EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000009292 (Gene tree)
Gene ID: -
Gene Symbol: chd3
Alias: -
Full Name: chromodomain-helicase-DNA-binding protein 3
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 55826 bases
Position: chrGL831208.1:2087717-2143542
Accession: 100698867
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000011685	ResIII	PF04851.15	2.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000011694	-	5757	-	ENSONIP00000011685	1919 (aa)	-	I3JS40
ENSONIT00000011693	-	8878	XM_019354193	ENSONIP00000011684	2078 (aa)	XP_019209738	I3JS39

Gene Model

Click here to download ENSONIG00000009292's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000009292's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000009292	chd3	96	65.972	ENSONIG00000012953	-	96	66.047
ENSONIG00000009292	chd3	96	65.707	ENSONIG00000006992	chd4a	94	66.288
ENSONIG00000009292	chd3	96	68.840	ENSONIG00000000619	chd5	94	68.753

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000009292	chd3	100	75.000	ENSG00000170004	CHD3	94	75.026	Homo_sapiens
ENSONIG00000009292	chd3	85	96.859	ENSAPOG00000005614	chd3	95	96.859	Acanthochromis_polyacanthus
ENSONIG00000009292	chd3	69	77.935	ENSAMEG00000003025	-	68	86.437	Ailuropoda_melanoleuca
ENSONIG00000009292	chd3	82	98.919	ENSACIG00000019671	chd3	99	98.919	Amphilophus_citrinellus
ENSONIG00000009292	chd3	99	90.418	ENSAOCG00000023784	chd3	98	95.481	Amphiprion_ocellaris
ENSONIG00000009292	chd3	99	90.367	ENSAPEG00000006341	chd3	94	91.094	Amphiprion_percula
ENSONIG00000009292	chd3	99	89.740	ENSATEG00000000848	chd3	95	94.764	Anabas_testudineus
ENSONIG00000009292	chd3	99	76.324	ENSACAG00000004276	CHD3	92	75.322	Anolis_carolinensis
ENSONIG00000009292	chd3	96	75.467	ENSANAG00000034323	CHD3	97	76.300	Aotus_nancymaae
ENSONIG00000009292	chd3	96	97.872	ENSACLG00000009222	chd3	98	94.291	Astatotilapia_calliptera
ENSONIG00000009292	chd3	100	75.090	ENSBTAG00000014377	CHD3	96	74.302	Bos_taurus
ENSONIG00000009292	chd3	100	74.948	ENSCJAG00000014766	CHD3	94	75.052	Callithrix_jacchus
ENSONIG00000009292	chd3	100	75.295	ENSCAFG00000016859	CHD3	95	74.676	Canis_familiaris
ENSONIG00000009292	chd3	96	76.729	ENSCAFG00020007422	CHD3	98	76.278	Canis_lupus_dingo
ENSONIG00000009292	chd3	100	75.128	ENSCHIG00000016737	CHD3	75	77.683	Capra_hircus
ENSONIG00000009292	chd3	100	74.794	ENSTSYG00000035658	CHD3	98	73.882	Carlito_syrichta
ENSONIG00000009292	chd3	100	71.582	ENSCAPG00000014864	CHD3	74	74.391	Cavia_aperea
ENSONIG00000009292	chd3	100	73.980	ENSCPOG00000022653	CHD3	74	77.485	Cavia_porcellus
ENSONIG00000009292	chd3	100	74.845	ENSCCAG00000034792	CHD3	94	74.857	Cebus_capucinus
ENSONIG00000009292	chd3	100	75.013	ENSCATG00000041717	CHD3	94	75.157	Cercocebus_atys
ENSONIG00000009292	chd3	100	74.948	ENSCLAG00000010523	CHD3	96	74.804	Chinchilla_lanigera
