EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000010452 (Gene tree)
Gene ID: 100693655
Gene Symbol: upf1
Alias: -
Full Name: regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 12097 bases
Position: chrGL831134.1:10636396-10648492
Accession: 100693655
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000013136	UPF1_Zn_bind	PF09416.10	1.5e-75	1	1
ENSONIP00000013137	UPF1_Zn_bind	PF09416.10	1.5e-75	1	1
ENSONIP00000013136	ResIII	PF04851.15	1.9e-05	1	1
ENSONIP00000013137	ResIII	PF04851.15	2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000013147	-	3345	-	ENSONIP00000013137	1114 (aa)	-	I3JW92
ENSONIT00000013146	-	5735	XM_003437758	ENSONIP00000013136	1109 (aa)	XP_003437806	I3JW91

Gene Model

Click here to download ENSONIG00000010452's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000010452's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000010452	upf1	100	92.722	ENSONIG00000012729	-	100	92.363

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000010452	upf1	100	91.166	ENSG00000005007	UPF1	100	89.982	Homo_sapiens
ENSONIG00000010452	upf1	100	98.832	ENSAPOG00000023773	upf1	100	98.832	Acanthochromis_polyacanthus
ENSONIG00000010452	upf1	100	92.722	ENSAPOG00000010916	-	100	92.453	Acanthochromis_polyacanthus
ENSONIG00000010452	upf1	100	90.685	ENSAMEG00000011474	UPF1	100	89.510	Ailuropoda_melanoleuca
ENSONIG00000010452	upf1	100	98.467	ENSACIG00000019949	upf1	100	98.467	Amphilophus_citrinellus
ENSONIG00000010452	upf1	94	92.486	ENSACIG00000010985	-	100	91.755	Amphilophus_citrinellus
ENSONIG00000010452	upf1	100	98.832	ENSAOCG00000018519	upf1	100	98.832	Amphiprion_ocellaris
ENSONIG00000010452	upf1	100	92.722	ENSAOCG00000006352	-	100	92.453	Amphiprion_ocellaris
ENSONIG00000010452	upf1	100	92.722	ENSAPEG00000006292	-	100	92.453	Amphiprion_percula
ENSONIG00000010452	upf1	100	98.832	ENSAPEG00000016344	upf1	100	98.832	Amphiprion_percula
ENSONIG00000010452	upf1	100	96.953	ENSATEG00000017867	upf1	100	96.953	Anabas_testudineus
ENSONIG00000010452	upf1	100	92.722	ENSATEG00000016606	-	100	92.453	Anabas_testudineus
ENSONIG00000010452	upf1	95	92.784	ENSAPLG00000009175	UPF1	100	91.426	Anas_platyrhynchos
ENSONIG00000010452	upf1	95	91.071	ENSANAG00000024107	UPF1	95	89.720	Aotus_nancymaae
ENSONIG00000010452	upf1	100	92.633	ENSACLG00000022630	-	100	92.363	Astatotilapia_calliptera
ENSONIG00000010452	upf1	100	98.557	ENSACLG00000007181	upf1	100	98.557	Astatotilapia_calliptera
ENSONIG00000010452	upf1	100	94.149	ENSAMXG00000042187	upf1	100	93.470	Astyanax_mexicanus
ENSONIG00000010452	upf1	100	90.702	ENSBTAG00000020922	UPF1	100	89.529	Bos_taurus
ENSONIG00000010452	upf1	87	51.689	WBGene00004880	smg-2	83	54.353	Caenorhabditis_elegans
ENSONIG00000010452	upf1	100	90.289	ENSCJAG00000019627	UPF1	100	89.121	Callithrix_jacchus
ENSONIG00000010452	upf1	100	90.464	ENSCAFG00000014578	UPF1	100	89.295	Canis_familiaris
ENSONIG00000010452	upf1	100	91.343	ENSCAFG00020012347	UPF1	100	90.158	Canis_lupus_dingo
ENSONIG00000010452	upf1	100	91.585	ENSCHIG00000011018	UPF1	100	90.396	Capra_hircus
