EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000006871 (Gene tree)
Gene ID: 100691393
Gene Symbol: -
Alias: -
Full Name: polyadenylate-binding protein 1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 4362 bases
Position: chrGL831244.1:1734662-1739023
Accession: 100691393
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000008669	PABP	PF00658.18	5.4e-32	1	1
ENSONIP00000008669	RRM_5	PF13893.6	2.8e-08	1	2
ENSONIP00000008669	RRM_5	PF13893.6	2.8e-08	2	2
ENSONIP00000008669	RRM_1	PF00076.22	1.6e-93	1	4
ENSONIP00000008669	RRM_1	PF00076.22	1.6e-93	2	4
ENSONIP00000008669	RRM_1	PF00076.22	1.6e-93	3	4
ENSONIP00000008669	RRM_1	PF00076.22	1.6e-93	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000008674	-	2064	-	ENSONIP00000008669	635 (aa)	XP_003452137	I3JIH5

Gene Model

Click here to download ENSONIG00000006871's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000006871's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000006871	-	60	37.333	ENSONIG00000013576	rbm19	76	37.333
ENSONIG00000006871	-	56	30.220	ENSONIG00000014924	rbm28	58	30.055
ENSONIG00000006871	-	50	34.884	ENSONIG00000008300	celf1	64	34.884
ENSONIG00000006871	-	100	89.342	ENSONIG00000002717	pabpc1b	100	89.342
ENSONIG00000006871	-	57	34.884	ENSONIG00000017931	-	52	34.884
ENSONIG00000006871	-	59	36.145	ENSONIG00000002360	elavl4	86	36.145
ENSONIG00000006871	-	59	37.349	ENSONIG00000001538	elavl3	89	37.349
ENSONIG00000006871	-	98	69.640	ENSONIG00000017314	pabpc1l	99	69.484
ENSONIG00000006871	-	59	33.684	ENSONIG00000019162	rbms2a	50	33.684
ENSONIG00000006871	-	59	33.684	ENSONIG00000012198	rbms2b	53	33.684
ENSONIG00000006871	-	53	39.759	ENSONIG00000004856	celf5a	60	37.634
ENSONIG00000006871	-	98	76.592	ENSONIG00000008176	pabpc4	98	76.752
ENSONIG00000006871	-	59	37.349	ENSONIG00000007552	ELAVL2	91	37.349

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000006871	-	58	80.102	ENSG00000184388	PABPC1L2B	98	80.102	Homo_sapiens
ENSONIG00000006871	-	58	80.102	ENSG00000186288	PABPC1L2A	98	80.102	Homo_sapiens
ENSONIG00000006871	-	100	90.282	ENSAPOG00000017776	pabpc1b	100	90.282	Acanthochromis_polyacanthus
ENSONIG00000006871	-	100	97.638	ENSAPOG00000015105	pabpc1a	100	97.638	Acanthochromis_polyacanthus
ENSONIG00000006871	-	58	80.102	ENSAMEG00000019441	-	98	80.102	Ailuropoda_melanoleuca
ENSONIG00000006871	-	100	98.425	ENSACIG00000004685	pabpc1a	100	98.425	Amphilophus_citrinellus
ENSONIG00000006871	-	100	86.207	ENSACIG00000018366	pabpc1b	100	86.207	Amphilophus_citrinellus
ENSONIG00000006871	-	100	89.969	ENSAOCG00000019839	pabpc1b	100	89.969	Amphiprion_ocellaris
ENSONIG00000006871	-	100	97.480	ENSAOCG00000011656	pabpc1a	100	97.480	Amphiprion_ocellaris
