EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000007676 (Gene tree)
Gene ID: 100712540
Gene Symbol: cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 17175 bases
Position: chrGL831159.1:3078721-3095895
Accession: ZDB-GENE-040709-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000009676	CPSF_A	PF03178.15	7.9e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000009682	-	4329	-	ENSONIP00000009676	1442 (aa)	-	I3JLD2

Gene Model

Click here to download ENSONIG00000007676's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000007676's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000007676	cpsf1	100	79.599	ENSG00000071894	CPSF1	100	79.806	Homo_sapiens
ENSONIG00000007676	cpsf1	100	91.751	ENSAPOG00000019621	cpsf1	100	92.224	Acanthochromis_polyacanthus
ENSONIG00000007676	cpsf1	97	78.658	ENSAMEG00000005557	CPSF1	99	78.587	Ailuropoda_melanoleuca
ENSONIG00000007676	cpsf1	100	95.423	ENSACIG00000006112	cpsf1	100	95.423	Amphilophus_citrinellus
ENSONIG00000007676	cpsf1	100	93.370	ENSAOCG00000007120	cpsf1	100	93.232	Amphiprion_ocellaris
ENSONIG00000007676	cpsf1	100	94.555	ENSAPEG00000005755	cpsf1	100	94.555	Amphiprion_percula
ENSONIG00000007676	cpsf1	100	91.020	ENSATEG00000011097	cpsf1	100	91.425	Anabas_testudineus
ENSONIG00000007676	cpsf1	93	75.481	ENSACAG00000009655	CPSF1	100	75.353	Anolis_carolinensis
ENSONIG00000007676	cpsf1	100	79.792	ENSANAG00000036514	CPSF1	100	80.069	Aotus_nancymaae
ENSONIG00000007676	cpsf1	99	96.241	ENSACLG00000012231	cpsf1	99	96.129	Astatotilapia_calliptera
ENSONIG00000007676	cpsf1	100	81.038	ENSAMXG00000008485	cpsf1	100	80.761	Astyanax_mexicanus
ENSONIG00000007676	cpsf1	100	78.668	ENSBTAG00000008355	CPSF1	100	79.511	Bos_taurus
ENSONIG00000007676	cpsf1	100	32.305	WBGene00022301	cpsf-1	99	41.076	Caenorhabditis_elegans
ENSONIG00000007676	cpsf1	100	80.138	ENSCJAG00000021421	CPSF1	100	80.000	Callithrix_jacchus
ENSONIG00000007676	cpsf1	96	80.086	ENSCAFG00000001600	CPSF1	100	80.360	Canis_familiaris
ENSONIG00000007676	cpsf1	100	79.544	ENSCAFG00020020821	CPSF1	100	79.820	Canis_lupus_dingo
ENSONIG00000007676	cpsf1	100	76.332	ENSCHIG00000015833	CPSF1	100	76.039	Capra_hircus
ENSONIG00000007676	cpsf1	100	80.554	ENSTSYG00000028560	CPSF1	100	80.346	Carlito_syrichta
ENSONIG00000007676	cpsf1	97	79.685	ENSCAPG00000014921	CPSF1	99	79.542	Cavia_aperea
ENSONIG00000007676	cpsf1	100	79.031	ENSCPOG00000011448	CPSF1	100	78.893	Cavia_porcellus
ENSONIG00000007676	cpsf1	100	80.346	ENSCCAG00000037658	CPSF1	100	80.138	Cebus_capucinus
ENSONIG00000007676	cpsf1	100	79.516	ENSCATG00000037234	CPSF1	100	79.862	Cercocebus_atys
ENSONIG00000007676	cpsf1	100	80.471	ENSCLAG00000012166	CPSF1	100	80.332	Chinchilla_lanigera
ENSONIG00000007676	cpsf1	100	80.000	ENSCSAG00000008502	CPSF1	100	79.862	Chlorocebus_sabaeus
ENSONIG00000007676	cpsf1	99	81.691	ENSCPBG00000018910	CPSF1	96	81.831	Chrysemys_picta_bellii
ENSONIG00000007676	cpsf1	96	48.814	ENSCING00000000514	-	100	48.670	Ciona_intestinalis
