EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000009036 (Gene tree)
Gene ID: 100709977
Gene Symbol: smarcal1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 10315 bases
Position: chrGL831187.1:3481988-3492302
Accession: 100709977
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000011365	ResIII	PF04851.15	8.4e-07	1	1
ENSONIP00000011364	ResIII	PF04851.15	1.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000011374	-	2013	-	ENSONIP00000011365	671 (aa)	-	I3JR71
ENSONIT00000011373	-	2703	XM_005453042	ENSONIP00000011364	900 (aa)	XP_005453099	I3JR70

Gene Model

Click here to download ENSONIG00000009036's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000009036's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000009036	smarcal1	64	45.254	ENSONIG00000012025	zranb3	84	43.529

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000009036	smarcal1	100	63.368	ENSG00000138375	SMARCAL1	99	68.323	Homo_sapiens
ENSONIG00000009036	smarcal1	100	89.181	ENSAPOG00000020156	SMARCAL1	99	81.949	Acanthochromis_polyacanthus
ENSONIG00000009036	smarcal1	95	92.154	ENSACIG00000001500	smarcal1	97	87.752	Amphilophus_citrinellus
ENSONIG00000009036	smarcal1	100	89.134	ENSAOCG00000014266	SMARCAL1	100	81.264	Amphiprion_ocellaris
ENSONIG00000009036	smarcal1	100	89.035	ENSAPEG00000015861	SMARCAL1	98	86.017	Amphiprion_percula
ENSONIG00000009036	smarcal1	100	88.596	ENSATEG00000020624	SMARCAL1	99	79.341	Anabas_testudineus
ENSONIG00000009036	smarcal1	97	65.569	ENSAPLG00000009864	SMARCAL1	75	63.388	Anas_platyrhynchos
ENSONIG00000009036	smarcal1	100	65.066	ENSACAG00000004612	SMARCAL1	71	65.199	Anolis_carolinensis
ENSONIG00000009036	smarcal1	100	97.333	ENSACLG00000015990	SMARCAL1	100	97.333	Astatotilapia_calliptera
ENSONIG00000009036	smarcal1	100	77.047	ENSAMXG00000003350	smarcal1	96	68.018	Astyanax_mexicanus
ENSONIG00000009036	smarcal1	99	66.862	ENSCPBG00000013599	SMARCAL1	71	66.810	Chrysemys_picta_bellii
ENSONIG00000009036	smarcal1	93	49.048	ENSCING00000009308	-	100	49.048	Ciona_intestinalis
ENSONIG00000009036	smarcal1	100	81.752	ENSCSEG00000010785	SMARCAL1	99	72.910	Cynoglossus_semilaevis
ENSONIG00000009036	smarcal1	100	83.187	ENSCVAG00000018780	SMARCAL1	97	75.141	Cyprinodon_variegatus
ENSONIG00000009036	smarcal1	76	54.876	ENSEBUG00000011906	SMARCAL1	99	46.019	Eptatretus_burgeri
ENSONIG00000009036	smarcal1	100	76.676	ENSELUG00000010440	-	72	76.676	Esox_lucius
ENSONIG00000009036	smarcal1	99	64.809	ENSFALG00000003981	SMARCAL1	71	65.262	Ficedula_albicollis
ENSONIG00000009036	smarcal1	100	82.602	ENSFHEG00000008380	SMARCAL1	99	74.806	Fundulus_heteroclitus
ENSONIG00000009036	smarcal1	72	76.019	ENSGMOG00000010034	smarcal1	87	75.414	Gadus_morhua
ENSONIG00000009036	smarcal1	99	64.758	ENSGALG00000011475	RPL37A	75	63.019	Gallus_gallus
ENSONIG00000009036	smarcal1	91	85.661	ENSGACG00000006073	SMARCAL1	100	86.034	Gasterosteus_aculeatus
ENSONIG00000009036	smarcal1	95	67.488	ENSGAGG00000015660	SMARCAL1	71	68.092	Gopherus_agassizii
ENSONIG00000009036	smarcal1	100	96.778	ENSHBUG00000002973	smarcal1	100	96.778	Haplochromis_burtoni
ENSONIG00000009036	smarcal1	98	80.867	ENSHCOG00000017921	smarcal1	98	71.544	Hippocampus_comes
