EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000009309 (Gene tree)
Gene ID: -
Gene Symbol: csde1
Alias: -
Full Name: cold shock domain containing E1%2C RNA-binding
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 12393 bases
Position: chrGL831205.1:3125265-3137657
Accession: ZDB-GENE-030131-8623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000011705	CSD	PF00313.22	6.7e-83	1	5
ENSONIP00000011705	CSD	PF00313.22	6.7e-83	2	5
ENSONIP00000011705	CSD	PF00313.22	6.7e-83	3	5
ENSONIP00000011705	CSD	PF00313.22	6.7e-83	4	5
ENSONIP00000011705	CSD	PF00313.22	6.7e-83	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000011714	-	5339	-	ENSONIP00000011705	817 (aa)	-	I3JS60

Gene Model

Click here to download ENSONIG00000009309's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000009309's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000009309	csde1	99	76.577	ENSG00000009307	CSDE1	97	86.364	Homo_sapiens
ENSONIG00000009309	csde1	100	93.880	ENSAPOG00000015538	csde1	100	93.423	Acanthochromis_polyacanthus
ENSONIG00000009309	csde1	100	72.093	ENSAMEG00000017129	CSDE1	94	72.093	Ailuropoda_melanoleuca
ENSONIG00000009309	csde1	90	95.676	ENSACIG00000015175	csde1	100	95.676	Amphilophus_citrinellus
ENSONIG00000009309	csde1	100	93.635	ENSAOCG00000011510	csde1	100	87.760	Amphiprion_ocellaris
ENSONIG00000009309	csde1	100	93.758	ENSAPEG00000007194	csde1	100	93.758	Amphiprion_percula
ENSONIG00000009309	csde1	100	87.271	ENSATEG00000003864	csde1	100	87.271	Anabas_testudineus
ENSONIG00000009309	csde1	100	74.786	ENSAPLG00000008797	CSDE1	100	74.786	Anas_platyrhynchos
ENSONIG00000009309	csde1	100	77.289	ENSACAG00000003120	CSDE1	100	77.289	Anolis_carolinensis
ENSONIG00000009309	csde1	100	74.969	ENSANAG00000024665	CSDE1	94	78.007	Aotus_nancymaae
ENSONIG00000009309	csde1	77	62.500	ENSANAG00000028396	-	93	62.500	Aotus_nancymaae
ENSONIG00000009309	csde1	100	97.430	ENSACLG00000013296	csde1	100	97.430	Astatotilapia_calliptera
ENSONIG00000009309	csde1	100	80.098	ENSAMXG00000007436	csde1	100	79.609	Astyanax_mexicanus
ENSONIG00000009309	csde1	100	74.969	ENSBTAG00000000678	CSDE1	100	72.583	Bos_taurus
ENSONIG00000009309	csde1	100	75.092	ENSCJAG00000012565	CSDE1	95	75.092	Callithrix_jacchus
ENSONIG00000009309	csde1	98	73.159	ENSCAFG00000009618	CSDE1	94	73.159	Canis_familiaris
ENSONIG00000009309	csde1	100	73.072	ENSCAFG00020000481	CSDE1	100	73.072	Canis_lupus_dingo
ENSONIG00000009309	csde1	100	74.969	ENSCHIG00000017250	CSDE1	100	72.583	Capra_hircus
ENSONIG00000009309	csde1	100	75.214	ENSTSYG00000003747	CSDE1	100	75.214	Carlito_syrichta
ENSONIG00000009309	csde1	100	68.681	ENSCAPG00000015128	CSDE1	100	68.681	Cavia_aperea
ENSONIG00000009309	csde1	100	71.726	ENSCPOG00000040388	CSDE1	100	71.726	Cavia_porcellus
