EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000012010 (Gene tree)
Gene ID: 100707519
Gene Symbol: pspc1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 13493 bases
Position: chrGL831144.1:1812050-1825542
Accession: 100707519
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000015118	RRM_1	PF00076.22	6.2e-32	1	2
ENSONIP00000015118	RRM_1	PF00076.22	6.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000015131	-	1903	XM_003440910	ENSONIP00000015118	518 (aa)	XP_003440958	I3K1X3

Gene Model

Click here to download ENSONIG00000012010's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000012010's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000012010	pspc1	87	55.066	ENSONIG00000017737	sfpq	60	58.056
ENSONIG00000012010	pspc1	80	59.135	ENSONIG00000020497	nono	96	54.194

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000012010	pspc1	87	68.856	ENSG00000121390	PSPC1	98	69.598	Homo_sapiens
ENSONIG00000012010	pspc1	99	87.931	ENSAPOG00000015946	pspc1	100	87.165	Acanthochromis_polyacanthus
ENSONIG00000012010	pspc1	99	63.603	ENSAMEG00000017420	PSPC1	99	64.338	Ailuropoda_melanoleuca
ENSONIG00000012010	pspc1	99	84.971	ENSACIG00000018695	pspc1	100	83.815	Amphilophus_citrinellus
ENSONIG00000012010	pspc1	99	87.786	ENSAOCG00000005279	pspc1	100	87.214	Amphiprion_ocellaris
ENSONIG00000012010	pspc1	99	88.292	ENSAPEG00000015927	pspc1	100	87.908	Amphiprion_percula
ENSONIG00000012010	pspc1	99	76.099	ENSATEG00000004878	pspc1	100	74.379	Anabas_testudineus
ENSONIG00000012010	pspc1	69	64.516	ENSAPLG00000003643	SFPQ	80	57.576	Anas_platyrhynchos
ENSONIG00000012010	pspc1	76	66.587	ENSAPLG00000006246	PSPC1	100	69.024	Anas_platyrhynchos
ENSONIG00000012010	pspc1	88	66.944	ENSACAG00000002093	PSPC1	99	63.670	Anolis_carolinensis
ENSONIG00000012010	pspc1	67	59.104	ENSACAG00000013307	-	69	53.070	Anolis_carolinensis
ENSONIG00000012010	pspc1	99	62.888	ENSANAG00000000059	PSPC1	98	68.957	Aotus_nancymaae
ENSONIG00000012010	pspc1	99	87.645	ENSACLG00000027220	pspc1	100	87.332	Astatotilapia_calliptera
ENSONIG00000012010	pspc1	99	68.819	ENSAMXG00000036881	pspc1	100	69.963	Astyanax_mexicanus
ENSONIG00000012010	pspc1	99	63.889	ENSBTAG00000003934	PSPC1	99	64.981	Bos_taurus
ENSONIG00000012010	pspc1	99	62.888	ENSCJAG00000004554	PSPC1	99	64.325	Callithrix_jacchus
ENSONIG00000012010	pspc1	87	69.068	ENSCAFG00020002009	PSPC1	98	70.455	Canis_lupus_dingo
ENSONIG00000012010	pspc1	99	63.889	ENSCHIG00000016708	PSPC1	99	64.981	Capra_hircus
ENSONIG00000012010	pspc1	75	63.196	ENSTSYG00000032882	PSPC1	88	62.654	Carlito_syrichta