ENSONIG00000006871	-	100	89.969	ENSAPEG00000010435	pabpc1b	100	89.969	Amphiprion_percula
ENSONIG00000006871	-	100	97.480	ENSAPEG00000006963	pabpc1a	100	97.480	Amphiprion_percula
ENSONIG00000006871	-	100	96.850	ENSATEG00000024852	pabpc1a	100	96.850	Anabas_testudineus
ENSONIG00000006871	-	100	89.358	ENSATEG00000012917	pabpc1b	100	89.358	Anabas_testudineus
ENSONIG00000006871	-	58	80.102	ENSANAG00000019429	-	98	80.102	Aotus_nancymaae
ENSONIG00000006871	-	58	80.102	ENSANAG00000019431	-	98	80.102	Aotus_nancymaae
ENSONIG00000006871	-	100	99.055	ENSACLG00000009399	pabpc1a	100	99.760	Astatotilapia_calliptera
ENSONIG00000006871	-	100	89.185	ENSACLG00000014335	pabpc1b	100	89.185	Astatotilapia_calliptera
ENSONIG00000006871	-	100	90.125	ENSAMXG00000008599	pabpc1b	100	90.125	Astyanax_mexicanus
ENSONIG00000006871	-	59	77.033	ENSBTAG00000052491	-	98	77.033	Bos_taurus
ENSONIG00000006871	-	59	79.024	ENSBTAG00000050902	-	98	79.024	Bos_taurus
ENSONIG00000006871	-	58	80.102	ENSCJAG00000041326	-	98	80.102	Callithrix_jacchus
ENSONIG00000006871	-	59	79.024	ENSCAFG00020002052	-	98	79.024	Canis_lupus_dingo
ENSONIG00000006871	-	58	80.102	ENSCHIG00000011138	-	98	80.102	Capra_hircus
ENSONIG00000006871	-	58	80.102	ENSCHIG00000006283	-	98	80.102	Capra_hircus
ENSONIG00000006871	-	58	80.102	ENSTSYG00000001775	-	98	80.102	Carlito_syrichta
ENSONIG00000006871	-	58	80.102	ENSCPOG00000009525	-	98	80.102	Cavia_porcellus
ENSONIG00000006871	-	58	80.102	ENSCCAG00000031524	-	98	80.102	Cebus_capucinus
ENSONIG00000006871	-	58	80.102	ENSCATG00000043125	-	98	80.102	Cercocebus_atys
ENSONIG00000006871	-	58	80.102	ENSCATG00000042826	-	98	80.102	Cercocebus_atys
ENSONIG00000006871	-	58	78.061	ENSCLAG00000017409	-	98	78.061	Chinchilla_lanigera
ENSONIG00000006871	-	58	78.061	ENSCLAG00000017412	-	98	78.061	Chinchilla_lanigera
ENSONIG00000006871	-	58	80.102	ENSCSAG00000000102	-	98	80.102	Chlorocebus_sabaeus
ENSONIG00000006871	-	57	80.110	ENSCGRG00001023387	-	96	77.436	Cricetulus_griseus_chok1gshd
ENSONIG00000006871	-	99	96.519	ENSCSEG00000013324	pabpc1a	100	96.519	Cynoglossus_semilaevis
ENSONIG00000006871	-	100	88.558	ENSCSEG00000015241	-	100	88.558	Cynoglossus_semilaevis
ENSONIG00000006871	-	100	87.637	ENSCVAG00000005489	pabpc1b	100	87.637	Cyprinodon_variegatus
ENSONIG00000006871	-	100	97.165	ENSCVAG00000021872	pabpc1a	100	97.165	Cyprinodon_variegatus
ENSONIG00000006871	-	100	91.223	ENSDARG00000017219	pabpc1a	100	91.223	Danio_rerio
ENSONIG00000006871	-	100	89.185	ENSDARG00000021140	pabpc1b	99	92.199	Danio_rerio
ENSONIG00000006871	-	58	80.423	ENSDNOG00000030926	-	98	78.571	Dasypus_novemcinctus
ENSONIG00000006871	-	58	77.551	ENSDORG00000011362	-	98	77.551	Dipodomys_ordii
