EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000009231 (Gene tree)
Gene ID: 100709712
Gene Symbol: polr2a
Alias: -
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 12877 bases
Position: chrGL831208.1:106748-119624
Accession: 100709712
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000011611	RNA_pol_Rpb1_5	PF04998.17	2e-101	1	1
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	1	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	2	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	3	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	4	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	5	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	6	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	7	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	8	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	9	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	10	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	11	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	12	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	13	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	14	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	15	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	16	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	17	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	18	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	19	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	20	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	21	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	22	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	23	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	24	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	25	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	26	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	27	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	28	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	29	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	30	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	31	32
ENSONIP00000011611	RNA_pol_Rpb1_R	PF05001.13	8.1e-24	32	32
ENSONIP00000011611	RNA_pol_Rpb1_4	PF05000.17	9.9e-38	1	1
ENSONIP00000011611	RNA_pol_Rpb1_2	PF00623.20	5e-75	1	1
ENSONIP00000011611	RNA_pol_Rpb1_3	PF04983.18	2.4e-50	1	1
ENSONIP00000011611	RNA_pol_Rpb1_1	PF04997.12	4.2e-109	1	1
ENSONIP00000011611	RNA_pol_Rpb1_7	PF04990.12	1.5e-55	1	1
ENSONIP00000011611	RNA_pol_Rpb1_6	PF04992.14	9.6e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000011620	-	8772	XM_003449332	ENSONIP00000011611	1966 (aa)	XP_003449380	I3JRW6

Gene Model

Click here to download ENSONIG00000009231's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000009231's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000009231	polr2a	66	38.184	ENSONIG00000016129	polr3a	91	37.707