ENSONIG00000007676	cpsf1	99	49.381	ENSCSAVG00000002293	-	99	53.241	Ciona_savignyi
ENSONIG00000007676	cpsf1	98	76.782	ENSCANG00000032760	CPSF1	100	79.167	Colobus_angolensis_palliatus
ENSONIG00000007676	cpsf1	100	80.125	ENSCGRG00001016344	Cpsf1	100	79.848	Cricetulus_griseus_chok1gshd
ENSONIG00000007676	cpsf1	100	78.463	ENSCGRG00000003118	Cpsf1	100	78.324	Cricetulus_griseus_crigri
ENSONIG00000007676	cpsf1	100	88.704	ENSCSEG00000013464	cpsf1	100	88.843	Cynoglossus_semilaevis
ENSONIG00000007676	cpsf1	85	87.159	ENSCVAG00000014059	cpsf1	100	81.019	Cyprinodon_variegatus
ENSONIG00000007676	cpsf1	100	87.741	ENSDARG00000034178	cpsf1	100	87.741	Danio_rerio
ENSONIG00000007676	cpsf1	57	82.659	ENSDNOG00000043654	CPSF1	94	82.370	Dasypus_novemcinctus
ENSONIG00000007676	cpsf1	97	80.273	ENSDORG00000006278	Cpsf1	99	80.129	Dipodomys_ordii
ENSONIG00000007676	cpsf1	100	44.459	FBgn0024698	Cpsf160	100	44.527	Drosophila_melanogaster
ENSONIG00000007676	cpsf1	80	83.893	ENSETEG00000006022	CPSF1	83	83.893	Echinops_telfairi
ENSONIG00000007676	cpsf1	100	79.889	ENSEASG00005010774	CPSF1	100	80.028	Equus_asinus_asinus
ENSONIG00000007676	cpsf1	100	79.751	ENSECAG00000022209	CPSF1	100	79.889	Equus_caballus
ENSONIG00000007676	cpsf1	100	79.972	ENSEEUG00000000471	CPSF1	100	79.627	Erinaceus_europaeus
ENSONIG00000007676	cpsf1	100	86.479	ENSELUG00000012271	cpsf1	100	86.616	Esox_lucius
ENSONIG00000007676	cpsf1	100	80.540	ENSFDAG00000016060	CPSF1	100	80.402	Fukomys_damarensis
ENSONIG00000007676	cpsf1	100	88.751	ENSFHEG00000016801	cpsf1	100	88.751	Fundulus_heteroclitus
ENSONIG00000007676	cpsf1	100	86.942	ENSGMOG00000000796	cpsf1	100	87.526	Gadus_morhua
ENSONIG00000007676	cpsf1	95	87.029	ENSGAFG00000018890	cpsf1	100	87.179	Gambusia_affinis
ENSONIG00000007676	cpsf1	100	90.640	ENSGACG00000008703	cpsf1	100	90.640	Gasterosteus_aculeatus
ENSONIG00000007676	cpsf1	100	78.690	ENSGAGG00000004276	CPSF1	98	82.831	Gopherus_agassizii
ENSONIG00000007676	cpsf1	100	79.640	ENSGGOG00000016185	CPSF1	100	79.848	Gorilla_gorilla
ENSONIG00000007676	cpsf1	100	97.920	ENSHBUG00000018900	cpsf1	100	97.920	Haplochromis_burtoni
ENSONIG00000007676	cpsf1	100	80.471	ENSHGLG00000016139	CPSF1	100	80.332	Heterocephalus_glaber_female
ENSONIG00000007676	cpsf1	100	80.402	ENSHGLG00100009750	CPSF1	100	79.917	Heterocephalus_glaber_male
ENSONIG00000007676	cpsf1	100	87.788	ENSHCOG00000018509	cpsf1	100	87.992	Hippocampus_comes
ENSONIG00000007676	cpsf1	100	83.791	ENSIPUG00000011259	cpsf1	100	83.791	Ictalurus_punctatus
ENSONIG00000007676	cpsf1	97	79.758	ENSSTOG00000009957	CPSF1	99	79.971	Ictidomys_tridecemlineatus
ENSONIG00000007676	cpsf1	100	80.332	ENSJJAG00000023002	Cpsf1	100	80.194	Jaculus_jaculus
ENSONIG00000007676	cpsf1	91	92.790	ENSKMAG00000001940	cpsf1	99	92.790	Kryptolebias_marmoratus
ENSONIG00000007676	cpsf1	100	90.021	ENSLBEG00000003601	cpsf1	100	89.973	Labrus_bergylta
ENSONIG00000007676	cpsf1	88	79.401	ENSLACG00000000233	CPSF1	92	79.281	Latimeria_chalumnae
