EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000010590 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: -
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 18563 bases
Position: chrGL831134.1:11605559-11624121
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000013314	ResIII	PF04851.15	9.1e-12	1	1
ENSONIP00000013314	DEAD	PF00270.29	1.7e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000013324	-	4918	-	ENSONIP00000013314	1046 (aa)	-	I3JWR9

Gene Model

Click here to download ENSONIG00000010590's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000010590's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000010590	hfm1	70	32.870	ENSONIG00000016540	ascc3	61	32.870
ENSONIG00000010590	hfm1	81	31.726	ENSONIG00000010714	snrnp200	73	31.726

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000010590	hfm1	99	62.452	ENSG00000162669	HFM1	71	62.500	Homo_sapiens
ENSONIG00000010590	hfm1	77	87.906	ENSAPOG00000005304	hfm1	93	83.794	Acanthochromis_polyacanthus
ENSONIG00000010590	hfm1	100	61.678	ENSAMEG00000000432	HFM1	71	61.716	Ailuropoda_melanoleuca
ENSONIG00000010590	hfm1	100	78.759	ENSACIG00000021553	hfm1	92	78.612	Amphilophus_citrinellus
ENSONIG00000010590	hfm1	76	88.384	ENSAOCG00000022839	hfm1	96	88.384	Amphiprion_ocellaris
ENSONIG00000010590	hfm1	76	88.861	ENSAPEG00000014316	hfm1	96	88.861	Amphiprion_percula
ENSONIG00000010590	hfm1	98	78.189	ENSATEG00000019181	hfm1	89	77.112	Anabas_testudineus
ENSONIG00000010590	hfm1	99	60.952	ENSAPLG00000013639	HFM1	68	63.479	Anas_platyrhynchos
ENSONIG00000010590	hfm1	99	60.325	ENSANAG00000029513	HFM1	71	60.348	Aotus_nancymaae
ENSONIG00000010590	hfm1	97	84.216	ENSACLG00000009033	hfm1	98	91.924	Astatotilapia_calliptera
ENSONIG00000010590	hfm1	95	70.080	ENSAMXG00000006108	hfm1	69	70.080	Astyanax_mexicanus
ENSONIG00000010590	hfm1	99	61.950	ENSBTAG00000020856	HFM1	71	61.992	Bos_taurus
ENSONIG00000010590	hfm1	99	61.568	ENSCJAG00000001843	HFM1	71	61.605	Callithrix_jacchus
ENSONIG00000010590	hfm1	99	61.627	ENSCAFG00000020187	HFM1	71	61.412	Canis_familiaris
ENSONIG00000010590	hfm1	99	62.102	ENSTSYG00000014250	HFM1	71	62.146	Carlito_syrichta
ENSONIG00000010590	hfm1	99	60.812	ENSCPOG00000007421	HFM1	73	60.840	Cavia_porcellus
ENSONIG00000010590	hfm1	100	61.010	ENSCCAG00000033206	HFM1	72	61.138	Cebus_capucinus
ENSONIG00000010590	hfm1	99	62.343	ENSCATG00000030987	HFM1	70	62.488	Cercocebus_atys
ENSONIG00000010590	hfm1	99	59.300	ENSCLAG00000005173	HFM1	66	62.892	Chinchilla_lanigera
ENSONIG00000010590	hfm1	66	52.646	ENSCSAVG00000005094	-	100	52.646	Ciona_savignyi
ENSONIG00000010590	hfm1	95	58.442	ENSCGRG00001016995	Hfm1	70	58.544	Cricetulus_griseus_chok1gshd
ENSONIG00000010590	hfm1	99	60.174	ENSCGRG00000017181	Hfm1	71	60.311	Cricetulus_griseus_crigri
ENSONIG00000010590	hfm1	99	72.295	ENSCSEG00000017659	hfm1	95	72.086	Cynoglossus_semilaevis
ENSONIG00000010590	hfm1	68	83.544	ENSCVAG00000005075	hfm1	86	83.544	Cyprinodon_variegatus
ENSONIG00000010590	hfm1	85	69.663	ENSDARG00000104288	hfm1	81	69.663	Danio_rerio
ENSONIG00000010590	hfm1	100	58.668	ENSDNOG00000004776	HFM1	67	62.038	Dasypus_novemcinctus
ENSONIG00000010590	hfm1	100	58.598	ENSDORG00000014661	Hfm1	72	58.601	Dipodomys_ordii
ENSONIG00000010590	hfm1	96	60.552	ENSEASG00005015424	HFM1	95	60.479	Equus_asinus_asinus