ENSONIG00000009309	csde1	100	75.092	ENSCCAG00000036794	CSDE1	100	75.092	Cebus_capucinus
ENSONIG00000009309	csde1	97	55.111	ENSCCAG00000030878	-	91	54.889	Cebus_capucinus
ENSONIG00000009309	csde1	95	56.790	ENSCCAG00000033677	-	99	55.924	Cebus_capucinus
ENSONIG00000009309	csde1	100	75.214	ENSCATG00000036962	CSDE1	99	72.827	Cercocebus_atys
ENSONIG00000009309	csde1	100	75.336	ENSCLAG00000006618	CSDE1	100	75.336	Chinchilla_lanigera
ENSONIG00000009309	csde1	100	75.214	ENSCSAG00000001658	CSDE1	95	75.214	Chlorocebus_sabaeus
ENSONIG00000009309	csde1	100	82.524	ENSCHOG00000000918	CSDE1	85	82.524	Choloepus_hoffmanni
ENSONIG00000009309	csde1	100	77.289	ENSCPBG00000016547	CSDE1	100	77.289	Chrysemys_picta_bellii
ENSONIG00000009309	csde1	98	42.617	ENSCING00000014465	-	96	42.377	Ciona_intestinalis
ENSONIG00000009309	csde1	97	41.877	ENSCSAVG00000008100	-	100	40.709	Ciona_savignyi
ENSONIG00000009309	csde1	100	75.214	ENSCANG00000035096	CSDE1	99	72.827	Colobus_angolensis_palliatus
ENSONIG00000009309	csde1	90	79.699	ENSCANG00000031069	-	93	79.699	Colobus_angolensis_palliatus
ENSONIG00000009309	csde1	100	74.603	ENSCGRG00001016833	-	100	74.603	Cricetulus_griseus_chok1gshd
ENSONIG00000009309	csde1	100	59.364	ENSCGRG00001014011	-	100	59.364	Cricetulus_griseus_chok1gshd
ENSONIG00000009309	csde1	100	61.151	ENSCGRG00000005831	-	100	61.151	Cricetulus_griseus_crigri
ENSONIG00000009309	csde1	97	73.111	ENSCGRG00000002225	-	100	73.111	Cricetulus_griseus_crigri
ENSONIG00000009309	csde1	100	90.621	ENSCSEG00000002620	csde1	95	90.743	Cynoglossus_semilaevis
ENSONIG00000009309	csde1	100	89.474	ENSCVAG00000001344	csde1	100	89.038	Cyprinodon_variegatus
ENSONIG00000009309	csde1	100	85.452	ENSDARG00000074758	csde1	100	89.568	Danio_rerio
ENSONIG00000009309	csde1	100	73.227	ENSDNOG00000010287	-	93	73.227	Dasypus_novemcinctus
ENSONIG00000009309	csde1	99	76.276	ENSDORG00000011609	Csde1	99	76.276	Dipodomys_ordii
ENSONIG00000009309	csde1	97	47.835	FBgn0263352	Unr	80	47.217	Drosophila_melanogaster
ENSONIG00000009309	csde1	74	53.465	ENSETEG00000007109	-	99	53.465	Echinops_telfairi
ENSONIG00000009309	csde1	93	71.470	ENSETEG00000002491	-	82	71.470	Echinops_telfairi
ENSONIG00000009309	csde1	91	63.636	ENSETEG00000006280	-	100	63.636	Echinops_telfairi
ENSONIG00000009309	csde1	99	56.724	ENSETEG00000013678	-	99	56.618	Echinops_telfairi
ENSONIG00000009309	csde1	99	53.670	ENSEBUG00000008647	csde1	99	52.042	Eptatretus_burgeri
ENSONIG00000009309	csde1	100	75.580	ENSEASG00005006284	CSDE1	100	75.580	Equus_asinus_asinus
ENSONIG00000009309	csde1	100	75.580	ENSECAG00000020885	CSDE1	100	75.580	Equus_caballus
ENSONIG00000009309	csde1	93	73.298	ENSEEUG00000006286	CSDE1	68	73.298	Erinaceus_europaeus