ENSONIG00000009292	chd3	100	75.026	ENSCSAG00000011122	CHD3	96	74.922	Chlorocebus_sabaeus
ENSONIG00000009292	chd3	89	80.095	ENSCPBG00000011966	CHD3	93	93.878	Chrysemys_picta_bellii
ENSONIG00000009292	chd3	100	74.845	ENSCANG00000037641	CHD3	98	73.939	Colobus_angolensis_palliatus
ENSONIG00000009292	chd3	100	74.513	ENSCGRG00001011306	Chd3	96	74.468	Cricetulus_griseus_chok1gshd
ENSONIG00000009292	chd3	92	91.096	ENSCSEG00000004489	chd3	98	91.096	Cynoglossus_semilaevis
ENSONIG00000009292	chd3	90	94.000	ENSCVAG00000007293	chd3	95	94.715	Cyprinodon_variegatus
ENSONIG00000009292	chd3	95	88.542	ENSDARG00000021405	chd3	97	88.542	Danio_rerio
ENSONIG00000009292	chd3	91	75.691	ENSDNOG00000047846	CHD3	87	75.122	Dasypus_novemcinctus
ENSONIG00000009292	chd3	100	74.808	ENSDORG00000010713	Chd3	77	77.749	Dipodomys_ordii
ENSONIG00000009292	chd3	100	70.292	ENSETEG00000017733	CHD3	77	72.332	Echinops_telfairi
ENSONIG00000009292	chd3	76	68.750	ENSEBUG00000008310	chd3	98	69.069	Eptatretus_burgeri
ENSONIG00000009292	chd3	94	76.780	ENSEASG00005019360	CHD3	98	76.287	Equus_asinus_asinus
ENSONIG00000009292	chd3	94	76.835	ENSECAG00000010051	CHD3	98	76.177	Equus_caballus
ENSONIG00000009292	chd3	92	68.575	ENSEEUG00000015205	CHD3	81	91.753	Erinaceus_europaeus
ENSONIG00000009292	chd3	80	96.599	ENSELUG00000019499	chd3	99	96.599	Esox_lucius
ENSONIG00000009292	chd3	100	74.795	ENSFCAG00000009629	CHD3	92	74.728	Felis_catus
ENSONIG00000009292	chd3	96	76.165	ENSFDAG00000008220	CHD3	72	79.384	Fukomys_damarensis
ENSONIG00000009292	chd3	89	86.382	ENSGMOG00000013599	chd3	90	86.789	Gadus_morhua
ENSONIG00000009292	chd3	61	87.861	ENSGAFG00000004055	chd3	99	89.492	Gambusia_affinis
ENSONIG00000009292	chd3	99	83.273	ENSGACG00000019275	chd3	97	81.326	Gasterosteus_aculeatus
ENSONIG00000009292	chd3	77	76.944	ENSGAGG00000013164	CHD3	93	82.043	Gopherus_agassizii
ENSONIG00000009292	chd3	100	74.845	ENSGGOG00000013496	CHD3	98	73.420	Gorilla_gorilla
ENSONIG00000009292	chd3	100	74.808	ENSHGLG00000012017	CHD3	75	77.617	Heterocephalus_glaber_female
ENSONIG00000009292	chd3	89	66.972	ENSHGLG00100013902	CHD3	91	84.436	Heterocephalus_glaber_male
ENSONIG00000009292	chd3	98	84.463	ENSHCOG00000010170	chd3	95	85.573	Hippocampus_comes
ENSONIG00000009292	chd3	89	84.247	ENSIPUG00000003271	chd3	95	83.753	Ictalurus_punctatus
ENSONIG00000009292	chd3	100	74.897	ENSSTOG00000025907	CHD3	92	80.612	Ictidomys_tridecemlineatus
ENSONIG00000009292	chd3	100	75.115	ENSJJAG00000017633	Chd3	77	77.946	Jaculus_jaculus
ENSONIG00000009292	chd3	88	98.020	ENSKMAG00000019292	chd3	93	98.000	Kryptolebias_marmoratus
ENSONIG00000009292	chd3	94	94.094	ENSLBEG00000028485	chd3	91	95.935	Labrus_bergylta
ENSONIG00000009292	chd3	78	74.243	ENSLACG00000008031	CHD3	96	71.320	Latimeria_chalumnae
ENSONIG00000009292	chd3	99	79.641	ENSLOCG00000013965	chd3	94	76.990	Lepisosteus_oculatus
ENSONIG00000009292	chd3	94	78.742	ENSLAFG00000000572	CHD3	89	84.082	Loxodonta_africana