ENSONIG00000010590	hfm1	99	59.761	ENSECAG00000024039	HFM1	67	62.851	Equus_caballus
ENSONIG00000010590	hfm1	87	76.362	ENSELUG00000018944	hfm1	97	76.362	Esox_lucius
ENSONIG00000010590	hfm1	100	61.678	ENSFCAG00000029116	HFM1	71	61.716	Felis_catus
ENSONIG00000010590	hfm1	98	62.222	ENSFALG00000001781	HFM1	72	62.042	Ficedula_albicollis
ENSONIG00000010590	hfm1	99	59.633	ENSFDAG00000020816	HFM1	67	63.126	Fukomys_damarensis
ENSONIG00000010590	hfm1	92	71.488	ENSGMOG00000017436	hfm1	99	71.592	Gadus_morhua
ENSONIG00000010590	hfm1	98	74.125	ENSGAFG00000018093	hfm1	93	81.763	Gambusia_affinis
ENSONIG00000010590	hfm1	92	78.112	ENSGACG00000015686	hfm1	99	78.734	Gasterosteus_aculeatus
ENSONIG00000010590	hfm1	99	62.355	ENSGGOG00000038524	HFM1	71	62.402	Gorilla_gorilla
ENSONIG00000010590	hfm1	98	86.013	ENSHBUG00000007309	hfm1	94	86.013	Haplochromis_burtoni
ENSONIG00000010590	hfm1	78	79.238	ENSHCOG00000019632	hfm1	97	79.238	Hippocampus_comes
ENSONIG00000010590	hfm1	91	69.958	ENSIPUG00000017020	hfm1	92	72.308	Ictalurus_punctatus
ENSONIG00000010590	hfm1	95	61.416	ENSJJAG00000017198	Hfm1	71	61.416	Jaculus_jaculus
ENSONIG00000010590	hfm1	85	79.268	ENSKMAG00000002282	hfm1	90	79.268	Kryptolebias_marmoratus
ENSONIG00000010590	hfm1	99	72.983	ENSLBEG00000006759	hfm1	98	81.154	Labrus_bergylta
ENSONIG00000010590	hfm1	92	66.086	ENSLACG00000010698	HFM1	91	65.881	Latimeria_chalumnae
ENSONIG00000010590	hfm1	100	68.316	ENSLOCG00000004931	hfm1	96	68.467	Lepisosteus_oculatus
ENSONIG00000010590	hfm1	66	69.710	ENSLAFG00000015903	-	93	69.710	Loxodonta_africana
ENSONIG00000010590	hfm1	99	59.117	ENSMFAG00000003649	HFM1	71	59.223	Macaca_fascicularis
ENSONIG00000010590	hfm1	99	61.627	ENSMMUG00000006819	HFM1	71	61.762	Macaca_mulatta
ENSONIG00000010590	hfm1	78	89.172	ENSMAMG00000004623	hfm1	93	89.172	Mastacembelus_armatus
ENSONIG00000010590	hfm1	97	84.312	ENSMZEG00005004679	hfm1	98	92.043	Maylandia_zebra
ENSONIG00000010590	hfm1	74	67.613	ENSMGAG00000008437	HFM1	96	67.613	Meleagris_gallopavo
ENSONIG00000010590	hfm1	99	59.981	ENSMAUG00000018858	Hfm1	71	60.097	Mesocricetus_auratus
ENSONIG00000010590	hfm1	99	61.223	ENSMICG00000037935	HFM1	71	61.353	Microcebus_murinus
ENSONIG00000010590	hfm1	99	60.707	ENSMOCG00000014812	Hfm1	72	60.832	Microtus_ochrogaster
ENSONIG00000010590	hfm1	86	79.111	ENSMMOG00000006148	hfm1	94	82.901	Mola_mola
ENSONIG00000010590	hfm1	96	76.984	ENSMALG00000002401	hfm1	94	84.383	Monopterus_albus
ENSONIG00000010590	hfm1	93	69.504	MGP_CAROLIEiJ_G0027496	Hfm1	65	69.504	Mus_caroli
ENSONIG00000010590	hfm1	99	60.134	ENSMUSG00000043410	Hfm1	71	60.251	Mus_musculus
ENSONIG00000010590	hfm1	99	60.096	MGP_PahariEiJ_G0017268	Hfm1	71	60.213	Mus_pahari
ENSONIG00000010590	hfm1	99	60.687	MGP_SPRETEiJ_G0028495	Hfm1	71	60.811	Mus_spretus
ENSONIG00000010590	hfm1	99	59.103	ENSMPUG00000004594	HFM1	67	62.537	Mustela_putorius_furo
ENSONIG00000010590	hfm1	99	60.664	ENSMLUG00000010200	HFM1	71	60.690	Myotis_lucifugus
ENSONIG00000010590	hfm1	97	81.460	ENSNBRG00000002910	hfm1	97	92.727	Neolamprologus_brichardi
ENSONIG00000010590	hfm1	99	59.577	ENSNLEG00000010285	HFM1	71	59.591	Nomascus_leucogenys
ENSONIG00000010590	hfm1	91	59.000	ENSMEUG00000015788	HFM1	65	59.000	Notamacropus_eugenii
ENSONIG00000010590	hfm1	81	61.657	ENSOPRG00000013916	HFM1	59	61.657	Ochotona_princeps