ENSONIG00000009309	csde1	100	86.804	ENSELUG00000015507	csde1	95	86.199	Esox_lucius
ENSONIG00000009309	csde1	100	75.458	ENSFCAG00000029266	CSDE1	100	73.072	Felis_catus
ENSONIG00000009309	csde1	100	76.679	ENSFALG00000003407	CSDE1	100	76.679	Ficedula_albicollis
ENSONIG00000009309	csde1	99	76.126	ENSFDAG00000007882	CSDE1	99	76.126	Fukomys_damarensis
ENSONIG00000009309	csde1	100	89.474	ENSFHEG00000010799	csde1	100	89.474	Fundulus_heteroclitus
ENSONIG00000009309	csde1	99	86.291	ENSGMOG00000012731	csde1	100	86.291	Gadus_morhua
ENSONIG00000009309	csde1	98	77.114	ENSGALG00000002139	CSDE1	98	77.114	Gallus_gallus
ENSONIG00000009309	csde1	93	85.775	ENSGAFG00000005241	csde1	95	85.775	Gambusia_affinis
ENSONIG00000009309	csde1	99	89.828	ENSGACG00000004544	csde1	100	89.828	Gasterosteus_aculeatus
ENSONIG00000009309	csde1	100	77.167	ENSGAGG00000017685	CSDE1	100	77.167	Gopherus_agassizii
ENSONIG00000009309	csde1	100	75.214	ENSGGOG00000002164	CSDE1	100	72.827	Gorilla_gorilla
ENSONIG00000009309	csde1	100	99.755	ENSHBUG00000020315	csde1	100	98.549	Haplochromis_burtoni
ENSONIG00000009309	csde1	100	65.483	ENSHGLG00000003829	-	100	65.483	Heterocephalus_glaber_female
ENSONIG00000009309	csde1	99	60.880	ENSHGLG00000000650	-	99	60.880	Heterocephalus_glaber_female
ENSONIG00000009309	csde1	99	67.568	ENSHGLG00000008555	-	99	67.568	Heterocephalus_glaber_female
ENSONIG00000009309	csde1	100	68.620	ENSHGLG00000009620	-	100	68.987	Heterocephalus_glaber_female
ENSONIG00000009309	csde1	97	66.000	ENSHGLG00000010039	-	100	66.000	Heterocephalus_glaber_female
ENSONIG00000009309	csde1	99	63.995	ENSHGLG00000007471	-	98	63.995	Heterocephalus_glaber_female
ENSONIG00000009309	csde1	100	63.525	ENSHGLG00000019549	-	100	63.280	Heterocephalus_glaber_female
ENSONIG00000009309	csde1	99	62.762	ENSHGLG00100007287	-	98	62.762	Heterocephalus_glaber_male
ENSONIG00000009309	csde1	97	65.778	ENSHGLG00100006910	-	100	65.778	Heterocephalus_glaber_male
ENSONIG00000009309	csde1	100	74.969	ENSHGLG00100019438	-	100	74.969	Heterocephalus_glaber_male
ENSONIG00000009309	csde1	100	61.322	ENSHGLG00100012072	-	98	63.948	Heterocephalus_glaber_male
ENSONIG00000009309	csde1	99	64.024	ENSHGLG00100002245	-	99	64.024	Heterocephalus_glaber_male
ENSONIG00000009309	csde1	100	59.976	ENSHGLG00100001846	-	99	61.306	Heterocephalus_glaber_male
ENSONIG00000009309	csde1	97	60.444	ENSHGLG00100004833	-	100	60.444	Heterocephalus_glaber_male
ENSONIG00000009309	csde1	94	61.147	ENSHGLG00100004195	-	100	60.887	Heterocephalus_glaber_male
ENSONIG00000009309	csde1	100	88.739	ENSHCOG00000004158	csde1	100	85.435	Hippocampus_comes
ENSONIG00000009309	csde1	100	79.609	ENSIPUG00000000355	csde1	100	78.999	Ictalurus_punctatus
ENSONIG00000009309	csde1	90	59.626	ENSSTOG00000032722	-	98	63.315	Ictidomys_tridecemlineatus
