EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000007249 (Gene tree)
Gene ID: 100696474
Gene Symbol: trub1
Alias: -
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 4703 bases
Position: chrGL831279.1:717139-721841
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000009140	TruB_N	PF01509.18	6.8e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000009145	-	825	-	ENSONIP00000009140	275 (aa)	-	I3JJU6

Gene Model

Click here to download ENSONIG00000007249's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000007249's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000007249	trub1	71	30.500	ENSONIG00000004230	trub2	60	30.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000007249	trub1	89	67.480	ENSG00000165832	TRUB1	70	67.480	Homo_sapiens
ENSONIG00000007249	trub1	95	89.313	ENSAPOG00000020565	trub1	98	88.476	Acanthochromis_polyacanthus
ENSONIG00000007249	trub1	89	67.742	ENSAMEG00000014931	TRUB1	70	67.742	Ailuropoda_melanoleuca
ENSONIG00000007249	trub1	100	86.909	ENSACIG00000003060	trub1	92	86.909	Amphilophus_citrinellus
ENSONIG00000007249	trub1	95	88.931	ENSAOCG00000017188	trub1	98	88.104	Amphiprion_ocellaris
ENSONIG00000007249	trub1	95	89.313	ENSAPEG00000015209	trub1	98	88.476	Amphiprion_percula
ENSONIG00000007249	trub1	89	88.980	ENSATEG00000023291	trub1	88	88.980	Anabas_testudineus
ENSONIG00000007249	trub1	89	69.672	ENSAPLG00000006808	TRUB1	87	69.672	Anas_platyrhynchos
ENSONIG00000007249	trub1	93	66.406	ENSACAG00000009282	TRUB1	91	67.063	Anolis_carolinensis
ENSONIG00000007249	trub1	89	67.886	ENSANAG00000022870	TRUB1	70	67.886	Aotus_nancymaae
ENSONIG00000007249	trub1	100	96.000	ENSACLG00000000823	trub1	99	96.000	Astatotilapia_calliptera
ENSONIG00000007249	trub1	95	75.096	ENSAMXG00000015845	trub1	87	75.096	Astyanax_mexicanus
ENSONIG00000007249	trub1	89	67.886	ENSBTAG00000012955	TRUB1	70	67.886	Bos_taurus
ENSONIG00000007249	trub1	89	67.886	ENSCJAG00000047815	TRUB1	70	67.886	Callithrix_jacchus
ENSONIG00000007249	trub1	89	68.293	ENSCAFG00000011688	TRUB1	70	68.293	Canis_familiaris
ENSONIG00000007249	trub1	89	68.293	ENSCAFG00020013237	TRUB1	70	68.293	Canis_lupus_dingo
ENSONIG00000007249	trub1	89	68.293	ENSCHIG00000020884	TRUB1	74	68.293	Capra_hircus
ENSONIG00000007249	trub1	89	67.073	ENSTSYG00000000446	TRUB1	70	67.073	Carlito_syrichta
ENSONIG00000007249	trub1	77	61.321	ENSCAPG00000017088	TRUB1	82	61.321	Cavia_aperea
ENSONIG00000007249	trub1	72	60.199	ENSCPOG00000030129	-	78	60.199	Cavia_porcellus
ENSONIG00000007249	trub1	67	64.481	ENSCPOG00000040236	-	75	64.481	Cavia_porcellus
ENSONIG00000007249	trub1	89	67.886	ENSCCAG00000028842	TRUB1	70	67.886	Cebus_capucinus
ENSONIG00000007249	trub1	89	67.886	ENSCATG00000033431	TRUB1	70	67.886	Cercocebus_atys
ENSONIG00000007249	trub1	67	63.934	ENSCLAG00000008664	TRUB1	75	63.934	Chinchilla_lanigera
ENSONIG00000007249	trub1	89	67.886	ENSCSAG00000004891	TRUB1	70	67.886	Chlorocebus_sabaeus
ENSONIG00000007249	trub1	88	60.331	ENSCHOG00000011931	TRUB1	70	60.331	Choloepus_hoffmanni
ENSONIG00000007249	trub1	89	70.612	ENSCPBG00000003051	TRUB1	84	70.612	Chrysemys_picta_bellii
ENSONIG00000007249	trub1	89	67.886	ENSCANG00000029445	TRUB1	70	67.886	Colobus_angolensis_palliatus