ENSONIG00000010452	upf1	95	92.481	ENSTSYG00000008877	UPF1	98	91.121	Carlito_syrichta
ENSONIG00000010452	upf1	96	91.729	ENSCAPG00000005758	UPF1	95	91.028	Cavia_aperea
ENSONIG00000010452	upf1	100	91.459	ENSCPOG00000025463	UPF1	100	90.265	Cavia_porcellus
ENSONIG00000010452	upf1	100	91.166	ENSCCAG00000032175	UPF1	100	89.982	Cebus_capucinus
ENSONIG00000010452	upf1	94	92.453	ENSCATG00000040306	UPF1	98	90.689	Cercocebus_atys
ENSONIG00000010452	upf1	95	92.387	ENSCLAG00000004037	UPF1	99	91.121	Chinchilla_lanigera
ENSONIG00000010452	upf1	100	91.166	ENSCSAG00000005276	UPF1	100	89.982	Chlorocebus_sabaeus
ENSONIG00000010452	upf1	100	91.741	ENSCPBG00000012513	UPF1	100	90.459	Chrysemys_picta_bellii
ENSONIG00000010452	upf1	76	79.812	ENSCING00000021399	-	99	79.577	Ciona_intestinalis
ENSONIG00000010452	upf1	99	72.089	ENSCSAVG00000006533	-	99	72.202	Ciona_savignyi
ENSONIG00000010452	upf1	95	92.387	ENSCANG00000029819	UPF1	97	91.028	Colobus_angolensis_palliatus
ENSONIG00000010452	upf1	100	91.304	ENSCGRG00001021067	Upf1	100	90.203	Cricetulus_griseus_chok1gshd
ENSONIG00000010452	upf1	95	92.293	ENSCGRG00000013480	Upf1	98	91.028	Cricetulus_griseus_crigri
ENSONIG00000010452	upf1	100	93.435	ENSCSEG00000016159	-	100	92.301	Cynoglossus_semilaevis
ENSONIG00000010452	upf1	100	89.478	ENSCSEG00000017239	upf1	100	89.568	Cynoglossus_semilaevis
ENSONIG00000010452	upf1	100	92.363	ENSCVAG00000010561	upf1	100	92.093	Cyprinodon_variegatus
ENSONIG00000010452	upf1	100	93.969	ENSDARG00000016302	upf1	100	93.560	Danio_rerio
ENSONIG00000010452	upf1	95	90.141	ENSDORG00000009984	Upf1	95	88.889	Dipodomys_ordii
ENSONIG00000010452	upf1	84	72.650	FBgn0030354	Upf1	82	70.769	Drosophila_melanogaster
ENSONIG00000010452	upf1	54	86.755	ENSEBUG00000010069	upf1	96	87.086	Eptatretus_burgeri
ENSONIG00000010452	upf1	100	91.585	ENSEASG00005006549	UPF1	100	90.396	Equus_asinus_asinus
ENSONIG00000010452	upf1	100	91.585	ENSECAG00000010639	UPF1	100	90.396	Equus_caballus
ENSONIG00000010452	upf1	100	92.838	ENSELUG00000012916	-	100	92.000	Esox_lucius
ENSONIG00000010452	upf1	100	94.505	ENSELUG00000020917	upf1	100	93.874	Esox_lucius
ENSONIG00000010452	upf1	100	90.464	ENSFCAG00000009757	UPF1	100	89.295	Felis_catus
ENSONIG00000010452	upf1	95	93.302	ENSFALG00000009312	UPF1	96	91.932	Ficedula_albicollis
ENSONIG00000010452	upf1	95	92.293	ENSFDAG00000014816	UPF1	99	91.028	Fukomys_damarensis
ENSONIG00000010452	upf1	100	93.100	ENSFHEG00000006428	upf1	98	95.253	Fundulus_heteroclitus
ENSONIG00000010452	upf1	87	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSONIG00000010452	upf1	100	91.022	ENSGMOG00000007541	upf1	100	90.957	Gadus_morhua
ENSONIG00000010452	upf1	100	91.504	ENSGALG00000003220	UPF1	100	90.141	Gallus_gallus
ENSONIG00000010452	upf1	100	92.453	ENSGAFG00000004831	upf1	100	92.115	Gambusia_affinis
ENSONIG00000010452	upf1	62	96.542	ENSGAFG00000015443	-	85	96.542	Gambusia_affinis
ENSONIG00000010452	upf1	100	92.150	ENSGAGG00000022217	UPF1	100	91.127	Gopherus_agassizii
ENSONIG00000010452	upf1	95	93.352	ENSGGOG00000002608	UPF1	99	91.974	Gorilla_gorilla