ENSONIG00000009309	csde1	100	61.790	ENSSTOG00000030994	-	100	61.697	Ictidomys_tridecemlineatus
ENSONIG00000009309	csde1	99	76.276	ENSJJAG00000019571	Csde1	99	76.276	Jaculus_jaculus
ENSONIG00000009309	csde1	100	89.525	ENSKMAG00000005685	csde1	100	89.091	Kryptolebias_marmoratus
ENSONIG00000009309	csde1	100	92.778	ENSLBEG00000014770	csde1	95	92.778	Labrus_bergylta
ENSONIG00000009309	csde1	100	74.427	ENSLACG00000018452	CSDE1	94	74.427	Latimeria_chalumnae
ENSONIG00000009309	csde1	100	83.354	ENSLOCG00000010413	csde1	94	83.354	Lepisosteus_oculatus
ENSONIG00000009309	csde1	100	72.705	ENSLAFG00000007150	CSDE1	96	72.705	Loxodonta_africana
ENSONIG00000009309	csde1	100	75.214	ENSMFAG00000003674	CSDE1	100	72.827	Macaca_fascicularis
ENSONIG00000009309	csde1	100	75.214	ENSMMUG00000001974	CSDE1	100	72.827	Macaca_mulatta
ENSONIG00000009309	csde1	100	75.214	ENSMNEG00000045247	CSDE1	99	72.827	Macaca_nemestrina
ENSONIG00000009309	csde1	100	74.969	ENSMLEG00000038673	CSDE1	95	74.969	Mandrillus_leucophaeus
ENSONIG00000009309	csde1	100	93.635	ENSMAMG00000008821	csde1	95	93.635	Mastacembelus_armatus
ENSONIG00000009309	csde1	100	97.430	ENSMZEG00005021675	csde1	100	93.880	Maylandia_zebra
ENSONIG00000009309	csde1	98	77.239	ENSMGAG00000016381	CSDE1	98	77.239	Meleagris_gallopavo
ENSONIG00000009309	csde1	99	75.976	ENSMAUG00000014031	Csde1	99	75.976	Mesocricetus_auratus
ENSONIG00000009309	csde1	100	75.214	ENSMICG00000002050	CSDE1	99	74.165	Microcebus_murinus
ENSONIG00000009309	csde1	100	74.603	ENSMOCG00000018960	Csde1	100	74.603	Microtus_ochrogaster
ENSONIG00000009309	csde1	100	87.638	ENSMMOG00000015075	csde1	100	87.638	Mola_mola
ENSONIG00000009309	csde1	100	76.313	ENSMODG00000004685	CSDE1	100	76.313	Monodelphis_domestica
ENSONIG00000009309	csde1	100	87.638	ENSMALG00000007132	csde1	100	87.638	Monopterus_albus
ENSONIG00000009309	csde1	100	74.725	MGP_CAROLIEiJ_G0025444	Csde1	92	91.176	Mus_caroli
ENSONIG00000009309	csde1	99	76.126	ENSMUSG00000068823	Csde1	91	91.176	Mus_musculus
ENSONIG00000009309	csde1	100	74.725	MGP_PahariEiJ_G0026888	Csde1	92	91.176	Mus_pahari
ENSONIG00000009309	csde1	100	74.725	MGP_SPRETEiJ_G0026394	Csde1	92	91.176	Mus_spretus
ENSONIG00000009309	csde1	98	75.592	ENSMPUG00000005753	CSDE1	99	75.592	Mustela_putorius_furo
ENSONIG00000009309	csde1	100	72.583	ENSMLUG00000005681	CSDE1	94	72.583	Myotis_lucifugus
ENSONIG00000009309	csde1	99	75.826	ENSNGAG00000021929	Csde1	99	75.826	Nannospalax_galili
ENSONIG00000009309	csde1	82	52.000	ENSNGAG00000012599	-	100	52.000	Nannospalax_galili
ENSONIG00000009309	csde1	100	93.880	ENSNBRG00000020808	csde1	100	93.880	Neolamprologus_brichardi
ENSONIG00000009309	csde1	100	75.214	ENSNLEG00000004842	CSDE1	99	72.827	Nomascus_leucogenys