ENSONIG00000007249	trub1	77	68.545	ENSCGRG00001016772	-	86	60.305	Cricetulus_griseus_chok1gshd
ENSONIG00000007249	trub1	87	59.833	ENSCGRG00001010322	-	70	56.322	Cricetulus_griseus_chok1gshd
ENSONIG00000007249	trub1	87	67.782	ENSCGRG00000010806	Trub1	75	66.667	Cricetulus_griseus_crigri
ENSONIG00000007249	trub1	96	77.273	ENSCSEG00000011261	trub1	87	76.296	Cynoglossus_semilaevis
ENSONIG00000007249	trub1	91	81.673	ENSCVAG00000008791	trub1	77	81.673	Cyprinodon_variegatus
ENSONIG00000007249	trub1	90	74.597	ENSDARG00000053805	trub1	99	82.353	Danio_rerio
ENSONIG00000007249	trub1	94	64.093	ENSDNOG00000001069	TRUB1	74	64.093	Dasypus_novemcinctus
ENSONIG00000007249	trub1	87	67.782	ENSDORG00000010431	Trub1	71	66.667	Dipodomys_ordii
ENSONIG00000007249	trub1	65	65.116	ENSETEG00000009183	TRUB1	51	65.116	Echinops_telfairi
ENSONIG00000007249	trub1	89	66.667	ENSEASG00005014739	TRUB1	70	66.667	Equus_asinus_asinus
ENSONIG00000007249	trub1	89	66.667	ENSECAG00000007177	TRUB1	70	66.667	Equus_caballus
ENSONIG00000007249	trub1	89	59.756	ENSEEUG00000013993	TRUB1	73	57.854	Erinaceus_europaeus
ENSONIG00000007249	trub1	97	77.154	ENSELUG00000000502	trub1	93	77.154	Esox_lucius
ENSONIG00000007249	trub1	89	67.886	ENSFCAG00000031927	TRUB1	70	67.886	Felis_catus
ENSONIG00000007249	trub1	79	69.444	ENSFALG00000002232	TRUB1	83	69.444	Ficedula_albicollis
ENSONIG00000007249	trub1	67	65.027	ENSFDAG00000008140	TRUB1	75	65.027	Fukomys_damarensis
ENSONIG00000007249	trub1	98	82.900	ENSFHEG00000004016	trub1	92	82.900	Fundulus_heteroclitus
ENSONIG00000007249	trub1	94	65.517	ENSGALG00000009091	TRUB1	92	65.517	Gallus_gallus
ENSONIG00000007249	trub1	92	82.353	ENSGAFG00000009193	trub1	89	81.176	Gambusia_affinis
ENSONIG00000007249	trub1	71	89.286	ENSGACG00000015387	trub1	96	89.286	Gasterosteus_aculeatus
ENSONIG00000007249	trub1	89	71.020	ENSGAGG00000009758	TRUB1	70	71.020	Gopherus_agassizii
ENSONIG00000007249	trub1	89	67.480	ENSGGOG00000004583	TRUB1	70	67.480	Gorilla_gorilla
ENSONIG00000007249	trub1	100	95.273	ENSHBUG00000016787	trub1	99	95.273	Haplochromis_burtoni
ENSONIG00000007249	trub1	89	66.667	ENSHGLG00000015314	TRUB1	70	66.667	Heterocephalus_glaber_female
ENSONIG00000007249	trub1	67	64.481	ENSHGLG00100009183	TRUB1	77	64.481	Heterocephalus_glaber_male
ENSONIG00000007249	trub1	98	83.643	ENSHCOG00000017877	trub1	97	83.026	Hippocampus_comes
ENSONIG00000007249	trub1	91	75.904	ENSIPUG00000017559	trub1	88	75.904	Ictalurus_punctatus
ENSONIG00000007249	trub1	89	67.886	ENSSTOG00000003641	TRUB1	73	67.480	Ictidomys_tridecemlineatus
ENSONIG00000007249	trub1	89	66.667	ENSJJAG00000011800	Trub1	72	66.667	Jaculus_jaculus
ENSONIG00000007249	trub1	97	85.714	ENSKMAG00000006232	trub1	96	85.714	Kryptolebias_marmoratus
ENSONIG00000007249	trub1	99	84.615	ENSLBEG00000026722	trub1	95	84.615	Labrus_bergylta
ENSONIG00000007249	trub1	94	71.042	ENSLACG00000014885	TRUB1	86	71.042	Latimeria_chalumnae
ENSONIG00000007249	trub1	95	74.809	ENSLOCG00000012979	trub1	88	74.809	Lepisosteus_oculatus
ENSONIG00000007249	trub1	93	66.275	ENSLAFG00000015452	TRUB1	74	66.023	Loxodonta_africana
ENSONIG00000007249	trub1	89	67.886	ENSMFAG00000031767	TRUB1	70	67.886	Macaca_fascicularis