ENSONIG00000010590	hfm1	78	80.911	ENSORLG00000026844	hfm1	99	80.911	Oryzias_latipes
ENSONIG00000010590	hfm1	93	69.898	ENSORLG00020002951	hfm1	78	69.706	Oryzias_latipes_hni
ENSONIG00000010590	hfm1	100	72.601	ENSOMEG00000016474	hfm1	74	72.761	Oryzias_melastigma
ENSONIG00000010590	hfm1	94	63.728	ENSOGAG00000032369	HFM1	80	63.728	Otolemur_garnettii
ENSONIG00000010590	hfm1	99	61.472	ENSOARG00000015812	HFM1	71	61.509	Ovis_aries
ENSONIG00000010590	hfm1	99	62.645	ENSPPAG00000024582	HFM1	77	62.695	Pan_paniscus
ENSONIG00000010590	hfm1	100	61.582	ENSPPRG00000003270	HFM1	71	61.620	Panthera_pardus
ENSONIG00000010590	hfm1	100	61.678	ENSPTIG00000018881	HFM1	71	61.716	Panthera_tigris_altaica
ENSONIG00000010590	hfm1	99	62.548	ENSPTRG00000000948	HFM1	71	62.598	Pan_troglodytes
ENSONIG00000010590	hfm1	99	62.052	ENSPANG00000009838	HFM1	70	62.194	Papio_anubis
ENSONIG00000010590	hfm1	85	71.173	ENSPKIG00000003810	hfm1	96	71.687	Paramormyrops_kingsleyae
ENSONIG00000010590	hfm1	79	77.818	ENSPMGG00000011059	hfm1	99	77.818	Periophthalmus_magnuspinnatus
ENSONIG00000010590	hfm1	99	60.670	ENSPEMG00000022852	Hfm1	71	60.794	Peromyscus_maniculatus_bairdii
ENSONIG00000010590	hfm1	95	62.326	ENSPCIG00000014233	HFM1	67	62.326	Phascolarctos_cinereus
ENSONIG00000010590	hfm1	98	76.510	ENSPFOG00000017194	hfm1	98	76.476	Poecilia_formosa
ENSONIG00000010590	hfm1	98	75.678	ENSPLAG00000000571	hfm1	90	75.588	Poecilia_latipinna
ENSONIG00000010590	hfm1	98	75.532	ENSPMEG00000019475	hfm1	91	75.516	Poecilia_mexicana
ENSONIG00000010590	hfm1	98	76.321	ENSPREG00000007803	hfm1	93	81.620	Poecilia_reticulata
ENSONIG00000010590	hfm1	99	62.222	ENSPPYG00000001163	HFM1	71	62.268	Pongo_abelii
ENSONIG00000010590	hfm1	99	55.792	ENSPVAG00000009713	HFM1	73	55.792	Pteropus_vampyrus
ENSONIG00000010590	hfm1	97	84.119	ENSPNYG00000001795	hfm1	98	91.924	Pundamilia_nyererei
ENSONIG00000010590	hfm1	83	72.018	ENSPNAG00000010865	hfm1	86	72.018	Pygocentrus_nattereri
ENSONIG00000010590	hfm1	99	59.847	ENSRNOG00000023299	Hfm1	71	59.961	Rattus_norvegicus
ENSONIG00000010590	hfm1	99	62.052	ENSRROG00000045569	HFM1	70	62.194	Rhinopithecus_roxellana
ENSONIG00000010590	hfm1	95	62.826	ENSSBOG00000027456	HFM1	70	62.826	Saimiri_boliviensis_boliviensis
ENSONIG00000010590	hfm1	58	68.293	ENSSHAG00000014616	-	70	68.293	Sarcophilus_harrisii
ENSONIG00000010590	hfm1	94	71.229	ENSSFOG00015020129	hfm1	67	71.229	Scleropages_formosus
ENSONIG00000010590	hfm1	85	83.055	ENSSMAG00000006907	hfm1	89	80.670	Scophthalmus_maximus
ENSONIG00000010590	hfm1	79	84.606	ENSSDUG00000011424	hfm1	93	84.606	Seriola_dumerili
ENSONIG00000010590	hfm1	79	84.439	ENSSLDG00000016386	hfm1	92	84.439	Seriola_lalandi_dorsalis
ENSONIG00000010590	hfm1	95	73.212	ENSSPAG00000001023	hfm1	93	84.236	Stegastes_partitus
ENSONIG00000010590	hfm1	99	59.286	ENSSSCG00000006912	HFM1	72	62.637	Sus_scrofa
ENSONIG00000010590	hfm1	92	64.375	ENSTGUG00000006172	HFM1	99	64.375	Taeniopygia_guttata
ENSONIG00000010590	hfm1	99	61.185	ENSTTRG00000013933	HFM1	72	61.315	Tursiops_truncatus
ENSONIG00000010590	hfm1	99	59.351	ENSVPAG00000011331	HFM1	71	59.363	Vicugna_pacos
ENSONIG00000010590	hfm1	96	59.786	ENSVVUG00000020760	HFM1	97	59.763	Vulpes_vulpes
ENSONIG00000010590	hfm1	80	81.699	ENSXMAG00000004178	hfm1	93	81.601	Xiphophorus_maculatus