ENSONIG00000006871	-	59	78.641	ENSEASG00005010399	-	98	78.641	Equus_asinus_asinus
ENSONIG00000006871	-	59	78.641	ENSECAG00000002620	-	98	78.641	Equus_caballus
ENSONIG00000006871	-	59	76.020	ENSEEUG00000008203	-	98	76.020	Erinaceus_europaeus
ENSONIG00000006871	-	100	88.438	ENSELUG00000015062	-	100	88.438	Esox_lucius
ENSONIG00000006871	-	99	93.553	ENSELUG00000003614	pabpc1a	100	93.553	Esox_lucius
ENSONIG00000006871	-	59	58.621	ENSELUG00000005389	-	97	58.621	Esox_lucius
ENSONIG00000006871	-	58	80.102	ENSFCAG00000039701	-	98	80.102	Felis_catus
ENSONIG00000006871	-	58	80.102	ENSFDAG00000005484	-	98	80.102	Fukomys_damarensis
ENSONIG00000006871	-	100	97.008	ENSFHEG00000018979	pabpc1a	100	97.008	Fundulus_heteroclitus
ENSONIG00000006871	-	100	89.185	ENSFHEG00000008186	pabpc1b	100	89.342	Fundulus_heteroclitus
ENSONIG00000006871	-	100	80.775	ENSGMOG00000002448	-	100	80.775	Gadus_morhua
ENSONIG00000006871	-	99	92.427	ENSGMOG00000013448	pabpc1a	99	92.581	Gadus_morhua
ENSONIG00000006871	-	100	96.693	ENSGAFG00000019750	pabpc1a	100	96.693	Gambusia_affinis
ENSONIG00000006871	-	100	89.812	ENSGAFG00000010193	pabpc1b	100	90.125	Gambusia_affinis
ENSONIG00000006871	-	100	87.442	ENSGACG00000003771	pabpc1b	100	87.597	Gasterosteus_aculeatus
ENSONIG00000006871	-	100	96.535	ENSGACG00000003572	pabpc1a	100	96.535	Gasterosteus_aculeatus
ENSONIG00000006871	-	58	80.102	ENSGGOG00000038606	-	98	80.102	Gorilla_gorilla
ENSONIG00000006871	-	58	80.102	ENSGGOG00000043933	-	98	80.102	Gorilla_gorilla
ENSONIG00000006871	-	100	99.055	ENSHBUG00000020487	pabpc1a	100	99.760	Haplochromis_burtoni
ENSONIG00000006871	-	100	89.185	ENSHBUG00000002075	pabpc1b	100	89.185	Haplochromis_burtoni
ENSONIG00000006871	-	58	79.082	ENSHGLG00000019762	-	98	79.082	Heterocephalus_glaber_female
ENSONIG00000006871	-	58	79.082	ENSHGLG00000019668	-	98	79.082	Heterocephalus_glaber_female
ENSONIG00000006871	-	58	79.082	ENSHGLG00100020854	-	98	79.082	Heterocephalus_glaber_male
ENSONIG00000006871	-	100	97.008	ENSHCOG00000013502	pabpc1a	100	97.008	Hippocampus_comes
ENSONIG00000006871	-	98	71.311	ENSHCOG00000003175	pabpc1b	99	69.453	Hippocampus_comes
ENSONIG00000006871	-	100	90.551	ENSIPUG00000008848	pabpc1a	100	90.551	Ictalurus_punctatus
ENSONIG00000006871	-	100	84.144	ENSIPUG00000010791	-	100	84.144	Ictalurus_punctatus
ENSONIG00000006871	-	71	57.366	ENSIPUG00000021244	-	60	57.366	Ictalurus_punctatus
ENSONIG00000006871	-	78	58.209	ENSIPUG00000018724	-	78	58.209	Ictalurus_punctatus
ENSONIG00000006871	-	58	79.592	ENSSTOG00000022096	-	98	79.592	Ictidomys_tridecemlineatus
ENSONIG00000006871	-	58	79.592	ENSSTOG00000026028	-	98	79.592	Ictidomys_tridecemlineatus
ENSONIG00000006871	-	58	78.571	ENSJJAG00000007037	-	98	78.571	Jaculus_jaculus