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000009231	polr2a	87	98.821	ENSAPOG00000006552	polr2a	90	98.821	Acanthochromis_polyacanthus
ENSONIG00000009231	polr2a	82	94.052	ENSAMEG00000016265	-	82	94.059	Ailuropoda_melanoleuca
ENSONIG00000009231	polr2a	100	96.897	ENSACIG00000015982	polr2a	100	97.406	Amphilophus_citrinellus
ENSONIG00000009231	polr2a	95	96.464	ENSAOCG00000004255	polr2a	93	96.464	Amphiprion_ocellaris
ENSONIG00000009231	polr2a	100	99.084	ENSAPEG00000012623	polr2a	100	99.084	Amphiprion_percula
ENSONIG00000009231	polr2a	100	98.983	ENSATEG00000019644	polr2a	100	98.983	Anabas_testudineus
ENSONIG00000009231	polr2a	82	94.658	ENSACAG00000014561	POLR2A	82	94.665	Anolis_carolinensis
ENSONIG00000009231	polr2a	82	94.413	ENSANAG00000020093	-	82	94.420	Aotus_nancymaae
ENSONIG00000009231	polr2a	100	99.644	ENSACLG00000006735	polr2a	100	99.644	Astatotilapia_calliptera
ENSONIG00000009231	polr2a	100	97.813	ENSAMXG00000020046	polr2a	100	97.813	Astyanax_mexicanus
ENSONIG00000009231	polr2a	82	94.413	ENSBTAG00000046765	POLR2A	82	94.420	Bos_taurus
ENSONIG00000009231	polr2a	98	71.429	WBGene00000123	ama-1	99	79.612	Caenorhabditis_elegans
ENSONIG00000009231	polr2a	86	94.351	ENSCAFG00000016532	POLR2A	99	94.358	Canis_familiaris
ENSONIG00000009231	polr2a	82	93.486	ENSCAFG00020007929	-	82	93.494	Canis_lupus_dingo
ENSONIG00000009231	polr2a	82	94.413	ENSCHIG00000027173	-	82	94.420	Capra_hircus
ENSONIG00000009231	polr2a	90	93.863	ENSTSYG00000012803	-	85	91.832	Carlito_syrichta
ENSONIG00000009231	polr2a	98	90.939	ENSCAPG00000001882	-	100	93.489	Cavia_aperea
ENSONIG00000009231	polr2a	99	88.822	ENSCPOG00000014812	-	100	93.242	Cavia_porcellus
ENSONIG00000009231	polr2a	82	94.413	ENSCCAG00000020938	-	82	94.420	Cebus_capucinus
ENSONIG00000009231	polr2a	82	94.351	ENSCATG00000013680	-	82	94.358	Cercocebus_atys
ENSONIG00000009231	polr2a	82	94.289	ENSCLAG00000012196	-	82	94.296	Chinchilla_lanigera
ENSONIG00000009231	polr2a	82	85.626	ENSCSAG00000011644	-	82	85.644	Chlorocebus_sabaeus
ENSONIG00000009231	polr2a	91	83.171	ENSCPBG00000012697	POLR2A	94	90.463	Chrysemys_picta_bellii
ENSONIG00000009231	polr2a	98	76.671	ENSCING00000007884	-	99	77.228	Ciona_intestinalis
ENSONIG00000009231	polr2a	98	73.724	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSONIG00000009231	polr2a	82	93.669	ENSCANG00000010622	-	82	93.676	Colobus_angolensis_palliatus
ENSONIG00000009231	polr2a	82	88.076	ENSCGRG00001003538	Polr2a	85	86.943	Cricetulus_griseus_chok1gshd
ENSONIG00000009231	polr2a	82	90.781	ENSCGRG00000012105	Polr2a	93	90.748	Cricetulus_griseus_crigri
ENSONIG00000009231	polr2a	99	97.710	ENSCSEG00000002635	polr2a	100	97.710	Cynoglossus_semilaevis
ENSONIG00000009231	polr2a	100	98.525	ENSCVAG00000005156	polr2a	100	98.525	Cyprinodon_variegatus
ENSONIG00000009231	polr2a	100	97.204	ENSDARG00000099966	polr2a	100	97.204	Danio_rerio
ENSONIG00000009231	polr2a	82	91.044	ENSDNOG00000016482	-	82	91.055	Dasypus_novemcinctus
ENSONIG00000009231	polr2a	82	94.413	ENSDORG00000008667	Polr2a	82	94.420	Dipodomys_ordii