ENSONIG00000007676	cpsf1	100	83.782	ENSLOCG00000008484	cpsf1	100	84.069	Lepisosteus_oculatus
ENSONIG00000007676	cpsf1	97	79.786	ENSLAFG00000022601	CPSF1	100	79.714	Loxodonta_africana
ENSONIG00000007676	cpsf1	100	79.516	ENSMFAG00000037013	CPSF1	100	79.723	Macaca_fascicularis
ENSONIG00000007676	cpsf1	100	79.516	ENSMMUG00000007380	CPSF1	100	79.723	Macaca_mulatta
ENSONIG00000007676	cpsf1	97	79.957	ENSMNEG00000043564	CPSF1	99	80.287	Macaca_nemestrina
ENSONIG00000007676	cpsf1	100	79.516	ENSMLEG00000043010	CPSF1	100	79.723	Mandrillus_leucophaeus
ENSONIG00000007676	cpsf1	100	91.886	ENSMAMG00000003803	cpsf1	100	92.022	Mastacembelus_armatus
ENSONIG00000007676	cpsf1	100	94.175	ENSMZEG00005001168	cpsf1	100	94.175	Maylandia_zebra
ENSONIG00000007676	cpsf1	100	80.055	ENSMAUG00000003601	Cpsf1	100	79.709	Mesocricetus_auratus
ENSONIG00000007676	cpsf1	100	79.917	ENSMICG00000015767	CPSF1	100	79.848	Microcebus_murinus
ENSONIG00000007676	cpsf1	100	79.848	ENSMOCG00000022758	Cpsf1	100	79.709	Microtus_ochrogaster
ENSONIG00000007676	cpsf1	100	92.862	ENSMMOG00000021245	cpsf1	100	92.585	Mola_mola
ENSONIG00000007676	cpsf1	100	79.959	ENSMODG00000010755	CPSF1	100	80.096	Monodelphis_domestica
ENSONIG00000007676	cpsf1	100	91.198	ENSMALG00000020545	cpsf1	100	91.469	Monopterus_albus
ENSONIG00000007676	cpsf1	100	80.402	MGP_CAROLIEiJ_G0019936	Cpsf1	100	80.263	Mus_caroli
ENSONIG00000007676	cpsf1	100	80.402	ENSMUSG00000034022	Cpsf1	100	80.263	Mus_musculus
ENSONIG00000007676	cpsf1	100	80.471	MGP_PahariEiJ_G0019946	Cpsf1	100	80.332	Mus_pahari
ENSONIG00000007676	cpsf1	100	80.471	MGP_SPRETEiJ_G0020839	Cpsf1	100	80.332	Mus_spretus
ENSONIG00000007676	cpsf1	94	80.178	ENSMPUG00000006419	CPSF1	93	80.399	Mustela_putorius_furo
ENSONIG00000007676	cpsf1	100	80.125	ENSNGAG00000022460	Cpsf1	100	79.986	Nannospalax_galili
ENSONIG00000007676	cpsf1	100	90.069	ENSNBRG00000000813	cpsf1	100	90.069	Neolamprologus_brichardi
ENSONIG00000007676	cpsf1	86	69.369	ENSNLEG00000010633	-	100	78.704	Nomascus_leucogenys
ENSONIG00000007676	cpsf1	82	85.465	ENSMEUG00000014922	CPSF1	85	85.465	Notamacropus_eugenii
ENSONIG00000007676	cpsf1	60	89.474	ENSOPRG00000004693	-	70	89.474	Ochotona_princeps
ENSONIG00000007676	cpsf1	100	80.540	ENSODEG00000013995	CPSF1	100	80.194	Octodon_degus
ENSONIG00000007676	cpsf1	58	77.143	ENSOANG00000010716	CPSF1	89	77.143	Ornithorhynchus_anatinus
ENSONIG00000007676	cpsf1	100	89.116	ENSORLG00000013544	cpsf1	100	88.980	Oryzias_latipes
ENSONIG00000007676	cpsf1	100	89.116	ENSORLG00020021693	cpsf1	100	88.980	Oryzias_latipes_hni
ENSONIG00000007676	cpsf1	100	89.116	ENSORLG00015009979	cpsf1	100	88.980	Oryzias_latipes_hsok
ENSONIG00000007676	cpsf1	100	89.305	ENSOMEG00000011849	cpsf1	100	89.510	Oryzias_melastigma
ENSONIG00000007676	cpsf1	100	80.277	ENSOGAG00000000315	CPSF1	100	80.069	Otolemur_garnettii
ENSONIG00000007676	cpsf1	100	79.654	ENSPPAG00000019280	CPSF1	100	80.090	Pan_paniscus
ENSONIG00000007676	cpsf1	100	79.654	ENSPTRG00000049288	-	100	80.090	Pan_troglodytes