ENSONIG00000009036	smarcal1	100	83.480	ENSKMAG00000012023	SMARCAL1	99	75.737	Kryptolebias_marmoratus
ENSONIG00000009036	smarcal1	96	84.323	ENSLBEG00000022915	smarcal1	100	82.585	Labrus_bergylta
ENSONIG00000009036	smarcal1	92	86.825	ENSLBEG00000003493	smarcal1	100	78.337	Labrus_bergylta
ENSONIG00000009036	smarcal1	99	62.115	ENSLACG00000010974	SMARCAL1	98	51.895	Latimeria_chalumnae
ENSONIG00000009036	smarcal1	95	75.655	ENSLOCG00000009637	smarcal1	99	64.947	Lepisosteus_oculatus
ENSONIG00000009036	smarcal1	100	87.719	ENSMAMG00000000828	SMARCAL1	99	79.237	Mastacembelus_armatus
ENSONIG00000009036	smarcal1	100	97.222	ENSMZEG00005007660	SMARCAL1	100	97.222	Maylandia_zebra
ENSONIG00000009036	smarcal1	99	65.345	ENSMGAG00000011658	SMARCAL1	96	55.373	Meleagris_gallopavo
ENSONIG00000009036	smarcal1	95	80.769	ENSMMOG00000003842	smarcal1	94	76.197	Mola_mola
ENSONIG00000009036	smarcal1	99	62.391	ENSMODG00000015544	SMARCAL1	71	62.391	Monodelphis_domestica
ENSONIG00000009036	smarcal1	95	96.154	ENSNBRG00000016273	smarcal1	97	95.238	Neolamprologus_brichardi
ENSONIG00000009036	smarcal1	93	65.605	ENSMEUG00000004395	SMARCAL1	100	51.758	Notamacropus_eugenii
ENSONIG00000009036	smarcal1	100	82.558	ENSORLG00000016455	SMARCAL1	99	73.000	Oryzias_latipes
ENSONIG00000009036	smarcal1	100	82.267	ENSORLG00020001610	SMARCAL1	99	73.444	Oryzias_latipes_hni
ENSONIG00000009036	smarcal1	100	82.703	ENSORLG00015001865	SMARCAL1	99	73.556	Oryzias_latipes_hsok
ENSONIG00000009036	smarcal1	100	83.285	ENSOMEG00000001845	smarcal1	98	74.525	Oryzias_melastigma
ENSONIG00000009036	smarcal1	100	82.370	ENSPMGG00000019092	SMARCAL1	98	73.918	Periophthalmus_magnuspinnatus
ENSONIG00000009036	smarcal1	100	62.044	ENSPCIG00000022514	SMARCAL1	72	62.866	Phascolarctos_cinereus
ENSONIG00000009036	smarcal1	100	83.552	ENSPFOG00000000560	SMARCAL1	99	76.438	Poecilia_formosa
ENSONIG00000009036	smarcal1	100	84.134	ENSPMEG00000018146	SMARCAL1	99	76.438	Poecilia_mexicana
ENSONIG00000009036	smarcal1	64	86.574	ENSPREG00000009591	SMARCAL1	97	86.574	Poecilia_reticulata
ENSONIG00000009036	smarcal1	100	77.339	ENSPNAG00000014900	smarcal1	91	68.063	Pygocentrus_nattereri
ENSONIG00000009036	smarcal1	100	59.448	ENSSHAG00000013538	SMARCAL1	98	50.756	Sarcophilus_harrisii
ENSONIG00000009036	smarcal1	100	86.735	ENSSMAG00000010427	SMARCAL1	98	79.121	Scophthalmus_maximus
ENSONIG00000009036	smarcal1	100	88.596	ENSSDUG00000017470	SMARCAL1	95	82.662	Seriola_dumerili
ENSONIG00000009036	smarcal1	100	88.158	ENSSLDG00000007224	SMARCAL1	99	81.510	Seriola_lalandi_dorsalis
ENSONIG00000009036	smarcal1	99	67.007	ENSSPUG00000015369	SMARCAL1	69	67.728	Sphenodon_punctatus
ENSONIG00000009036	smarcal1	95	89.077	ENSSPAG00000003742	smarcal1	99	78.225	Stegastes_partitus
ENSONIG00000009036	smarcal1	99	60.709	ENSSSCG00000035501	SMARCAL1	89	52.443	Sus_scrofa
ENSONIG00000009036	smarcal1	99	65.269	ENSTGUG00000005079	SMARCAL1	99	65.269	Taeniopygia_guttata
ENSONIG00000009036	smarcal1	100	72.901	ENSTRUG00000010701	SMARCAL1	100	63.385	Takifugu_rubripes
ENSONIG00000009036	smarcal1	100	53.226	ENSTTRG00000009001	SMARCAL1	96	44.802	Tursiops_truncatus
ENSONIG00000009036	smarcal1	99	68.860	ENSXETG00000000465	smarcal1	97	58.306	Xenopus_tropicalis