EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000008632 (Gene tree)
Gene ID: 100703796
Gene Symbol: smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 23429 bases
Position: chrGL831154.1:4543169-4566597
Accession: 100703796
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000010853	EST1	PF10374.9	3.2e-24	1	1
ENSONIP00000010853	EST1_DNA_bind	PF10373.9	2.7e-40	1	1
ENSONIP00000010853	PIN_4	PF13638.6	3.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000010862	-	5705	-	ENSONIP00000010853	1125 (aa)	XP_003443193	I3JPQ9

Gene Model

Click here to download ENSONIG00000008632's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000008632's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000008632	smg5	55	55.429	ENSG00000198952	SMG5	50	59.781	Homo_sapiens
ENSONIG00000008632	smg5	100	91.593	ENSAPOG00000019690	smg5	100	91.947	Acanthochromis_polyacanthus
ENSONIG00000008632	smg5	98	59.367	ENSAMEG00000014458	SMG5	100	58.935	Ailuropoda_melanoleuca
ENSONIG00000008632	smg5	100	86.234	ENSACIG00000001353	smg5	99	86.234	Amphilophus_citrinellus
ENSONIG00000008632	smg5	100	91.918	ENSAOCG00000019483	smg5	100	91.563	Amphiprion_ocellaris
ENSONIG00000008632	smg5	100	91.652	ENSAPEG00000022949	smg5	100	91.563	Amphiprion_percula
ENSONIG00000008632	smg5	100	90.151	ENSATEG00000005348	smg5	100	89.876	Anabas_testudineus
ENSONIG00000008632	smg5	98	63.515	ENSAPLG00000010263	SMG5	100	61.580	Anas_platyrhynchos
ENSONIG00000008632	smg5	92	78.066	ENSANAG00000032899	SMG5	99	60.496	Aotus_nancymaae
ENSONIG00000008632	smg5	100	97.163	ENSACLG00000009311	smg5	100	97.163	Astatotilapia_calliptera
ENSONIG00000008632	smg5	100	79.148	ENSAMXG00000024616	smg5	100	78.508	Astyanax_mexicanus
ENSONIG00000008632	smg5	86	49.756	ENSBTAG00000021747	-	85	49.515	Bos_taurus
ENSONIG00000008632	smg5	92	78.066	ENSCJAG00000005684	SMG5	99	60.496	Callithrix_jacchus
ENSONIG00000008632	smg5	92	76.960	ENSCAFG00000016839	SMG5	99	59.769	Canis_familiaris
ENSONIG00000008632	smg5	92	76.960	ENSCAFG00020006061	SMG5	99	59.769	Canis_lupus_dingo
ENSONIG00000008632	smg5	85	50.000	ENSCHIG00000006323	-	85	50.000	Capra_hircus
ENSONIG00000008632	smg5	92	78.353	ENSCCAG00000027409	SMG5	99	59.965	Cebus_capucinus
ENSONIG00000008632	smg5	55	55.592	ENSCATG00000030539	SMG5	50	59.598	Cercocebus_atys
ENSONIG00000008632	smg5	55	55.592	ENSCSAG00000002120	SMG5	50	59.598	Chlorocebus_sabaeus
ENSONIG00000008632	smg5	51	75.812	ENSCHOG00000008741	-	57	75.812	Choloepus_hoffmanni
ENSONIG00000008632	smg5	94	62.140	ENSCPBG00000025848	SMG5	100	62.117	Chrysemys_picta_bellii
ENSONIG00000008632	smg5	75	37.811	ENSCING00000008706	-	83	37.811	Ciona_intestinalis
ENSONIG00000008632	smg5	99	58.813	ENSCANG00000029208	SMG5	50	54.727	Colobus_angolensis_palliatus
ENSONIG00000008632	smg5	100	85.993	ENSCSEG00000014220	smg5	100	84.752	Cynoglossus_semilaevis
ENSONIG00000008632	smg5	100	71.556	ENSCVAG00000000529	smg5	99	72.178	Cyprinodon_variegatus