ENSONIG00000009309	csde1	98	84.466	ENSMEUG00000002677	CSDE1	95	84.466	Notamacropus_eugenii
ENSONIG00000009309	csde1	98	82.524	ENSOPRG00000005002	CSDE1	76	82.524	Ochotona_princeps
ENSONIG00000009309	csde1	99	76.126	ENSODEG00000007383	-	99	76.126	Octodon_degus
ENSONIG00000009309	csde1	97	52.097	ENSODEG00000005979	-	98	52.097	Octodon_degus
ENSONIG00000009309	csde1	100	81.356	ENSOANG00000003346	-	82	81.356	Ornithorhynchus_anatinus
ENSONIG00000009309	csde1	100	74.847	ENSOCUG00000016438	CSDE1	95	74.847	Oryctolagus_cuniculus
ENSONIG00000009309	csde1	100	91.799	ENSORLG00000000707	csde1	100	91.799	Oryzias_latipes
ENSONIG00000009309	csde1	100	91.799	ENSORLG00020005148	csde1	100	91.799	Oryzias_latipes_hni
ENSONIG00000009309	csde1	100	91.677	ENSORLG00015019415	csde1	100	91.677	Oryzias_latipes_hsok
ENSONIG00000009309	csde1	100	91.065	ENSOMEG00000015656	csde1	100	91.799	Oryzias_melastigma
ENSONIG00000009309	csde1	100	72.950	ENSOGAG00000012127	CSDE1	94	72.950	Otolemur_garnettii
ENSONIG00000009309	csde1	100	72.583	ENSOARG00000020034	CSDE1	94	72.583	Ovis_aries
ENSONIG00000009309	csde1	100	75.214	ENSPPAG00000025861	CSDE1	100	72.827	Pan_paniscus
ENSONIG00000009309	csde1	100	75.458	ENSPPRG00000006747	CSDE1	95	75.458	Panthera_pardus
ENSONIG00000009309	csde1	100	75.458	ENSPTIG00000015468	CSDE1	100	75.458	Panthera_tigris_altaica
ENSONIG00000009309	csde1	100	75.214	ENSPTRG00000033721	CSDE1	100	75.214	Pan_troglodytes
ENSONIG00000009309	csde1	100	75.214	ENSPANG00000018873	CSDE1	100	72.827	Papio_anubis
ENSONIG00000009309	csde1	100	79.682	ENSPKIG00000009459	csde1	100	79.682	Paramormyrops_kingsleyae
ENSONIG00000009309	csde1	96	78.390	ENSPSIG00000003823	CSDE1	96	77.754	Pelodiscus_sinensis
ENSONIG00000009309	csde1	100	84.963	ENSPMGG00000000772	csde1	100	84.963	Periophthalmus_magnuspinnatus
ENSONIG00000009309	csde1	99	76.126	ENSPEMG00000020357	-	99	76.126	Peromyscus_maniculatus_bairdii
ENSONIG00000009309	csde1	100	76.435	ENSPCIG00000022587	CSDE1	100	76.435	Phascolarctos_cinereus
ENSONIG00000009309	csde1	97	89.580	ENSPFOG00000012664	csde1	100	90.047	Poecilia_formosa
ENSONIG00000009309	csde1	95	84.793	ENSPLAG00000017680	csde1	93	84.793	Poecilia_latipinna
ENSONIG00000009309	csde1	95	85.100	ENSPMEG00000005094	csde1	95	85.100	Poecilia_mexicana
ENSONIG00000009309	csde1	100	90.361	ENSPREG00000011631	csde1	100	90.602	Poecilia_reticulata
ENSONIG00000009309	csde1	100	75.092	ENSPPYG00000000996	CSDE1	100	75.092	Pongo_abelii
ENSONIG00000009309	csde1	100	83.495	ENSPCAG00000014368	CSDE1	90	83.495	Procavia_capensis
ENSONIG00000009309	csde1	100	75.336	ENSPCOG00000017893	CSDE1	100	75.336	Propithecus_coquereli
ENSONIG00000009309	csde1	90	70.260	ENSPCOG00000008223	-	92	70.260	Propithecus_coquereli
ENSONIG00000009309	csde1	100	67.931	ENSPVAG00000008225	CSDE1	95	67.931	Pteropus_vampyrus