ENSONIG00000009292	chd3	100	75.013	ENSMFAG00000020113	CHD3	98	74.561	Macaca_fascicularis
ENSONIG00000009292	chd3	100	73.108	ENSMMUG00000022221	CHD3	94	72.675	Macaca_mulatta
ENSONIG00000009292	chd3	100	75.013	ENSMNEG00000001728	CHD3	98	75.713	Macaca_nemestrina
ENSONIG00000009292	chd3	100	75.013	ENSMLEG00000032249	CHD3	94	75.157	Mandrillus_leucophaeus
ENSONIG00000009292	chd3	82	96.392	ENSMAMG00000000564	chd3	95	96.392	Mastacembelus_armatus
ENSONIG00000009292	chd3	100	74.343	ENSMAUG00000013873	Chd3	98	73.799	Mesocricetus_auratus
ENSONIG00000009292	chd3	100	75.115	ENSMICG00000008741	CHD3	73	78.092	Microcebus_murinus
ENSONIG00000009292	chd3	100	74.395	ENSMOCG00000004848	Chd3	96	74.400	Microtus_ochrogaster
ENSONIG00000009292	chd3	98	86.800	ENSMMOG00000012699	chd3	99	86.098	Mola_mola
ENSONIG00000009292	chd3	94	76.146	ENSMODG00000007509	CHD3	98	76.367	Monodelphis_domestica
ENSONIG00000009292	chd3	100	75.013	MGP_CAROLIEiJ_G0016564	Chd3	99	74.296	Mus_caroli
ENSONIG00000009292	chd3	100	75.000	ENSMUSG00000018474	Chd3	98	74.478	Mus_musculus
ENSONIG00000009292	chd3	100	74.667	MGP_PahariEiJ_G0017695	Chd3	99	74.726	Mus_pahari
ENSONIG00000009292	chd3	100	75.051	MGP_SPRETEiJ_G0017400	Chd3	99	74.530	Mus_spretus
ENSONIG00000009292	chd3	88	76.636	ENSMPUG00000008861	CHD3	74	80.989	Mustela_putorius_furo
ENSONIG00000009292	chd3	100	74.616	ENSMLUG00000014643	-	95	74.120	Myotis_lucifugus
ENSONIG00000009292	chd3	100	75.115	ENSNGAG00000000773	Chd3	94	74.714	Nannospalax_galili
ENSONIG00000009292	chd3	90	90.570	ENSNBRG00000000636	chd3	98	90.687	Neolamprologus_brichardi
ENSONIG00000009292	chd3	100	73.502	ENSNLEG00000009770	CHD3	78	76.234	Nomascus_leucogenys
ENSONIG00000009292	chd3	84	79.730	ENSMEUG00000005852	CHD3	84	79.730	Notamacropus_eugenii
ENSONIG00000009292	chd3	96	75.979	ENSOPRG00000011069	CHD3	77	78.738	Ochotona_princeps
ENSONIG00000009292	chd3	100	74.795	ENSODEG00000017785	CHD3	75	77.683	Octodon_degus
ENSONIG00000009292	chd3	100	71.042	ENSOCUG00000029299	CHD3	76	76.115	Oryctolagus_cuniculus
ENSONIG00000009292	chd3	85	83.628	ENSORLG00000007107	chd3	93	83.384	Oryzias_latipes
ENSONIG00000009292	chd3	59	87.975	ENSORLG00020008387	chd3	95	88.506	Oryzias_latipes_hni
ENSONIG00000009292	chd3	73	94.218	ENSOMEG00000013691	chd3	99	89.730	Oryzias_melastigma
ENSONIG00000009292	chd3	100	74.681	ENSOGAG00000003216	CHD3	76	78.026	Otolemur_garnettii
ENSONIG00000009292	chd3	100	74.109	ENSOARG00000017855	CHD3	95	73.476	Ovis_aries
ENSONIG00000009292	chd3	100	73.286	ENSPPAG00000032886	CHD3	98	73.247	Pan_paniscus
ENSONIG00000009292	chd3	100	75.052	ENSPPRG00000000626	CHD3	95	74.393	Panthera_pardus
ENSONIG00000009292	chd3	100	75.000	ENSPTRG00000008714	CHD3	98	73.701	Pan_troglodytes
ENSONIG00000009292	chd3	100	75.013	ENSPANG00000023938	CHD3	98	74.561	Papio_anubis
ENSONIG00000009292	chd3	99	83.419	ENSPKIG00000006305	chd3	98	84.320	Paramormyrops_kingsleyae