ENSONIG00000008632	smg5	100	76.876	ENSDARG00000041481	smg5	100	77.188	Danio_rerio
ENSONIG00000008632	smg5	71	39.560	ENSDNOG00000039862	-	85	38.736	Dasypus_novemcinctus
ENSONIG00000008632	smg5	99	58.703	ENSDNOG00000000051	SMG5	99	57.750	Dasypus_novemcinctus
ENSONIG00000008632	smg5	59	32.484	FBgn0019890	Smg5	63	32.484	Drosophila_melanogaster
ENSONIG00000008632	smg5	75	85.437	ENSETEG00000010336	SMG5	82	85.437	Echinops_telfairi
ENSONIG00000008632	smg5	63	53.790	ENSEBUG00000003739	smg5	82	51.584	Eptatretus_burgeri
ENSONIG00000008632	smg5	66	78.814	ENSEEUG00000012690	SMG5	75	77.465	Erinaceus_europaeus
ENSONIG00000008632	smg5	100	80.902	ENSELUG00000012585	smg5	100	79.841	Esox_lucius
ENSONIG00000008632	smg5	59	64.768	ENSFALG00000001166	-	95	61.584	Ficedula_albicollis
ENSONIG00000008632	smg5	98	60.834	ENSFDAG00000017388	SMG5	100	59.692	Fukomys_damarensis
ENSONIG00000008632	smg5	98	76.965	ENSFHEG00000013939	smg5	94	91.111	Fundulus_heteroclitus
ENSONIG00000008632	smg5	100	78.497	ENSGMOG00000007310	smg5	100	78.497	Gadus_morhua
ENSONIG00000008632	smg5	99	63.798	ENSGALG00000029918	-	99	61.850	Gallus_gallus
ENSONIG00000008632	smg5	93	90.735	ENSGAFG00000021691	smg5	99	91.883	Gambusia_affinis
ENSONIG00000008632	smg5	100	86.131	ENSGACG00000013142	smg5	100	85.136	Gasterosteus_aculeatus
ENSONIG00000008632	smg5	99	64.141	ENSGAGG00000016131	SMG5	99	62.566	Gopherus_agassizii
ENSONIG00000008632	smg5	55	55.360	ENSGGOG00000010932	SMG5	99	60.407	Gorilla_gorilla
ENSONIG00000008632	smg5	100	97.693	ENSHBUG00000008654	smg5	100	97.693	Haplochromis_burtoni
ENSONIG00000008632	smg5	85	76.991	ENSHCOG00000010229	smg5	94	82.410	Hippocampus_comes
ENSONIG00000008632	smg5	100	79.115	ENSIPUG00000006624	Smg5	100	78.338	Ictalurus_punctatus
ENSONIG00000008632	smg5	100	89.343	ENSKMAG00000014586	smg5	100	89.343	Kryptolebias_marmoratus
ENSONIG00000008632	smg5	100	88.899	ENSLBEG00000002145	smg5	100	89.254	Labrus_bergylta
ENSONIG00000008632	smg5	99	57.458	ENSLACG00000010521	SMG5	99	57.293	Latimeria_chalumnae
ENSONIG00000008632	smg5	100	68.491	ENSLOCG00000008380	smg5	99	71.773	Lepisosteus_oculatus
ENSONIG00000008632	smg5	99	60.963	ENSLAFG00000006241	SMG5	99	60.160	Loxodonta_africana
ENSONIG00000008632	smg5	55	55.592	ENSMFAG00000045357	SMG5	50	59.598	Macaca_fascicularis
ENSONIG00000008632	smg5	92	78.588	ENSMMUG00000000090	SMG5	99	60.053	Macaca_mulatta
ENSONIG00000008632	smg5	55	55.429	ENSMNEG00000044425	SMG5	50	59.415	Macaca_nemestrina
ENSONIG00000008632	smg5	99	56.372	ENSMLEG00000041192	SMG5	93	65.463	Mandrillus_leucophaeus
ENSONIG00000008632	smg5	100	88.731	ENSMAMG00000010683	smg5	100	88.642	Mastacembelus_armatus
ENSONIG00000008632	smg5	66	84.097	ENSMZEG00005016543	smg5	100	82.075	Maylandia_zebra
ENSONIG00000008632	smg5	100	84.636	ENSMZEG00005015815	smg5	99	84.192	Maylandia_zebra
ENSONIG00000008632	smg5	100	84.336	ENSMMOG00000017199	smg5	100	85.044	Mola_mola
ENSONIG00000008632	smg5	73	34.232	ENSMODG00000004735	-	86	34.232	Monodelphis_domestica