ENSONIG00000009231	polr2a	99	70.306	FBgn0003277	RpII215	98	75.466	Drosophila_melanogaster
ENSONIG00000009231	polr2a	94	89.919	ENSETEG00000002540	-	87	91.010	Echinops_telfairi
ENSONIG00000009231	polr2a	82	87.461	ENSEBUG00000013967	polr2a	82	87.446	Eptatretus_burgeri
ENSONIG00000009231	polr2a	82	92.365	ENSEASG00005019114	-	83	92.374	Equus_asinus_asinus
ENSONIG00000009231	polr2a	82	94.413	ENSECAG00000018485	POLR2A	82	94.420	Equus_caballus
ENSONIG00000009231	polr2a	83	94.393	ENSEEUG00000001154	-	95	94.393	Erinaceus_europaeus
ENSONIG00000009231	polr2a	89	92.170	ENSELUG00000014284	polr2a	84	92.848	Esox_lucius
ENSONIG00000009231	polr2a	82	94.475	ENSFDAG00000008287	-	82	94.482	Fukomys_damarensis
ENSONIG00000009231	polr2a	99	97.965	ENSFHEG00000001768	polr2a	100	97.965	Fundulus_heteroclitus
ENSONIG00000009231	polr2a	99	92.711	ENSGMOG00000007725	polr2a	100	92.711	Gadus_morhua
ENSONIG00000009231	polr2a	99	100.000	ENSGAFG00000005389	polr2a	100	93.452	Gambusia_affinis
ENSONIG00000009231	polr2a	99	94.317	ENSGACG00000019366	polr2a	100	94.096	Gasterosteus_aculeatus
ENSONIG00000009231	polr2a	82	92.384	ENSGGOG00000014800	-	96	93.096	Gorilla_gorilla
ENSONIG00000009231	polr2a	99	99.633	ENSHBUG00000018937	polr2a	100	99.633	Haplochromis_burtoni
ENSONIG00000009231	polr2a	82	94.475	ENSHGLG00000012381	POLR2A	82	94.482	Heterocephalus_glaber_female
ENSONIG00000009231	polr2a	82	94.475	ENSHGLG00100014843	POLR2A	82	94.482	Heterocephalus_glaber_male
ENSONIG00000009231	polr2a	100	98.016	ENSHCOG00000011874	polr2a	100	98.016	Hippocampus_comes
ENSONIG00000009231	polr2a	100	97.457	ENSIPUG00000002613	Polr2a	100	97.457	Ictalurus_punctatus
ENSONIG00000009231	polr2a	82	94.413	ENSSTOG00000001304	-	82	94.420	Ictidomys_tridecemlineatus
ENSONIG00000009231	polr2a	82	94.413	ENSJJAG00000013049	Polr2a	82	94.420	Jaculus_jaculus
ENSONIG00000009231	polr2a	82	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSONIG00000009231	polr2a	99	98.473	ENSLBEG00000027652	polr2a	100	98.473	Labrus_bergylta
ENSONIG00000009231	polr2a	80	85.389	ENSLACG00000012071	POLR2A	81	85.461	Latimeria_chalumnae
ENSONIG00000009231	polr2a	89	96.723	ENSLOCG00000013863	polr2a	97	96.276	Lepisosteus_oculatus
ENSONIG00000009231	polr2a	99	91.166	ENSLAFG00000008626	-	97	94.420	Loxodonta_africana
ENSONIG00000009231	polr2a	50	93.258	ENSMFAG00000007042	-	99	93.258	Macaca_fascicularis
ENSONIG00000009231	polr2a	82	94.351	ENSMMUG00000023620	-	91	94.358	Macaca_mulatta
ENSONIG00000009231	polr2a	82	93.917	ENSMNEG00000040407	-	82	93.924	Macaca_nemestrina
ENSONIG00000009231	polr2a	80	89.937	ENSMLEG00000030263	-	99	93.258	Mandrillus_leucophaeus
ENSONIG00000009231	polr2a	100	98.627	ENSMAMG00000003351	polr2a	100	98.627	Mastacembelus_armatus
ENSONIG00000009231	polr2a	100	99.644	ENSMZEG00005021429	polr2a	100	99.644	Maylandia_zebra
ENSONIG00000009231	polr2a	50	94.495	ENSMAUG00000021055	-	99	94.495	Mesocricetus_auratus