ENSONIG00000010452	upf1	88	98.718	ENSHBUG00000014694	upf1	100	98.718	Haplochromis_burtoni
ENSONIG00000010452	upf1	86	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSONIG00000010452	upf1	100	90.114	ENSHGLG00000010900	UPF1	100	89.208	Heterocephalus_glaber_female
ENSONIG00000010452	upf1	95	90.508	ENSHGLG00100005904	UPF1	96	89.439	Heterocephalus_glaber_male
ENSONIG00000010452	upf1	100	92.093	ENSHCOG00000008918	upf1	100	92.129	Hippocampus_comes
ENSONIG00000010452	upf1	100	94.239	ENSIPUG00000005108	UPF1	100	93.739	Ictalurus_punctatus
ENSONIG00000010452	upf1	100	91.078	ENSSTOG00000009196	UPF1	100	89.982	Ictidomys_tridecemlineatus
ENSONIG00000010452	upf1	100	90.757	ENSJJAG00000023151	Upf1	100	89.667	Jaculus_jaculus
ENSONIG00000010452	upf1	100	92.363	ENSKMAG00000004962	upf1	100	92.093	Kryptolebias_marmoratus
ENSONIG00000010452	upf1	100	92.729	ENSLBEG00000027848	-	100	92.101	Labrus_bergylta
ENSONIG00000010452	upf1	100	97.035	ENSLBEG00000014862	upf1	100	97.035	Labrus_bergylta
ENSONIG00000010452	upf1	64	92.827	ENSLACG00000008482	UPF1	100	91.061	Latimeria_chalumnae
ENSONIG00000010452	upf1	100	93.795	ENSLOCG00000002072	upf1	100	93.076	Lepisosteus_oculatus
ENSONIG00000010452	upf1	100	90.359	ENSLAFG00000014963	UPF1	100	89.102	Loxodonta_africana
ENSONIG00000010452	upf1	100	90.925	ENSMFAG00000037748	UPF1	100	89.746	Macaca_fascicularis
ENSONIG00000010452	upf1	100	90.685	ENSMMUG00000023286	UPF1	100	89.510	Macaca_mulatta
ENSONIG00000010452	upf1	100	90.925	ENSMNEG00000000046	UPF1	100	89.746	Macaca_nemestrina
ENSONIG00000010452	upf1	95	92.387	ENSMLEG00000028404	UPF1	99	91.028	Mandrillus_leucophaeus
ENSONIG00000010452	upf1	100	92.549	ENSMAMG00000006231	-	100	92.280	Mastacembelus_armatus
ENSONIG00000010452	upf1	100	97.401	ENSMAMG00000006229	upf1	100	97.401	Mastacembelus_armatus
ENSONIG00000010452	upf1	100	92.633	ENSMZEG00005016386	-	100	92.363	Maylandia_zebra
ENSONIG00000010452	upf1	100	99.729	ENSMZEG00005003489	upf1	100	99.729	Maylandia_zebra
ENSONIG00000010452	upf1	95	92.300	ENSMGAG00000004745	UPF1	100	90.943	Meleagris_gallopavo
ENSONIG00000010452	upf1	95	92.293	ENSMAUG00000011398	Upf1	95	91.028	Mesocricetus_auratus
ENSONIG00000010452	upf1	100	91.254	ENSMICG00000001659	UPF1	100	90.070	Microcebus_murinus
ENSONIG00000010452	upf1	100	90.598	ENSMOCG00000005699	Upf1	100	89.598	Microtus_ochrogaster
ENSONIG00000010452	upf1	95	89.972	ENSMMOG00000007537	-	99	89.688	Mola_mola
ENSONIG00000010452	upf1	100	95.586	ENSMMOG00000007881	upf1	100	95.586	Mola_mola
ENSONIG00000010452	upf1	100	90.401	ENSMODG00000003689	UPF1	100	89.323	Monodelphis_domestica
ENSONIG00000010452	upf1	100	91.406	ENSMALG00000018100	-	100	91.137	Monopterus_albus
ENSONIG00000010452	upf1	100	95.315	ENSMALG00000000144	upf1	100	95.315	Monopterus_albus
ENSONIG00000010452	upf1	100	91.216	MGP_CAROLIEiJ_G0031142	Upf1	100	90.115	Mus_caroli
ENSONIG00000010452	upf1	100	91.216	ENSMUSG00000058301	Upf1	100	90.115	Mus_musculus
ENSONIG00000010452	upf1	100	91.216	MGP_PahariEiJ_G0021607	Upf1	100	90.115	Mus_pahari
ENSONIG00000010452	upf1	100	91.216	MGP_SPRETEiJ_G0032260	Upf1	100	90.115	Mus_spretus