ENSONIG00000008632	smg5	86	34.332	ENSMODG00000004511	-	79	34.699	Monodelphis_domestica
ENSONIG00000008632	smg5	75	34.071	ENSMODG00000004532	-	89	34.411	Monodelphis_domestica
ENSONIG00000008632	smg5	88	61.284	ENSMODG00000016901	SMG5	98	60.340	Monodelphis_domestica
ENSONIG00000008632	smg5	76	32.594	ENSMODG00000010675	-	88	33.846	Monodelphis_domestica
ENSONIG00000008632	smg5	100	88.622	ENSMALG00000010375	smg5	100	88.267	Monopterus_albus
ENSONIG00000008632	smg5	99	61.710	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSONIG00000008632	smg5	99	61.765	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSONIG00000008632	smg5	99	62.210	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSONIG00000008632	smg5	99	61.586	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSONIG00000008632	smg5	87	76.731	ENSMPUG00000004546	SMG5	100	58.255	Mustela_putorius_furo
ENSONIG00000008632	smg5	78	49.383	ENSNGAG00000012101	-	86	48.655	Nannospalax_galili
ENSONIG00000008632	smg5	99	61.422	ENSNGAG00000020706	Smg5	99	60.267	Nannospalax_galili
ENSONIG00000008632	smg5	97	80.550	ENSNBRG00000004332	smg5	97	80.183	Neolamprologus_brichardi
ENSONIG00000008632	smg5	55	55.754	ENSNLEG00000012439	SMG5	50	59.963	Nomascus_leucogenys
ENSONIG00000008632	smg5	99	60.835	ENSMEUG00000012834	SMG5	99	59.735	Notamacropus_eugenii
ENSONIG00000008632	smg5	99	61.525	ENSOPRG00000009152	SMG5	50	59.232	Ochotona_princeps
ENSONIG00000008632	smg5	79	43.943	ENSOCUG00000023338	-	88	43.187	Oryctolagus_cuniculus
ENSONIG00000008632	smg5	100	84.725	ENSORLG00000016239	smg5	100	85.372	Oryzias_latipes
ENSONIG00000008632	smg5	100	84.991	ENSORLG00020013127	smg5	100	85.448	Oryzias_latipes_hni
ENSONIG00000008632	smg5	100	84.458	ENSORLG00015019014	smg5	100	85.359	Oryzias_latipes_hsok
ENSONIG00000008632	smg5	84	84.534	ENSOMEG00000021330	smg5	93	85.749	Oryzias_melastigma
ENSONIG00000008632	smg5	86	50.243	ENSOARG00000011963	-	86	50.243	Ovis_aries
ENSONIG00000008632	smg5	90	76.427	ENSPTIG00000007892	SMG5	98	56.375	Panthera_tigris_altaica
ENSONIG00000008632	smg5	92	78.118	ENSPTRG00000049282	-	83	76.685	Pan_troglodytes
ENSONIG00000008632	smg5	55	55.592	ENSPANG00000011201	SMG5	50	59.598	Papio_anubis
ENSONIG00000008632	smg5	100	76.444	ENSPKIG00000009402	smg5	100	76.178	Paramormyrops_kingsleyae
ENSONIG00000008632	smg5	98	64.260	ENSPSIG00000015198	SMG5	100	62.613	Pelodiscus_sinensis
ENSONIG00000008632	smg5	100	72.429	ENSPMGG00000010465	smg5	100	71.731	Periophthalmus_magnuspinnatus
ENSONIG00000008632	smg5	84	62.162	ENSPMAG00000000410	smg5	91	62.654	Petromyzon_marinus
ENSONIG00000008632	smg5	99	61.285	ENSPCIG00000018938	SMG5	99	60.444	Phascolarctos_cinereus
ENSONIG00000008632	smg5	100	87.022	ENSPFOG00000010191	smg5	100	87.111	Poecilia_formosa
ENSONIG00000008632	smg5	100	87.022	ENSPLAG00000009332	smg5	100	86.933	Poecilia_latipinna
ENSONIG00000008632	smg5	100	87.111	ENSPMEG00000014105	smg5	100	87.200	Poecilia_mexicana