ENSONIG00000006871	-	100	96.850	ENSKMAG00000000605	pabpc1a	100	96.850	Kryptolebias_marmoratus
ENSONIG00000006871	-	100	88.836	ENSKMAG00000008049	pabpc1b	100	88.994	Kryptolebias_marmoratus
ENSONIG00000006871	-	100	88.871	ENSLBEG00000026845	pabpc1b	100	88.871	Labrus_bergylta
ENSONIG00000006871	-	100	96.535	ENSLBEG00000024002	-	100	96.535	Labrus_bergylta
ENSONIG00000006871	-	58	78.974	ENSLAFG00000023096	-	98	78.974	Loxodonta_africana
ENSONIG00000006871	-	58	79.695	ENSMFAG00000028878	-	98	79.695	Macaca_fascicularis
ENSONIG00000006871	-	58	80.102	ENSMMUG00000037681	-	98	80.102	Macaca_mulatta
ENSONIG00000006871	-	58	80.102	ENSMMUG00000039929	-	98	80.102	Macaca_mulatta
ENSONIG00000006871	-	58	80.102	ENSMMUG00000009740	-	98	80.102	Macaca_mulatta
ENSONIG00000006871	-	58	80.102	ENSMNEG00000037732	-	98	80.102	Macaca_nemestrina
ENSONIG00000006871	-	58	80.102	ENSMLEG00000027495	-	98	80.102	Mandrillus_leucophaeus
ENSONIG00000006871	-	99	99.038	ENSMAMG00000004502	-	100	99.038	Mastacembelus_armatus
ENSONIG00000006871	-	100	89.812	ENSMAMG00000014610	pabpc1b	100	89.812	Mastacembelus_armatus
ENSONIG00000006871	-	100	99.055	ENSMZEG00005025416	pabpc1a	100	99.760	Maylandia_zebra
ENSONIG00000006871	-	100	89.185	ENSMZEG00005026745	pabpc1b	100	89.185	Maylandia_zebra
ENSONIG00000006871	-	58	80.102	ENSMICG00000047642	-	98	80.102	Microcebus_murinus
ENSONIG00000006871	-	100	85.086	ENSMMOG00000018009	pabpc1b	100	84.929	Mola_mola
ENSONIG00000006871	-	99	98.317	ENSMMOG00000018044	pabpc1a	100	98.317	Mola_mola
ENSONIG00000006871	-	98	65.501	ENSMODG00000015024	-	99	64.844	Monodelphis_domestica
ENSONIG00000006871	-	98	72.552	ENSMODG00000013156	-	98	73.003	Monodelphis_domestica
ENSONIG00000006871	-	100	96.693	ENSMALG00000013020	-	100	96.693	Monopterus_albus
ENSONIG00000006871	-	100	83.046	ENSMALG00000006066	pabpc1b	100	84.929	Monopterus_albus
ENSONIG00000006871	-	58	81.967	ENSNGAG00000012688	-	98	78.571	Nannospalax_galili
ENSONIG00000006871	-	100	99.213	ENSNBRG00000003068	-	100	99.760	Neolamprologus_brichardi
ENSONIG00000006871	-	100	89.185	ENSNBRG00000013737	pabpc1b	100	89.185	Neolamprologus_brichardi
ENSONIG00000006871	-	58	80.102	ENSNLEG00000018128	-	98	80.102	Nomascus_leucogenys
ENSONIG00000006871	-	58	79.592	ENSODEG00000018540	-	98	79.592	Octodon_degus
ENSONIG00000006871	-	58	80.102	ENSOCUG00000002565	-	98	80.102	Oryctolagus_cuniculus
ENSONIG00000006871	-	99	85.533	ENSORLG00000003008	-	99	85.374	Oryzias_latipes
ENSONIG00000006871	-	99	98.333	ENSORLG00000002691	pabpc1a	100	98.333	Oryzias_latipes
ENSONIG00000006871	-	100	84.772	ENSORLG00020022259	-	100	84.615	Oryzias_latipes_hni
ENSONIG00000006871	-	100	95.748	ENSORLG00020022398	pabpc1a	100	95.748	Oryzias_latipes_hni