ENSONIG00000007249	trub1	89	67.886	ENSMMUG00000001902	TRUB1	70	67.886	Macaca_mulatta
ENSONIG00000007249	trub1	89	62.602	ENSMNEG00000044646	TRUB1	69	63.008	Macaca_nemestrina
ENSONIG00000007249	trub1	89	67.886	ENSMLEG00000042655	TRUB1	70	67.886	Mandrillus_leucophaeus
ENSONIG00000007249	trub1	100	95.636	ENSMZEG00005024095	trub1	99	95.636	Maylandia_zebra
ENSONIG00000007249	trub1	94	66.284	ENSMGAG00000011135	TRUB1	90	66.284	Meleagris_gallopavo
ENSONIG00000007249	trub1	87	65.690	ENSMAUG00000011101	Trub1	72	64.634	Mesocricetus_auratus
ENSONIG00000007249	trub1	89	67.073	ENSMICG00000016324	TRUB1	70	67.073	Microcebus_murinus
ENSONIG00000007249	trub1	92	65.079	ENSMOCG00000017759	Trub1	85	61.131	Microtus_ochrogaster
ENSONIG00000007249	trub1	89	68.852	ENSMODG00000009676	TRUB1	69	67.331	Monodelphis_domestica
ENSONIG00000007249	trub1	90	66.129	MGP_CAROLIEiJ_G0023100	Trub1	82	62.069	Mus_caroli
ENSONIG00000007249	trub1	90	65.323	ENSMUSG00000025086	Trub1	82	61.084	Mus_musculus
ENSONIG00000007249	trub1	92	64.683	MGP_PahariEiJ_G0014588	Trub1	73	65.447	Mus_pahari
ENSONIG00000007249	trub1	90	65.323	MGP_SPRETEiJ_G0024021	Trub1	82	61.084	Mus_spretus
ENSONIG00000007249	trub1	89	68.293	ENSMPUG00000003556	TRUB1	70	68.293	Mustela_putorius_furo
ENSONIG00000007249	trub1	89	67.073	ENSMLUG00000017686	TRUB1	72	67.073	Myotis_lucifugus
ENSONIG00000007249	trub1	94	64.479	ENSNGAG00000018682	Trub1	74	64.479	Nannospalax_galili
ENSONIG00000007249	trub1	95	95.437	ENSNBRG00000023393	trub1	94	95.437	Neolamprologus_brichardi
ENSONIG00000007249	trub1	89	67.480	ENSNLEG00000016345	TRUB1	70	67.480	Nomascus_leucogenys
ENSONIG00000007249	trub1	73	69.154	ENSMEUG00000006603	TRUB1	77	67.308	Notamacropus_eugenii
ENSONIG00000007249	trub1	89	67.480	ENSOPRG00000009371	TRUB1	72	67.480	Ochotona_princeps
ENSONIG00000007249	trub1	89	65.447	ENSODEG00000010854	TRUB1	70	65.447	Octodon_degus
ENSONIG00000007249	trub1	90	67.206	ENSOANG00000001556	TRUB1	82	67.068	Ornithorhynchus_anatinus
ENSONIG00000007249	trub1	89	66.260	ENSOCUG00000009456	TRUB1	71	66.260	Oryctolagus_cuniculus
ENSONIG00000007249	trub1	98	81.041	ENSORLG00000029719	trub1	96	81.041	Oryzias_latipes
ENSONIG00000007249	trub1	98	81.041	ENSORLG00020016767	trub1	95	81.041	Oryzias_latipes_hni
ENSONIG00000007249	trub1	100	79.636	ENSORLG00015014728	trub1	98	79.636	Oryzias_latipes_hsok
ENSONIG00000007249	trub1	94	82.239	ENSOMEG00000014556	trub1	91	82.239	Oryzias_melastigma
ENSONIG00000007249	trub1	89	67.886	ENSOGAG00000015895	TRUB1	70	67.886	Otolemur_garnettii
ENSONIG00000007249	trub1	89	66.798	ENSOARG00000015591	TRUB1	72	66.798	Ovis_aries
ENSONIG00000007249	trub1	89	67.480	ENSPPAG00000043645	TRUB1	70	67.480	Pan_paniscus
ENSONIG00000007249	trub1	89	67.480	ENSPPRG00000007096	TRUB1	70	67.480	Panthera_pardus
ENSONIG00000007249	trub1	89	67.480	ENSPTIG00000006378	TRUB1	70	67.480	Panthera_tigris_altaica
ENSONIG00000007249	trub1	89	67.480	ENSPTRG00000002964	TRUB1	70	67.480	Pan_troglodytes
ENSONIG00000007249	trub1	89	67.886	ENSPANG00000020712	TRUB1	70	67.886	Papio_anubis
ENSONIG00000007249	trub1	61	80.952	ENSPKIG00000003852	trub1	72	80.952	Paramormyrops_kingsleyae
ENSONIG00000007249	trub1	91	70.000	ENSPSIG00000012877	TRUB1	86	70.000	Pelodiscus_sinensis