ENSONIG00000009309	csde1	100	98.549	ENSPNYG00000013745	csde1	100	98.549	Pundamilia_nyererei
ENSONIG00000009309	csde1	100	84.615	ENSPNAG00000001958	csde1	100	80.586	Pygocentrus_nattereri
ENSONIG00000009309	csde1	100	74.603	ENSRNOG00000061058	Csde1	100	74.603	Rattus_norvegicus
ENSONIG00000009309	csde1	99	73.534	ENSRBIG00000038088	-	99	73.534	Rhinopithecus_bieti
ENSONIG00000009309	csde1	100	70.574	ENSRBIG00000038966	-	94	70.560	Rhinopithecus_bieti
ENSONIG00000009309	csde1	100	75.214	ENSRROG00000043101	CSDE1	99	72.827	Rhinopithecus_roxellana
ENSONIG00000009309	csde1	100	75.092	ENSSBOG00000035592	CSDE1	95	75.092	Saimiri_boliviensis_boliviensis
ENSONIG00000009309	csde1	100	74.051	ENSSHAG00000009831	CSDE1	100	74.051	Sarcophilus_harrisii
ENSONIG00000009309	csde1	100	84.352	ENSSFOG00015007498	csde1	100	82.238	Scleropages_formosus
ENSONIG00000009309	csde1	100	92.787	ENSSMAG00000007203	csde1	100	92.534	Scophthalmus_maximus
ENSONIG00000009309	csde1	100	94.247	ENSSDUG00000015380	csde1	95	94.247	Seriola_dumerili
ENSONIG00000009309	csde1	100	91.922	ENSSLDG00000008819	csde1	100	91.922	Seriola_lalandi_dorsalis
ENSONIG00000009309	csde1	100	72.460	ENSSARG00000000738	CSDE1	94	72.460	Sorex_araneus
ENSONIG00000009309	csde1	100	77.411	ENSSPUG00000008714	CSDE1	100	77.411	Sphenodon_punctatus
ENSONIG00000009309	csde1	100	91.310	ENSSPAG00000000716	csde1	100	87.760	Stegastes_partitus
ENSONIG00000009309	csde1	100	75.580	ENSSSCG00000006752	CSDE1	100	73.195	Sus_scrofa
ENSONIG00000009309	csde1	100	76.005	ENSTGUG00000000972	CSDE1	100	76.005	Taeniopygia_guttata
ENSONIG00000009309	csde1	100	81.028	ENSTRUG00000007996	csde1	100	81.028	Takifugu_rubripes
ENSONIG00000009309	csde1	93	88.571	ENSTNIG00000010878	csde1	100	88.571	Tetraodon_nigroviridis
ENSONIG00000009309	csde1	76	75.949	ENSTBEG00000011880	-	60	75.949	Tupaia_belangeri
ENSONIG00000009309	csde1	100	72.338	ENSTTRG00000015583	CSDE1	94	72.338	Tursiops_truncatus
ENSONIG00000009309	csde1	90	67.809	ENSUAMG00000024289	-	99	67.809	Ursus_americanus
ENSONIG00000009309	csde1	92	82.781	ENSUAMG00000021779	-	96	83.051	Ursus_americanus
ENSONIG00000009309	csde1	100	66.830	ENSUMAG00000009720	-	97	66.830	Ursus_maritimus
ENSONIG00000009309	csde1	97	72.749	ENSUMAG00000011714	-	99	72.749	Ursus_maritimus
ENSONIG00000009309	csde1	100	75.117	ENSVPAG00000000749	CSDE1	79	75.117	Vicugna_pacos
ENSONIG00000009309	csde1	93	73.901	ENSVVUG00000009890	CSDE1	94	73.901	Vulpes_vulpes
ENSONIG00000009309	csde1	100	75.912	ENSXETG00000021448	csde1	100	75.912	Xenopus_tropicalis
ENSONIG00000009309	csde1	95	85.602	ENSXCOG00000000035	csde1	89	85.602	Xiphophorus_couchianus
ENSONIG00000009309	csde1	100	91.352	ENSXMAG00000009080	csde1	100	91.596	Xiphophorus_maculatus