ENSONIG00000006871	-	100	95.591	ENSORLG00015013633	pabpc1	100	95.591	Oryzias_latipes_hsok
ENSONIG00000006871	-	100	85.243	ENSORLG00015010932	-	100	85.086	Oryzias_latipes_hsok
ENSONIG00000006871	-	100	96.378	ENSOMEG00000020219	pabpc1a	100	96.378	Oryzias_melastigma
ENSONIG00000006871	-	93	82.151	ENSOMEG00000013627	pabpc1b	100	82.151	Oryzias_melastigma
ENSONIG00000006871	-	58	80.102	ENSOGAG00000029513	-	98	80.102	Otolemur_garnettii
ENSONIG00000006871	-	58	80.102	ENSOGAG00000026047	-	98	80.102	Otolemur_garnettii
ENSONIG00000006871	-	58	80.102	ENSOARG00000005943	-	98	80.102	Ovis_aries
ENSONIG00000006871	-	58	80.102	ENSPPAG00000012920	-	98	80.102	Pan_paniscus
ENSONIG00000006871	-	58	80.102	ENSPPRG00000011809	-	98	80.102	Panthera_pardus
ENSONIG00000006871	-	58	80.102	ENSPPRG00000011804	-	98	80.102	Panthera_pardus
ENSONIG00000006871	-	58	80.102	ENSPTRG00000028252	-	98	80.102	Pan_troglodytes
ENSONIG00000006871	-	58	80.102	ENSPANG00000011549	-	98	80.102	Papio_anubis
ENSONIG00000006871	-	100	90.125	ENSPKIG00000005676	pabpc1b	100	90.125	Paramormyrops_kingsleyae
ENSONIG00000006871	-	70	92.152	ENSPMGG00000023134	-	97	92.152	Periophthalmus_magnuspinnatus
ENSONIG00000006871	-	70	97.978	ENSPMGG00000022487	pabpc1a	92	97.978	Periophthalmus_magnuspinnatus
ENSONIG00000006871	-	99	71.791	ENSPCIG00000016995	-	55	71.791	Phascolarctos_cinereus
ENSONIG00000006871	-	100	89.342	ENSPFOG00000005917	pabpc1b	100	89.655	Poecilia_formosa
ENSONIG00000006871	-	100	95.363	ENSPFOG00000010815	pabpc1a	100	95.363	Poecilia_formosa
ENSONIG00000006871	-	100	89.655	ENSPLAG00000001388	pabpc1b	100	89.969	Poecilia_latipinna
ENSONIG00000006871	-	100	97.323	ENSPLAG00000004114	pabpc1a	100	97.323	Poecilia_latipinna
ENSONIG00000006871	-	100	97.323	ENSPMEG00000001334	pabpc1a	100	97.323	Poecilia_mexicana
ENSONIG00000006871	-	100	89.342	ENSPMEG00000014399	pabpc1b	100	89.655	Poecilia_mexicana
ENSONIG00000006871	-	99	99.279	ENSPREG00000019595	pabpc1a	100	99.279	Poecilia_reticulata
ENSONIG00000006871	-	100	89.655	ENSPREG00000010911	pabpc1b	100	89.969	Poecilia_reticulata
ENSONIG00000006871	-	58	80.102	ENSPPYG00000020468	-	98	80.102	Pongo_abelii
ENSONIG00000006871	-	59	80.102	ENSPCAG00000005308	-	98	80.102	Procavia_capensis
ENSONIG00000006871	-	58	79.592	ENSPCOG00000026349	-	98	79.592	Propithecus_coquereli
ENSONIG00000006871	-	59	80.513	ENSPVAG00000016117	-	98	80.513	Pteropus_vampyrus
ENSONIG00000006871	-	100	89.185	ENSPNYG00000012578	pabpc1b	100	89.185	Pundamilia_nyererei
ENSONIG00000006871	-	100	99.055	ENSPNYG00000005192	pabpc1a	100	99.055	Pundamilia_nyererei
ENSONIG00000006871	-	100	91.052	ENSPNAG00000028408	pabpc1a	100	90.738	Pygocentrus_nattereri
ENSONIG00000006871	-	100	89.655	ENSPNAG00000024626	pabpc1b	100	89.655	Pygocentrus_nattereri