ENSONIG00000009231	polr2a	82	94.351	ENSMICG00000013372	-	98	93.756	Microcebus_murinus
ENSONIG00000009231	polr2a	99	89.901	ENSMOCG00000018279	Polr2a	100	90.111	Microtus_ochrogaster
ENSONIG00000009231	polr2a	90	98.015	ENSMMOG00000012515	polr2a	92	98.015	Mola_mola
ENSONIG00000009231	polr2a	82	94.103	ENSMODG00000007009	-	82	94.110	Monodelphis_domestica
ENSONIG00000009231	polr2a	92	98.637	ENSMALG00000008716	polr2a	99	96.216	Monopterus_albus
ENSONIG00000009231	polr2a	82	94.413	MGP_CAROLIEiJ_G0016587	Polr2a	82	94.420	Mus_caroli
ENSONIG00000009231	polr2a	82	94.413	ENSMUSG00000005198	Polr2a	82	94.420	Mus_musculus
ENSONIG00000009231	polr2a	82	92.336	MGP_PahariEiJ_G0017718	Polr2a	82	92.346	Mus_pahari
ENSONIG00000009231	polr2a	82	94.413	MGP_SPRETEiJ_G0017423	Polr2a	82	94.420	Mus_spretus
ENSONIG00000009231	polr2a	82	94.413	ENSMPUG00000009648	-	82	94.420	Mustela_putorius_furo
ENSONIG00000009231	polr2a	82	93.924	ENSMLUG00000009088	-	82	93.932	Myotis_lucifugus
ENSONIG00000009231	polr2a	82	94.413	ENSNGAG00000002543	Polr2a	82	94.420	Nannospalax_galili
ENSONIG00000009231	polr2a	100	97.152	ENSNBRG00000002005	polr2a	100	97.711	Neolamprologus_brichardi
ENSONIG00000009231	polr2a	82	93.003	ENSNLEG00000009460	-	82	93.012	Nomascus_leucogenys
ENSONIG00000009231	polr2a	94	95.425	ENSMEUG00000008611	-	93	95.425	Notamacropus_eugenii
ENSONIG00000009231	polr2a	80	94.125	ENSOPRG00000015116	-	99	94.125	Ochotona_princeps
ENSONIG00000009231	polr2a	87	94.389	ENSODEG00000017674	-	85	90.012	Octodon_degus
ENSONIG00000009231	polr2a	99	90.345	ENSOCUG00000017929	-	100	94.296	Oryctolagus_cuniculus
ENSONIG00000009231	polr2a	100	98.423	ENSORLG00000006431	polr2a	100	98.423	Oryzias_latipes
ENSONIG00000009231	polr2a	100	98.423	ENSORLG00020010235	polr2a	100	98.423	Oryzias_latipes_hni
ENSONIG00000009231	polr2a	100	98.321	ENSORLG00015007075	polr2a	100	98.321	Oryzias_latipes_hsok
ENSONIG00000009231	polr2a	95	97.581	ENSOMEG00000010713	polr2a	100	98.009	Oryzias_melastigma
ENSONIG00000009231	polr2a	82	94.413	ENSOGAG00000033608	-	82	94.420	Otolemur_garnettii
ENSONIG00000009231	polr2a	89	94.413	ENSOARG00000013874	-	85	94.420	Ovis_aries
ENSONIG00000009231	polr2a	81	92.005	ENSPPAG00000043734	-	82	91.816	Pan_paniscus
ENSONIG00000009231	polr2a	82	93.003	ENSPTRG00000008691	POLR2A	82	93.012	Pan_troglodytes
ENSONIG00000009231	polr2a	82	93.669	ENSPANG00000024099	-	82	93.676	Papio_anubis
ENSONIG00000009231	polr2a	77	95.749	ENSPKIG00000005727	polr2a	85	95.749	Paramormyrops_kingsleyae
ENSONIG00000009231	polr2a	98	92.710	ENSPSIG00000014006	POLR2A	100	92.627	Pelodiscus_sinensis
ENSONIG00000009231	polr2a	100	97.628	ENSPMGG00000019734	polr2a	100	97.628	Periophthalmus_magnuspinnatus
ENSONIG00000009231	polr2a	82	94.413	ENSPEMG00000012521	Polr2a	82	94.420	Peromyscus_maniculatus_bairdii
ENSONIG00000009231	polr2a	86	94.107	ENSPCIG00000028851	-	82	94.107	Phascolarctos_cinereus
ENSONIG00000009231	polr2a	99	98.417	ENSPFOG00000007890	polr2a	99	98.417	Poecilia_formosa