ENSONIG00000007676	cpsf1	100	78.299	ENSPTRG00000051253	-	100	80.090	Pan_troglodytes
ENSONIG00000007676	cpsf1	97	79.957	ENSPANG00000015005	CPSF1	99	80.287	Papio_anubis
ENSONIG00000007676	cpsf1	100	87.983	ENSPKIG00000002582	cpsf1	100	88.191	Paramormyrops_kingsleyae
ENSONIG00000007676	cpsf1	100	80.096	ENSPCIG00000009035	CPSF1	100	80.234	Phascolarctos_cinereus
ENSONIG00000007676	cpsf1	100	88.152	ENSPFOG00000012870	cpsf1	100	88.152	Poecilia_formosa
ENSONIG00000007676	cpsf1	100	87.889	ENSPREG00000016307	cpsf1	100	88.092	Poecilia_reticulata
ENSONIG00000007676	cpsf1	100	73.029	ENSPPYG00000018973	CPSF1	100	72.614	Pongo_abelii
ENSONIG00000007676	cpsf1	91	84.375	ENSPCAG00000011541	CPSF1	94	84.375	Procavia_capensis
ENSONIG00000007676	cpsf1	100	76.438	ENSPCOG00000020001	CPSF1	100	78.704	Propithecus_coquereli
ENSONIG00000007676	cpsf1	91	87.429	ENSPVAG00000006761	CPSF1	91	87.429	Pteropus_vampyrus
ENSONIG00000007676	cpsf1	100	96.578	ENSPNYG00000004906	cpsf1	100	96.578	Pundamilia_nyererei
ENSONIG00000007676	cpsf1	100	82.735	ENSPNAG00000024395	cpsf1	100	82.597	Pygocentrus_nattereri
ENSONIG00000007676	cpsf1	100	80.194	ENSRNOG00000030705	Cpsf1	100	80.055	Rattus_norvegicus
ENSONIG00000007676	cpsf1	100	79.585	ENSRBIG00000044907	CPSF1	100	79.862	Rhinopithecus_bieti
ENSONIG00000007676	cpsf1	100	79.654	ENSRROG00000044861	CPSF1	100	79.931	Rhinopithecus_roxellana
ENSONIG00000007676	cpsf1	97	80.502	ENSSBOG00000027177	CPSF1	99	80.287	Saimiri_boliviensis_boliviensis
ENSONIG00000007676	cpsf1	100	79.959	ENSSHAG00000006500	CPSF1	100	80.165	Sarcophilus_harrisii
ENSONIG00000007676	cpsf1	100	85.379	ENSSFOG00015004606	cpsf1	100	88.638	Scleropages_formosus
ENSONIG00000007676	cpsf1	100	90.318	ENSSMAG00000020547	cpsf1	100	90.928	Scophthalmus_maximus
ENSONIG00000007676	cpsf1	100	93.698	ENSSDUG00000001100	cpsf1	100	93.490	Seriola_dumerili
ENSONIG00000007676	cpsf1	100	93.490	ENSSLDG00000003619	cpsf1	100	93.490	Seriola_lalandi_dorsalis
ENSONIG00000007676	cpsf1	89	77.177	ENSSARG00000003643	CPSF1	92	77.016	Sorex_araneus
ENSONIG00000007676	cpsf1	96	82.746	ENSSPUG00000014396	CPSF1	99	82.602	Sphenodon_punctatus
ENSONIG00000007676	cpsf1	100	92.422	ENSSPAG00000005349	cpsf1	100	92.760	Stegastes_partitus
ENSONIG00000007676	cpsf1	100	78.784	ENSSSCG00000005906	CPSF1	100	78.922	Sus_scrofa
ENSONIG00000007676	cpsf1	96	89.356	ENSTRUG00000013134	cpsf1	99	88.866	Takifugu_rubripes
ENSONIG00000007676	cpsf1	100	90.666	ENSTNIG00000014027	cpsf1	100	90.666	Tetraodon_nigroviridis
ENSONIG00000007676	cpsf1	77	75.648	ENSTBEG00000001756	CPSF1	91	74.957	Tupaia_belangeri
ENSONIG00000007676	cpsf1	90	83.793	ENSTTRG00000001937	CPSF1	90	83.621	Tursiops_truncatus
ENSONIG00000007676	cpsf1	97	80.214	ENSUAMG00000006476	CPSF1	98	80.143	Ursus_americanus
ENSONIG00000007676	cpsf1	100	88.981	ENSXCOG00000003608	cpsf1	100	89.120	Xiphophorus_couchianus
ENSONIG00000007676	cpsf1	100	88.427	ENSXMAG00000005798	cpsf1	100	88.565	Xiphophorus_maculatus