ENSONIG00000006871	-	58	80.102	ENSRBIG00000027173	-	98	80.102	Rhinopithecus_bieti
ENSONIG00000006871	-	99	89.671	ENSRBIG00000028738	-	95	89.671	Rhinopithecus_bieti
ENSONIG00000006871	-	58	80.102	ENSRROG00000017404	-	98	80.102	Rhinopithecus_roxellana
ENSONIG00000006871	-	98	63.622	ENSSHAG00000000511	-	100	63.622	Sarcophilus_harrisii
ENSONIG00000006871	-	100	89.953	ENSSFOG00015006662	pabpc1a	100	90.110	Scleropages_formosus
ENSONIG00000006871	-	100	89.953	ENSSFOG00015002752	-	100	89.953	Scleropages_formosus
ENSONIG00000006871	-	69	78.613	ENSSFOG00015019668	-	88	78.613	Scleropages_formosus
ENSONIG00000006871	-	100	88.715	ENSSMAG00000006869	pabpc1b	100	88.871	Scophthalmus_maximus
ENSONIG00000006871	-	100	96.850	ENSSMAG00000010803	pabpc1a	100	96.850	Scophthalmus_maximus
ENSONIG00000006871	-	100	88.245	ENSSDUG00000011965	pabpc1b	100	88.401	Seriola_dumerili
ENSONIG00000006871	-	100	97.165	ENSSDUG00000006675	pabpc1a	100	97.165	Seriola_dumerili
ENSONIG00000006871	-	100	89.891	ENSSLDG00000014156	pabpc1b	100	90.047	Seriola_lalandi_dorsalis
ENSONIG00000006871	-	100	97.165	ENSSLDG00000011661	pabpc1a	100	97.165	Seriola_lalandi_dorsalis
ENSONIG00000006871	-	100	97.795	ENSSPAG00000014453	-	100	97.795	Stegastes_partitus
ENSONIG00000006871	-	100	90.439	ENSSPAG00000019265	pabpc1b	100	90.752	Stegastes_partitus
ENSONIG00000006871	-	58	80.102	ENSSSCG00000032167	-	98	80.102	Sus_scrofa
ENSONIG00000006871	-	58	80.102	ENSSSCG00000036336	-	98	80.102	Sus_scrofa
ENSONIG00000006871	-	100	94.340	ENSTRUG00000011577	-	100	94.497	Takifugu_rubripes
ENSONIG00000006871	-	100	86.228	ENSTRUG00000003767	-	100	86.228	Takifugu_rubripes
ENSONIG00000006871	-	100	86.604	ENSTNIG00000009153	pabpc1b	100	86.604	Tetraodon_nigroviridis
ENSONIG00000006871	-	100	91.473	ENSTNIG00000013307	pabpc1a	100	91.628	Tetraodon_nigroviridis
ENSONIG00000006871	-	58	80.102	ENSTTRG00000013181	-	98	80.102	Tursiops_truncatus
ENSONIG00000006871	-	58	80.102	ENSUAMG00000008089	-	98	80.102	Ursus_americanus
ENSONIG00000006871	-	97	53.883	ENSUMAG00000023926	-	89	69.890	Ursus_maritimus
ENSONIG00000006871	-	58	80.102	ENSUMAG00000003364	-	98	80.102	Ursus_maritimus
ENSONIG00000006871	-	58	79.000	ENSVVUG00000015892	-	97	79.000	Vulpes_vulpes
ENSONIG00000006871	-	97	46.279	ENSXETG00000015439	-	97	45.977	Xenopus_tropicalis
ENSONIG00000006871	-	100	91.654	ENSXCOG00000017066	pabpc1a	100	91.654	Xiphophorus_couchianus
ENSONIG00000006871	-	100	85.737	ENSXCOG00000019901	pabpc1b	100	85.423	Xiphophorus_couchianus
ENSONIG00000006871	-	100	97.008	ENSXMAG00000002555	pabpc1a	100	97.008	Xiphophorus_maculatus
ENSONIG00000006871	-	100	89.812	ENSXMAG00000003753	pabpc1b	100	90.125	Xiphophorus_maculatus