ENSONIG00000010452	upf1	100	91.343	ENSMPUG00000015516	UPF1	100	90.158	Mustela_putorius_furo
ENSONIG00000010452	upf1	99	91.223	ENSMLUG00000012122	UPF1	99	90.035	Myotis_lucifugus
ENSONIG00000010452	upf1	100	90.184	ENSNGAG00000024107	Upf1	100	89.102	Nannospalax_galili
ENSONIG00000010452	upf1	100	96.483	ENSNBRG00000000670	upf1	100	96.483	Neolamprologus_brichardi
ENSONIG00000010452	upf1	100	89.255	ENSNBRG00000022069	-	100	91.451	Neolamprologus_brichardi
ENSONIG00000010452	upf1	95	86.748	ENSNLEG00000006062	UPF1	99	85.421	Nomascus_leucogenys
ENSONIG00000010452	upf1	83	86.998	ENSMEUG00000014146	-	83	84.310	Notamacropus_eugenii
ENSONIG00000010452	upf1	95	86.705	ENSOPRG00000014018	UPF1	99	85.175	Ochotona_princeps
ENSONIG00000010452	upf1	100	91.451	ENSODEG00000012426	UPF1	100	90.257	Octodon_degus
ENSONIG00000010452	upf1	100	90.526	ENSOANG00000004568	UPF1	100	89.258	Ornithorhynchus_anatinus
ENSONIG00000010452	upf1	100	92.722	ENSORLG00000008453	upf1	100	91.914	Oryzias_latipes
ENSONIG00000010452	upf1	100	92.639	ENSORLG00020014758	upf1	100	91.831	Oryzias_latipes_hni
ENSONIG00000010452	upf1	100	92.639	ENSORLG00015010165	upf1	100	91.831	Oryzias_latipes_hsok
ENSONIG00000010452	upf1	100	93.172	ENSOMEG00000003665	upf1	100	92.363	Oryzias_melastigma
ENSONIG00000010452	upf1	100	91.254	ENSOGAG00000012866	UPF1	100	90.070	Otolemur_garnettii
ENSONIG00000010452	upf1	96	89.536	ENSOARG00000010739	UPF1	100	88.145	Ovis_aries
ENSONIG00000010452	upf1	95	92.322	ENSPPAG00000043884	UPF1	96	90.968	Pan_paniscus
ENSONIG00000010452	upf1	100	90.464	ENSPPRG00000023470	UPF1	100	89.295	Panthera_pardus
ENSONIG00000010452	upf1	95	91.374	ENSPTIG00000010159	UPF1	99	90.009	Panthera_tigris_altaica
ENSONIG00000010452	upf1	100	90.925	ENSPTRG00000010721	UPF1	100	89.746	Pan_troglodytes
ENSONIG00000010452	upf1	100	90.925	ENSPANG00000008847	UPF1	100	89.746	Papio_anubis
ENSONIG00000010452	upf1	92	94.897	ENSPKIG00000006069	upf1	95	97.065	Paramormyrops_kingsleyae
ENSONIG00000010452	upf1	70	91.645	ENSPSIG00000009491	UPF1	100	89.796	Pelodiscus_sinensis
ENSONIG00000010452	upf1	100	92.626	ENSPMGG00000017327	upf1	100	92.563	Periophthalmus_magnuspinnatus
ENSONIG00000010452	upf1	100	90.598	ENSPEMG00000001085	Upf1	100	89.510	Peromyscus_maniculatus_bairdii
ENSONIG00000010452	upf1	100	86.976	ENSPMAG00000001206	upf1	100	86.351	Petromyzon_marinus
ENSONIG00000010452	upf1	100	91.777	ENSPCIG00000006156	UPF1	100	90.589	Phascolarctos_cinereus
ENSONIG00000010452	upf1	100	92.453	ENSPLAG00000016232	-	100	92.115	Poecilia_latipinna
ENSONIG00000010452	upf1	100	95.131	ENSPLAG00000018155	-	100	95.131	Poecilia_latipinna
ENSONIG00000010452	upf1	100	94.770	ENSPMEG00000011443	-	100	93.778	Poecilia_mexicana
ENSONIG00000010452	upf1	100	92.370	ENSPMEG00000016319	-	100	92.032	Poecilia_mexicana
ENSONIG00000010452	upf1	100	92.363	ENSPREG00000011247	-	100	92.025	Poecilia_reticulata
ENSONIG00000010452	upf1	100	94.779	ENSPREG00000009940	upf1	100	93.711	Poecilia_reticulata
ENSONIG00000010452	upf1	100	85.214	ENSPPYG00000009752	UPF1	100	83.955	Pongo_abelii