ENSONIG00000008632	smg5	100	87.378	ENSPREG00000017713	smg5	100	87.289	Poecilia_reticulata
ENSONIG00000008632	smg5	55	55.754	ENSPPYG00000000723	SMG5	50	59.963	Pongo_abelii
ENSONIG00000008632	smg5	99	61.443	ENSPCOG00000004741	SMG5	51	59.963	Propithecus_coquereli
ENSONIG00000008632	smg5	93	64.336	ENSPVAG00000016748	SMG5	93	62.528	Pteropus_vampyrus
ENSONIG00000008632	smg5	100	97.171	ENSPNYG00000013397	smg5	100	97.171	Pundamilia_nyererei
ENSONIG00000008632	smg5	100	78.705	ENSPNAG00000028363	smg5	100	77.768	Pygocentrus_nattereri
ENSONIG00000008632	smg5	55	55.592	ENSRBIG00000027428	SMG5	50	59.598	Rhinopithecus_bieti
ENSONIG00000008632	smg5	55	55.429	ENSRROG00000030035	SMG5	50	59.415	Rhinopithecus_roxellana
ENSONIG00000008632	smg5	92	78.588	ENSSBOG00000033339	SMG5	99	60.142	Saimiri_boliviensis_boliviensis
ENSONIG00000008632	smg5	69	36.317	ENSSHAG00000000561	-	88	36.061	Sarcophilus_harrisii
ENSONIG00000008632	smg5	50	36.061	ENSSHAG00000000935	-	81	36.061	Sarcophilus_harrisii
ENSONIG00000008632	smg5	55	56.019	ENSSHAG00000014163	SMG5	100	59.821	Sarcophilus_harrisii
ENSONIG00000008632	smg5	76	38.843	ENSSHAG00000009572	-	87	38.636	Sarcophilus_harrisii
ENSONIG00000008632	smg5	100	77.650	ENSSFOG00015024175	smg5	100	76.726	Scleropages_formosus
ENSONIG00000008632	smg5	100	89.076	ENSSMAG00000013059	smg5	100	89.086	Scophthalmus_maximus
ENSONIG00000008632	smg5	100	90.821	ENSSDUG00000007122	smg5	100	90.821	Seriola_dumerili
ENSONIG00000008632	smg5	100	90.788	ENSSLDG00000011418	smg5	100	90.345	Seriola_lalandi_dorsalis
ENSONIG00000008632	smg5	63	70.144	ENSSARG00000012484	SMG5	94	70.144	Sorex_araneus
ENSONIG00000008632	smg5	94	61.830	ENSSPUG00000002260	SMG5	100	61.317	Sphenodon_punctatus
ENSONIG00000008632	smg5	100	91.947	ENSSPAG00000014266	smg5	100	91.593	Stegastes_partitus
ENSONIG00000008632	smg5	99	47.467	ENSSSCG00000039308	-	92	54.110	Sus_scrofa
ENSONIG00000008632	smg5	99	57.993	ENSSSCG00000006490	-	100	59.381	Sus_scrofa
ENSONIG00000008632	smg5	99	64.324	ENSTGUG00000003748	-	99	62.378	Taeniopygia_guttata
ENSONIG00000008632	smg5	100	80.141	ENSTRUG00000012580	smg5	100	79.700	Takifugu_rubripes
ENSONIG00000008632	smg5	100	80.211	ENSTNIG00000010303	smg5	100	79.683	Tetraodon_nigroviridis
ENSONIG00000008632	smg5	52	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSONIG00000008632	smg5	99	57.194	ENSTTRG00000001401	SMG5	99	56.510	Tursiops_truncatus
ENSONIG00000008632	smg5	92	76.905	ENSUAMG00000013721	SMG5	99	59.556	Ursus_americanus
ENSONIG00000008632	smg5	91	75.062	ENSUMAG00000018041	SMG5	95	72.727	Ursus_maritimus
ENSONIG00000008632	smg5	92	71.287	ENSVPAG00000009446	SMG5	99	52.846	Vicugna_pacos
ENSONIG00000008632	smg5	99	59.893	ENSVVUG00000005887	SMG5	99	59.947	Vulpes_vulpes
ENSONIG00000008632	smg5	79	55.457	ENSXETG00000033791	SMG5	99	53.786	Xenopus_tropicalis
ENSONIG00000008632	smg5	92	92.973	ENSXCOG00000004379	smg5	100	92.973	Xiphophorus_couchianus
ENSONIG00000008632	smg5	100	86.489	ENSXMAG00000013499	smg5	100	86.489	Xiphophorus_maculatus