ENSONIG00000007249	trub1	97	78.195	ENSPMGG00000000075	trub1	94	78.195	Periophthalmus_magnuspinnatus
ENSONIG00000007249	trub1	89	67.886	ENSPEMG00000011156	Trub1	72	67.886	Peromyscus_maniculatus_bairdii
ENSONIG00000007249	trub1	89	68.852	ENSPCIG00000009729	TRUB1	68	67.470	Phascolarctos_cinereus
ENSONIG00000007249	trub1	93	82.422	ENSPFOG00000009950	trub1	94	82.422	Poecilia_formosa
ENSONIG00000007249	trub1	98	81.041	ENSPLAG00000013855	trub1	94	81.041	Poecilia_latipinna
ENSONIG00000007249	trub1	98	81.041	ENSPMEG00000009064	trub1	97	81.041	Poecilia_mexicana
ENSONIG00000007249	trub1	98	80.669	ENSPREG00000003343	trub1	97	80.669	Poecilia_reticulata
ENSONIG00000007249	trub1	89	67.073	ENSPPYG00000002676	TRUB1	70	67.073	Pongo_abelii
ENSONIG00000007249	trub1	94	60.385	ENSPCAG00000008427	TRUB1	74	60.385	Procavia_capensis
ENSONIG00000007249	trub1	89	61.789	ENSPCOG00000024360	TRUB1	69	60.976	Propithecus_coquereli
ENSONIG00000007249	trub1	73	67.822	ENSPVAG00000007575	TRUB1	77	67.822	Pteropus_vampyrus
ENSONIG00000007249	trub1	100	95.636	ENSPNYG00000018614	trub1	99	95.636	Pundamilia_nyererei
ENSONIG00000007249	trub1	95	65.134	ENSPNAG00000006881	trub1	85	64.368	Pygocentrus_nattereri
ENSONIG00000007249	trub1	94	63.320	ENSRNOG00000017321	Trub1	76	63.320	Rattus_norvegicus
ENSONIG00000007249	trub1	89	59.274	ENSRBIG00000033423	TRUB1	68	59.274	Rhinopithecus_bieti
ENSONIG00000007249	trub1	89	67.886	ENSRROG00000033902	TRUB1	70	67.886	Rhinopithecus_roxellana
ENSONIG00000007249	trub1	89	67.886	ENSSBOG00000024237	TRUB1	70	67.886	Saimiri_boliviensis_boliviensis
ENSONIG00000007249	trub1	77	69.767	ENSSHAG00000009346	TRUB1	72	69.767	Sarcophilus_harrisii
ENSONIG00000007249	trub1	94	77.992	ENSSFOG00015022124	trub1	88	77.992	Scleropages_formosus
ENSONIG00000007249	trub1	96	87.925	ENSSMAG00000001020	trub1	94	87.925	Scophthalmus_maximus
ENSONIG00000007249	trub1	98	86.617	ENSSDUG00000016414	trub1	97	86.617	Seriola_dumerili
ENSONIG00000007249	trub1	99	86.081	ENSSLDG00000015486	trub1	98	86.081	Seriola_lalandi_dorsalis
ENSONIG00000007249	trub1	95	67.681	ENSSPUG00000001642	TRUB1	90	67.681	Sphenodon_punctatus
ENSONIG00000007249	trub1	99	86.447	ENSSPAG00000001217	trub1	98	86.447	Stegastes_partitus
ENSONIG00000007249	trub1	94	66.023	ENSSSCG00000010653	TRUB1	76	66.023	Sus_scrofa
ENSONIG00000007249	trub1	89	68.980	ENSTGUG00000010971	TRUB1	90	67.460	Taeniopygia_guttata
ENSONIG00000007249	trub1	82	56.000	ENSTBEG00000002880	TRUB1	88	56.000	Tupaia_belangeri
ENSONIG00000007249	trub1	73	67.327	ENSTTRG00000005767	TRUB1	77	67.327	Tursiops_truncatus
ENSONIG00000007249	trub1	89	68.293	ENSUAMG00000024876	TRUB1	70	68.293	Ursus_americanus
ENSONIG00000007249	trub1	89	68.293	ENSUMAG00000002411	TRUB1	73	68.293	Ursus_maritimus
ENSONIG00000007249	trub1	89	68.293	ENSVPAG00000005507	TRUB1	70	68.293	Vicugna_pacos
ENSONIG00000007249	trub1	89	68.293	ENSVVUG00000010085	TRUB1	59	68.293	Vulpes_vulpes
ENSONIG00000007249	trub1	89	67.347	ENSXETG00000023828	trub1	88	67.347	Xenopus_tropicalis
ENSONIG00000007249	trub1	88	85.062	ENSXCOG00000017847	trub1	85	85.062	Xiphophorus_couchianus
ENSONIG00000007249	trub1	98	81.041	ENSXMAG00000014701	trub1	97	81.041	Xiphophorus_maculatus