ENSONIG00000009292	chd3	57	80.543	ENSPSIG00000010177	CHD3	97	81.108	Pelodiscus_sinensis
ENSONIG00000009292	chd3	100	74.628	ENSPEMG00000014262	Chd3	95	74.585	Peromyscus_maniculatus_bairdii
ENSONIG00000009292	chd3	100	74.884	ENSPCIG00000005442	CHD3	96	84.490	Phascolarctos_cinereus
ENSONIG00000009292	chd3	99	87.980	ENSPFOG00000012464	chd3	91	88.313	Poecilia_formosa
ENSONIG00000009292	chd3	90	97.154	ENSPLAG00000002887	chd3	94	97.131	Poecilia_latipinna
ENSONIG00000009292	chd3	55	90.023	ENSPMEG00000016725	chd3	93	87.478	Poecilia_mexicana
ENSONIG00000009292	chd3	95	97.112	ENSPREG00000011044	chd3	97	95.517	Poecilia_reticulata
ENSONIG00000009292	chd3	99	72.624	ENSPPYG00000007940	CHD3	96	72.633	Pongo_abelii
ENSONIG00000009292	chd3	96	79.416	ENSPCAG00000004350	CHD3	93	78.779	Procavia_capensis
ENSONIG00000009292	chd3	100	75.206	ENSPCOG00000020952	CHD3	95	74.974	Propithecus_coquereli
ENSONIG00000009292	chd3	82	75.051	ENSPVAG00000016344	CHD3	64	79.461	Pteropus_vampyrus
ENSONIG00000009292	chd3	99	82.954	ENSPNAG00000020393	chd3	98	92.933	Pygocentrus_nattereri
ENSONIG00000009292	chd3	94	76.274	ENSRNOG00000009722	Chd3	98	75.562	Rattus_norvegicus
ENSONIG00000009292	chd3	100	73.218	ENSRBIG00000033562	CHD3	98	74.443	Rhinopithecus_bieti
ENSONIG00000009292	chd3	100	74.845	ENSRROG00000029554	CHD3	98	75.258	Rhinopithecus_roxellana
ENSONIG00000009292	chd3	100	75.000	ENSSBOG00000020719	CHD3	98	75.452	Saimiri_boliviensis_boliviensis
ENSONIG00000009292	chd3	100	74.974	ENSSHAG00000014412	CHD3	97	74.935	Sarcophilus_harrisii
ENSONIG00000009292	chd3	90	83.063	ENSSFOG00015023123	chd3	95	83.797	Scleropages_formosus
ENSONIG00000009292	chd3	94	88.907	ENSSMAG00000006451	chd3	98	90.331	Scophthalmus_maximus
ENSONIG00000009292	chd3	57	89.416	ENSSDUG00000005792	chd3	96	89.416	Seriola_dumerili
ENSONIG00000009292	chd3	99	91.908	ENSSPAG00000013694	chd3	98	97.382	Stegastes_partitus
ENSONIG00000009292	chd3	100	75.026	ENSSSCG00000021363	CHD3	99	76.072	Sus_scrofa
ENSONIG00000009292	chd3	83	86.109	ENSTRUG00000014990	chd3	94	88.232	Takifugu_rubripes
ENSONIG00000009292	chd3	98	86.957	ENSTNIG00000012998	chd3	97	86.822	Tetraodon_nigroviridis
ENSONIG00000009292	chd3	63	86.408	ENSTBEG00000011454	-	69	91.753	Tupaia_belangeri
ENSONIG00000009292	chd3	96	79.030	ENSTTRG00000010295	CHD3	73	82.860	Tursiops_truncatus
ENSONIG00000009292	chd3	89	84.322	ENSUAMG00000005475	CHD3	95	84.322	Ursus_americanus
ENSONIG00000009292	chd3	55	91.304	ENSVPAG00000010794	-	59	96.078	Vicugna_pacos
ENSONIG00000009292	chd3	98	75.182	ENSVVUG00000028011	CHD3	96	75.964	Vulpes_vulpes
ENSONIG00000009292	chd3	99	68.685	ENSXETG00000012991	chd3	90	69.486	Xenopus_tropicalis
ENSONIG00000009292	chd3	57	90.066	ENSXCOG00000000809	chd3	95	91.391	Xiphophorus_couchianus
ENSONIG00000009292	chd3	82	96.196	ENSXMAG00000016035	chd3	99	92.391	Xiphophorus_maculatus