	100	87.992	ENSMMOG00000019751	upf3a	100	87.992	Mola_mola
ENSONIG00000006817	upf3a	83	65.250	ENSMODG00000003159	UPF3A	93	66.667	Monodelphis_domestica
ENSONIG00000006817	upf3a	91	55.098	ENSMPUG00000009139	UPF3A	94	55.098	Mustela_putorius_furo
ENSONIG00000006817	upf3a	80	59.796	ENSMLUG00000015905	UPF3A	92	59.796	Myotis_lucifugus
ENSONIG00000006817	upf3a	100	98.283	ENSNBRG00000000828	upf3a	100	98.283	Neolamprologus_brichardi
ENSONIG00000006817	upf3a	88	56.542	ENSNLEG00000007563	UPF3A	91	56.881	Nomascus_leucogenys
ENSONIG00000006817	upf3a	83	51.332	ENSODEG00000002186	-	50	54.673	Octodon_degus
ENSONIG00000006817	upf3a	77	55.676	ENSOANG00000006985	-	95	55.080	Ornithorhynchus_anatinus
ENSONIG00000006817	upf3a	100	86.383	ENSORLG00000010911	upf3a	100	86.383	Oryzias_latipes
ENSONIG00000006817	upf3a	100	85.837	ENSORLG00020014317	upf3a	100	85.837	Oryzias_latipes_hni
ENSONIG00000006817	upf3a	82	43.632	ENSORLG00020003758	upf3b	51	70.000	Oryzias_latipes_hni
ENSONIG00000006817	upf3a	100	86.481	ENSORLG00015017339	upf3a	58	86.481	Oryzias_latipes_hsok
ENSONIG00000006817	upf3a	100	88.627	ENSOMEG00000014425	upf3a	100	88.627	Oryzias_melastigma
ENSONIG00000006817	upf3a	84	58.025	ENSOARG00000009004	UPF3A	84	58.025	Ovis_aries
ENSONIG00000006817	upf3a	88	55.632	ENSPPAG00000042267	UPF3A	91	56.092	Pan_paniscus
ENSONIG00000006817	upf3a	90	56.600	ENSPPRG00000025062	UPF3A	92	56.600	Panthera_pardus
ENSONIG00000006817	upf3a	88	55.632	ENSPTRG00000006073	UPF3A	91	56.092	Pan_troglodytes
ENSONIG00000006817	upf3a	80	44.186	ENSPTRG00000051640	-	85	42.377	Pan_troglodytes
ENSONIG00000006817	upf3a	80	47.804	ENSPTRG00000041187	-	85	44.444	Pan_troglodytes
ENSONIG00000006817	upf3a	93	56.889	ENSPANG00000004346	UPF3A	95	56.889	Papio_anubis
ENSONIG00000006817	upf3a	89	50.110	ENSPKIG00000019226	upf3b	92	67.114	Paramormyrops_kingsleyae
ENSONIG00000006817	upf3a	97	71.546	ENSPKIG00000004422	upf3a	100	70.791	Paramormyrops_kingsleyae
ENSONIG00000006817	upf3a	83	66.080	ENSPSIG00000007468	UPF3A	96	66.080	Pelodiscus_sinensis
ENSONIG00000006817	upf3a	100	83.573	ENSPMGG00000012696	upf3a	100	83.573	Periophthalmus_magnuspinnatus
ENSONIG00000006817	upf3a	74	69.432	ENSPCIG00000019590	-	90	68.421	Phascolarctos_cinereus
ENSONIG00000006817	upf3a	100	89.485	ENSPFOG00000013222	upf3a	100	89.485	Poecilia_formosa
ENSONIG00000006817	upf3a	98	88.889	ENSPLAG00000011960	upf3a	100	88.889	Poecilia_latipinna
ENSONIG00000006817	upf3a	100	86.186	ENSPMEG00000000836	upf3a	100	86.186	Poecilia_mexicana