ENSONIG00000009231	polr2a	99	98.417	ENSPLAG00000007399	polr2a	99	98.417	Poecilia_latipinna
ENSONIG00000009231	polr2a	99	98.417	ENSPMEG00000002071	polr2a	99	98.417	Poecilia_mexicana
ENSONIG00000009231	polr2a	100	98.423	ENSPREG00000013122	polr2a	100	98.423	Poecilia_reticulata
ENSONIG00000009231	polr2a	82	94.413	ENSPPYG00000007924	-	82	94.420	Pongo_abelii
ENSONIG00000009231	polr2a	74	95.526	ENSPCAG00000006951	-	74	95.526	Procavia_capensis
ENSONIG00000009231	polr2a	82	93.112	ENSPCOG00000025260	-	82	93.120	Propithecus_coquereli
ENSONIG00000009231	polr2a	82	94.103	ENSPVAG00000005069	-	82	94.110	Pteropus_vampyrus
ENSONIG00000009231	polr2a	100	99.593	ENSPNYG00000022340	polr2a	100	99.593	Pundamilia_nyererei
ENSONIG00000009231	polr2a	100	97.864	ENSPNAG00000011237	polr2a	100	97.864	Pygocentrus_nattereri
ENSONIG00000009231	polr2a	82	94.351	ENSRNOG00000028834	Polr2a	82	94.358	Rattus_norvegicus
ENSONIG00000009231	polr2a	82	94.041	ENSRBIG00000002471	-	91	94.048	Rhinopithecus_bieti
ENSONIG00000009231	polr2a	82	94.351	ENSRROG00000029583	-	89	93.552	Rhinopithecus_roxellana
ENSONIG00000009231	polr2a	82	50.276	YDL140C	RPO21	99	83.544	Saccharomyces_cerevisiae
ENSONIG00000009231	polr2a	82	94.413	ENSSBOG00000000808	-	82	94.420	Saimiri_boliviensis_boliviensis
ENSONIG00000009231	polr2a	93	94.103	ENSSHAG00000002858	-	84	94.110	Sarcophilus_harrisii
ENSONIG00000009231	polr2a	99	97.510	ENSSFOG00015023275	polr2a	100	97.510	Scleropages_formosus
ENSONIG00000009231	polr2a	82	97.829	ENSSMAG00000009137	polr2a	82	97.829	Scophthalmus_maximus
ENSONIG00000009231	polr2a	100	99.034	ENSSDUG00000020466	polr2a	100	99.034	Seriola_dumerili
ENSONIG00000009231	polr2a	100	98.983	ENSSLDG00000020613	polr2a	100	98.983	Seriola_lalandi_dorsalis
ENSONIG00000009231	polr2a	95	90.132	ENSSARG00000005875	-	99	90.954	Sorex_araneus
ENSONIG00000009231	polr2a	100	100.000	ENSSPAG00000016741	polr2a	95	100.000	Stegastes_partitus
ENSONIG00000009231	polr2a	82	93.482	ENSSSCG00000028278	-	82	93.490	Sus_scrofa
ENSONIG00000009231	polr2a	98	92.818	ENSTRUG00000012320	polr2a	81	92.818	Takifugu_rubripes
ENSONIG00000009231	polr2a	92	96.960	ENSTNIG00000010136	polr2a	100	96.960	Tetraodon_nigroviridis
ENSONIG00000009231	polr2a	74	94.898	ENSTBEG00000013294	-	58	94.898	Tupaia_belangeri
ENSONIG00000009231	polr2a	82	92.737	ENSTTRG00000014273	-	82	92.746	Tursiops_truncatus
ENSONIG00000009231	polr2a	92	93.994	ENSUAMG00000014866	-	100	91.528	Ursus_americanus
ENSONIG00000009231	polr2a	74	92.737	ENSUMAG00000015732	-	83	92.737	Ursus_maritimus
ENSONIG00000009231	polr2a	65	98.370	ENSVPAG00000008842	-	76	98.370	Vicugna_pacos
ENSONIG00000009231	polr2a	82	94.351	ENSVVUG00000027878	-	83	94.358	Vulpes_vulpes
ENSONIG00000009231	polr2a	81	93.958	ENSXETG00000012465	polr2a	82	93.966	Xenopus_tropicalis
ENSONIG00000009231	polr2a	90	95.946	ENSXCOG00000001804	polr2a	100	95.480	Xiphophorus_couchianus
ENSONIG00000009231	polr2a	100	98.423	ENSXMAG00000015687	polr2a	100	98.423	Xiphophorus_maculatus