ENSONIG00000012010	pspc1	99	63.216	ENSCPOG00000000395	PSPC1	98	71.282	Cavia_porcellus
ENSONIG00000012010	pspc1	99	62.888	ENSCCAG00000033498	PSPC1	99	64.325	Cebus_capucinus
ENSONIG00000012010	pspc1	87	68.644	ENSCATG00000036434	PSPC1	90	79.630	Cercocebus_atys
ENSONIG00000012010	pspc1	77	67.299	ENSCLAG00000005241	PSPC1	89	69.802	Chinchilla_lanigera
ENSONIG00000012010	pspc1	99	59.563	ENSCHOG00000008913	PSPC1	99	60.958	Choloepus_hoffmanni
ENSONIG00000012010	pspc1	87	67.296	ENSCPBG00000020859	PSPC1	88	69.444	Chrysemys_picta_bellii
ENSONIG00000012010	pspc1	56	58.419	ENSCSAVG00000003533	-	53	59.712	Ciona_savignyi
ENSONIG00000012010	pspc1	51	81.679	ENSCANG00000018948	PSPC1	87	81.679	Colobus_angolensis_palliatus
ENSONIG00000012010	pspc1	99	62.752	ENSCGRG00001018368	Pspc1	99	64.259	Cricetulus_griseus_chok1gshd
ENSONIG00000012010	pspc1	99	62.752	ENSCGRG00000011724	Pspc1	99	64.259	Cricetulus_griseus_crigri
ENSONIG00000012010	pspc1	99	78.571	ENSCVAG00000007679	-	100	78.185	Cyprinodon_variegatus
ENSONIG00000012010	pspc1	99	66.292	ENSDARG00000006621	pspc1	100	71.078	Danio_rerio
ENSONIG00000012010	pspc1	99	63.586	ENSDNOG00000011078	PSPC1	99	64.564	Dasypus_novemcinctus
ENSONIG00000012010	pspc1	99	60.727	ENSDORG00000016050	Pspc1	99	61.967	Dipodomys_ordii
ENSONIG00000012010	pspc1	53	78.218	ENSETEG00000000502	-	72	78.218	Echinops_telfairi
ENSONIG00000012010	pspc1	90	53.465	ENSEBUG00000003964	-	82	53.173	Eptatretus_burgeri
ENSONIG00000012010	pspc1	57	43.302	ENSEBUG00000010133	pspc1	77	44.746	Eptatretus_burgeri
ENSONIG00000012010	pspc1	99	64.126	ENSEASG00005000119	PSPC1	98	71.282	Equus_asinus_asinus
ENSONIG00000012010	pspc1	99	64.126	ENSECAG00000017286	PSPC1	98	71.282	Equus_caballus
ENSONIG00000012010	pspc1	63	59.509	ENSEEUG00000011288	-	61	59.633	Erinaceus_europaeus
ENSONIG00000012010	pspc1	99	70.111	ENSELUG00000003746	pspc1	100	70.295	Esox_lucius
ENSONIG00000012010	pspc1	99	63.586	ENSFCAG00000027841	PSPC1	98	70.175	Felis_catus
ENSONIG00000012010	pspc1	89	66.803	ENSFALG00000008750	PSPC1	99	63.451	Ficedula_albicollis
ENSONIG00000012010	pspc1	99	63.569	ENSFDAG00000002617	PSPC1	99	64.662	Fukomys_damarensis
ENSONIG00000012010	pspc1	99	64.137	ENSGMOG00000015074	pspc1	100	64.650	Gadus_morhua
ENSONIG00000012010	pspc1	87	67.505	ENSGALG00000017142	PSPC1	88	69.658	Gallus_gallus
ENSONIG00000012010	pspc1	75	81.378	ENSGAFG00000006327	pspc1	81	81.378	Gambusia_affinis
ENSONIG00000012010	pspc1	100	76.583	ENSGACG00000014901	pspc1	98	82.336	Gasterosteus_aculeatus