ENSONIG00000006817	upf3a	88	56.322	ENSPPYG00000005536	UPF3A	91	56.552	Pongo_abelii
ENSONIG00000006817	upf3a	85	44.965	ENSPCOG00000021960	UPF3B	51	69.880	Propithecus_coquereli
ENSONIG00000006817	upf3a	82	57.750	ENSPVAG00000005656	UPF3A	82	57.000	Pteropus_vampyrus
ENSONIG00000006817	upf3a	100	94.628	ENSPNYG00000011289	upf3a	100	94.628	Pundamilia_nyererei
ENSONIG00000006817	upf3a	83	52.594	ENSPNAG00000021528	upf3b	58	70.455	Pygocentrus_nattereri
ENSONIG00000006817	upf3a	99	80.860	ENSPNAG00000019532	upf3a	100	80.860	Pygocentrus_nattereri
ENSONIG00000006817	upf3a	87	57.702	ENSRBIG00000034007	UPF3A	93	57.554	Rhinopithecus_bieti
ENSONIG00000006817	upf3a	84	58.690	ENSRROG00000012212	UPF3A	85	58.706	Rhinopithecus_roxellana
ENSONIG00000006817	upf3a	82	52.184	ENSSBOG00000019740	UPF3B	78	70.303	Saimiri_boliviensis_boliviensis
ENSONIG00000006817	upf3a	75	55.285	ENSSBOG00000029989	UPF3A	95	48.608	Saimiri_boliviensis_boliviensis
ENSONIG00000006817	upf3a	83	65.829	ENSSHAG00000009895	UPF3A	94	66.917	Sarcophilus_harrisii
ENSONIG00000006817	upf3a	98	72.707	ENSSFOG00015021851	upf3a	99	71.212	Scleropages_formosus
ENSONIG00000006817	upf3a	52	68.379	ENSSMAG00000012913	upf3b	53	73.939	Scophthalmus_maximus
ENSONIG00000006817	upf3a	100	84.211	ENSSMAG00000003858	upf3a	100	85.425	Scophthalmus_maximus
ENSONIG00000006817	upf3a	100	92.531	ENSSDUG00000009680	upf3a	100	92.531	Seriola_dumerili
ENSONIG00000006817	upf3a	100	95.708	ENSSLDG00000009700	upf3a	100	95.708	Seriola_lalandi_dorsalis
ENSONIG00000006817	upf3a	79	49.347	ENSSARG00000007262	UPF3A	92	48.042	Sorex_araneus
ENSONIG00000006817	upf3a	100	95.279	ENSSPAG00000007938	upf3a	100	95.279	Stegastes_partitus
ENSONIG00000006817	upf3a	81	58.163	ENSSSCG00000024679	UPF3A	51	68.720	Sus_scrofa
ENSONIG00000006817	upf3a	82	67.254	ENSTGUG00000009493	UPF3A	99	67.254	Taeniopygia_guttata
ENSONIG00000006817	upf3a	98	86.433	ENSTRUG00000012730	upf3a	99	86.245	Takifugu_rubripes
ENSONIG00000006817	upf3a	83	77.020	ENSTNIG00000014973	upf3a	100	76.515	Tetraodon_nigroviridis
ENSONIG00000006817	upf3a	72	54.701	ENSTTRG00000015414	UPF3A	73	54.545	Tursiops_truncatus
ENSONIG00000006817	upf3a	85	45.714	ENSUAMG00000024565	UPF3B	66	65.000	Ursus_americanus
ENSONIG00000006817	upf3a	82	46.420	ENSVVUG00000011594	UPF3B	83	66.111	Vulpes_vulpes
ENSONIG00000006817	upf3a	90	56.075	ENSXETG00000002572	upf3a	100	56.075	Xenopus_tropicalis
ENSONIG00000006817	upf3a	83	46.305	ENSXETG00000007440	upf3b	71	72.121	Xenopus_tropicalis
ENSONIG00000006817	upf3a	100	90.343	ENSXMAG00000013452	upf3a	100	90.343	Xiphophorus_maculatus