ENSONIG00000010452	upf1	76	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSONIG00000010452	upf1	100	90.941	ENSPCOG00000023813	UPF1	100	89.764	Propithecus_coquereli
ENSONIG00000010452	upf1	67	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSONIG00000010452	upf1	100	92.633	ENSPNYG00000016731	-	100	92.363	Pundamilia_nyererei
ENSONIG00000010452	upf1	100	99.729	ENSPNYG00000003694	upf1	100	99.729	Pundamilia_nyererei
ENSONIG00000010452	upf1	100	94.239	ENSPNAG00000025614	upf1	100	93.560	Pygocentrus_nattereri
ENSONIG00000010452	upf1	100	91.216	ENSRNOG00000020134	Upf1	100	90.115	Rattus_norvegicus
ENSONIG00000010452	upf1	95	90.038	ENSRBIG00000013894	UPF1	98	91.631	Rhinopithecus_bieti
ENSONIG00000010452	upf1	95	92.387	ENSRROG00000040935	UPF1	98	91.631	Rhinopithecus_roxellana
ENSONIG00000010452	upf1	72	57.697	YMR080C	NAM7	84	56.760	Saccharomyces_cerevisiae
ENSONIG00000010452	upf1	95	92.380	ENSSBOG00000023632	UPF1	96	91.020	Saimiri_boliviensis_boliviensis
ENSONIG00000010452	upf1	95	92.683	ENSSHAG00000010499	UPF1	100	91.325	Sarcophilus_harrisii
ENSONIG00000010452	upf1	100	93.801	ENSSFOG00015021095	upf1	100	92.768	Scleropages_formosus
ENSONIG00000010452	upf1	100	92.819	ENSSMAG00000021018	-	100	92.460	Scophthalmus_maximus
ENSONIG00000010452	upf1	100	96.679	ENSSMAG00000005055	upf1	100	96.679	Scophthalmus_maximus
ENSONIG00000010452	upf1	100	92.729	ENSSDUG00000009629	-	100	92.460	Seriola_dumerili
ENSONIG00000010452	upf1	100	97.670	ENSSDUG00000013320	upf1	100	97.670	Seriola_dumerili
ENSONIG00000010452	upf1	100	92.729	ENSSLDG00000006878	-	100	92.460	Seriola_lalandi_dorsalis
ENSONIG00000010452	upf1	100	96.953	ENSSLDG00000020868	upf1	100	96.953	Seriola_lalandi_dorsalis
ENSONIG00000010452	upf1	100	91.800	ENSSPUG00000010538	UPF1	98	94.229	Sphenodon_punctatus
ENSONIG00000010452	upf1	100	94.519	ENSSPAG00000000003	upf1	100	94.519	Stegastes_partitus
ENSONIG00000010452	upf1	100	93.082	ENSSPAG00000011521	-	100	92.453	Stegastes_partitus
ENSONIG00000010452	upf1	100	91.497	ENSSSCG00000039301	UPF1	99	91.989	Sus_scrofa
ENSONIG00000010452	upf1	82	87.340	ENSTGUG00000001057	UPF1	100	91.124	Taeniopygia_guttata
ENSONIG00000010452	upf1	100	94.609	ENSTRUG00000000150	upf1	100	94.319	Takifugu_rubripes
ENSONIG00000010452	upf1	100	91.734	ENSTRUG00000005131	-	100	91.234	Takifugu_rubripes
ENSONIG00000010452	upf1	100	87.865	ENSTTRG00000011544	UPF1	100	86.608	Tursiops_truncatus
ENSONIG00000010452	upf1	100	91.343	ENSUAMG00000007093	UPF1	100	90.158	Ursus_americanus
ENSONIG00000010452	upf1	95	93.460	ENSUMAG00000006652	UPF1	99	92.269	Ursus_maritimus
ENSONIG00000010452	upf1	100	91.343	ENSVVUG00000007797	UPF1	100	90.158	Vulpes_vulpes
ENSONIG00000010452	upf1	100	79.076	ENSXETG00000013602	upf1	100	78.204	Xenopus_tropicalis
ENSONIG00000010452	upf1	94	92.617	ENSXCOG00000005764	-	99	92.256	Xiphophorus_couchianus
ENSONIG00000010452	upf1	97	93.383	ENSXCOG00000015275	-	96	93.383	Xiphophorus_couchianus
ENSONIG00000010452	upf1	100	92.460	ENSXMAG00000002540	-	100	92.122	Xiphophorus_maculatus
ENSONIG00000010452	upf1	100	93.417	ENSXMAG00000001703	-	100	93.417	Xiphophorus_maculatus