ENSONIG00000012010	pspc1	70	61.333	ENSGAGG00000017325	-	65	57.377	Gopherus_agassizii
ENSONIG00000012010	pspc1	87	67.227	ENSGAGG00000019164	PSPC1	88	69.444	Gopherus_agassizii
ENSONIG00000012010	pspc1	87	68.856	ENSGGOG00000003414	PSPC1	98	69.598	Gorilla_gorilla
ENSONIG00000012010	pspc1	99	98.259	ENSHBUG00000001139	pspc1	100	98.259	Haplochromis_burtoni
ENSONIG00000012010	pspc1	99	63.720	ENSHGLG00000018811	PSPC1	99	64.804	Heterocephalus_glaber_female
ENSONIG00000012010	pspc1	56	79.167	ENSHGLG00100007962	PSPC1	87	79.720	Heterocephalus_glaber_male
ENSONIG00000012010	pspc1	80	79.277	ENSHCOG00000013251	pspc1	99	74.833	Hippocampus_comes
ENSONIG00000012010	pspc1	99	70.621	ENSIPUG00000013192	pspc1	100	70.205	Ictalurus_punctatus
ENSONIG00000012010	pspc1	99	62.659	ENSSTOG00000026833	PSPC1	98	71.173	Ictidomys_tridecemlineatus
ENSONIG00000012010	pspc1	87	68.644	ENSJJAG00000018334	Pspc1	99	63.603	Jaculus_jaculus
ENSONIG00000012010	pspc1	99	66.027	ENSKMAG00000013525	-	98	75.493	Kryptolebias_marmoratus
ENSONIG00000012010	pspc1	99	79.026	ENSLBEG00000004474	pspc1	100	78.464	Labrus_bergylta
ENSONIG00000012010	pspc1	99	63.060	ENSLACG00000010762	PSPC1	100	65.177	Latimeria_chalumnae
ENSONIG00000012010	pspc1	99	68.797	ENSLOCG00000010832	pspc1	99	69.418	Lepisosteus_oculatus
ENSONIG00000012010	pspc1	92	66.265	ENSLAFG00000010968	PSPC1	99	64.981	Loxodonta_africana
ENSONIG00000012010	pspc1	87	68.644	ENSMFAG00000032728	PSPC1	91	79.692	Macaca_fascicularis
ENSONIG00000012010	pspc1	87	68.644	ENSMMUG00000020262	PSPC1	88	79.630	Macaca_mulatta
ENSONIG00000012010	pspc1	87	68.644	ENSMNEG00000027401	PSPC1	98	66.876	Macaca_nemestrina
ENSONIG00000012010	pspc1	75	68.293	ENSMLEG00000039043	PSPC1	94	70.050	Mandrillus_leucophaeus
ENSONIG00000012010	pspc1	99	83.239	ENSMAMG00000004333	pspc1	100	82.863	Mastacembelus_armatus
ENSONIG00000012010	pspc1	99	87.645	ENSMZEG00005005726	pspc1	100	87.332	Maylandia_zebra
ENSONIG00000012010	pspc1	76	66.508	ENSMGAG00000015134	PSPC1	100	68.932	Meleagris_gallopavo
ENSONIG00000012010	pspc1	88	61.345	ENSMAUG00000021067	Pspc1	99	59.916	Mesocricetus_auratus
ENSONIG00000012010	pspc1	87	70.339	ENSMICG00000013970	PSPC1	98	70.513	Microcebus_murinus
ENSONIG00000012010	pspc1	99	62.523	ENSMOCG00000006060	Pspc1	99	64.728	Microtus_ochrogaster
ENSONIG00000012010	pspc1	81	89.286	ENSMMOG00000004352	pspc1	71	88.889	Mola_mola
ENSONIG00000012010	pspc1	78	73.050	ENSMODG00000008029	PSPC1	78	66.331	Monodelphis_domestica
ENSONIG00000012010	pspc1	99	82.979	ENSMALG00000008914	pspc1	100	82.398	Monopterus_albus
ENSONIG00000012010	pspc1	90	65.863	MGP_CAROLIEiJ_G0019341	Pspc1	99	66.458	Mus_caroli
ENSONIG00000012010	pspc1	99	62.888	ENSMUSG00000021938	Pspc1	99	66.458	Mus_musculus
ENSONIG00000012010	pspc1	99	62.706	MGP_PahariEiJ_G0030359	Pspc1	99	66.458	Mus_pahari
ENSONIG00000012010	pspc1	99	62.888	MGP_SPRETEiJ_G0020232	Pspc1	99	66.458	Mus_spretus
ENSONIG00000012010	pspc1	87	69.068	ENSMPUG00000013347	PSPC1	99	64.534	Mustela_putorius_furo
ENSONIG00000012010	pspc1	87	68.421	ENSMLUG00000017663	PSPC1	99	64.140	Myotis_lucifugus
ENSONIG00000012010	pspc1	99	62.936	ENSNGAG00000011271	Pspc1	99	63.853	Nannospalax_galili
ENSONIG00000012010	pspc1	75	89.460	ENSNBRG00000014059	pspc1	92	89.086	Neolamprologus_brichardi
ENSONIG00000012010	pspc1	87	68.856	ENSNLEG00000001294	PSPC1	100	64.444	Nomascus_leucogenys
ENSONIG00000012010	pspc1	63	74.742	ENSMEUG00000000476	PSPC1	84	61.049	Notamacropus_eugenii
ENSONIG00000012010	pspc1	99	58.487	ENSODEG00000019012	-	99	60.149	Octodon_degus
ENSONIG00000012010	pspc1	99	55.027	ENSODEG00000007817	-	99	54.529	Octodon_degus
ENSONIG00000012010	pspc1	67	71.739	ENSOANG00000009017	-	100	69.307	Ornithorhynchus_anatinus
ENSONIG00000012010	pspc1	77	57.767	ENSOANG00000011381	-	82	58.252	Ornithorhynchus_anatinus
ENSONIG00000012010	pspc1	87	68.856	ENSOCUG00000006153	PSPC1	99	63.904	Oryctolagus_cuniculus
ENSONIG00000012010	pspc1	99	79.769	ENSORLG00000004232	-	100	78.613	Oryzias_latipes
ENSONIG00000012010	pspc1	99	79.961	ENSORLG00020000578	PSPC1	100	77.115	Oryzias_latipes_hni
ENSONIG00000012010	pspc1	99	80.154	ENSORLG00015017480	pspc1	100	78.998	Oryzias_latipes_hsok
ENSONIG00000012010	pspc1	87	69.068	ENSOGAG00000012643	PSPC1	99	65.047	Otolemur_garnettii
ENSONIG00000012010	pspc1	86	68.511	ENSOARG00000014163	PSPC1	95	67.888	Ovis_aries
ENSONIG00000012010	pspc1	87	62.712	ENSPPAG00000009836	PSPC1	92	79.630	Pan_paniscus
ENSONIG00000012010	pspc1	99	63.586	ENSPPRG00000008833	PSPC1	99	64.695	Panthera_pardus
ENSONIG00000012010	pspc1	75	68.537	ENSPTIG00000016917	PSPC1	84	70.050	Panthera_tigris_altaica
ENSONIG00000012010	pspc1	80	71.991	ENSPTRG00000005677	PSPC1	98	69.598	Pan_troglodytes
ENSONIG00000012010	pspc1	87	68.644	ENSPANG00000001992	PSPC1	89	79.692	Papio_anubis
ENSONIG00000012010	pspc1	99	67.706	ENSPKIG00000003578	pspc1	100	70.169	Paramormyrops_kingsleyae
ENSONIG00000012010	pspc1	99	61.959	ENSPSIG00000005168	PSPC1	88	69.017	Pelodiscus_sinensis
ENSONIG00000012010	pspc1	68	74.373	ENSPMGG00000015135	pspc1	98	74.157	Periophthalmus_magnuspinnatus
ENSONIG00000012010	pspc1	99	62.385	ENSPEMG00000015214	Pspc1	99	64.074	Peromyscus_maniculatus_bairdii
ENSONIG00000012010	pspc1	55	42.177	ENSPMAG00000004618	pspc1	89	42.177	Petromyzon_marinus
ENSONIG00000012010	pspc1	87	68.856	ENSPCIG00000017680	PSPC1	100	64.103	Phascolarctos_cinereus
ENSONIG00000012010	pspc1	99	81.081	ENSPFOG00000003362	pspc1	100	81.081	Poecilia_formosa
ENSONIG00000012010	pspc1	83	51.461	ENSPLAG00000004407	-	59	50.998	Poecilia_latipinna
ENSONIG00000012010	pspc1	99	81.071	ENSPLAG00000011540	pspc1	100	81.071	Poecilia_latipinna
ENSONIG00000012010	pspc1	83	52.242	ENSPMEG00000001025	-	59	51.770	Poecilia_mexicana
ENSONIG00000012010	pspc1	99	80.688	ENSPMEG00000008322	pspc1	100	80.688	Poecilia_mexicana
ENSONIG00000012010	pspc1	99	80.306	ENSPREG00000007786	pspc1	100	80.306	Poecilia_reticulata
ENSONIG00000012010	pspc1	87	68.432	ENSPPYG00000005186	PSPC1	97	66.806	Pongo_abelii
ENSONIG00000012010	pspc1	56	84.049	ENSPCAG00000008314	-	55	84.049	Procavia_capensis
ENSONIG00000012010	pspc1	87	66.525	ENSPCOG00000014364	PSPC1	99	60.846	Propithecus_coquereli
ENSONIG00000012010	pspc1	87	69.133	ENSPVAG00000005036	PSPC1	99	64.338	Pteropus_vampyrus
ENSONIG00000012010	pspc1	99	88.031	ENSPNYG00000008893	pspc1	100	87.716	Pundamilia_nyererei
ENSONIG00000012010	pspc1	99	71.023	ENSPNAG00000016511	pspc1	100	70.501	Pygocentrus_nattereri
ENSONIG00000012010	pspc1	99	62.385	ENSRNOG00000020782	Pspc1	99	66.597	Rattus_norvegicus
ENSONIG00000012010	pspc1	87	68.856	ENSRBIG00000036057	PSPC1	91	79.630	Rhinopithecus_bieti
ENSONIG00000012010	pspc1	87	68.856	ENSRROG00000036334	PSPC1	98	69.849	Rhinopithecus_roxellana
ENSONIG00000012010	pspc1	78	58.962	ENSSBOG00000028172	PSPC1	96	74.000	Saimiri_boliviensis_boliviensis
ENSONIG00000012010	pspc1	87	63.924	ENSSHAG00000004696	PSPC1	99	59.781	Sarcophilus_harrisii
ENSONIG00000012010	pspc1	87	72.557	ENSSFOG00015001395	pspc1	99	76.333	Scleropages_formosus
ENSONIG00000012010	pspc1	99	84.310	ENSSMAG00000001761	pspc1	100	84.310	Scophthalmus_maximus
ENSONIG00000012010	pspc1	99	84.259	ENSSDUG00000010651	pspc1	100	85.370	Seriola_dumerili
ENSONIG00000012010	pspc1	99	76.834	ENSSLDG00000004284	pspc1	100	76.864	Seriola_lalandi_dorsalis
ENSONIG00000012010	pspc1	79	66.047	ENSSARG00000000888	PSPC1	99	60.038	Sorex_araneus
ENSONIG00000012010	pspc1	99	51.750	ENSSPUG00000008550	PSPC1	99	54.074	Sphenodon_punctatus
ENSONIG00000012010	pspc1	86	48.478	ENSSPUG00000001136	-	52	54.701	Sphenodon_punctatus
ENSONIG00000012010	pspc1	99	87.358	ENSSPAG00000001921	pspc1	100	86.604	Stegastes_partitus
ENSONIG00000012010	pspc1	87	68.856	ENSSSCG00000009569	PSPC1	99	70.918	Sus_scrofa
ENSONIG00000012010	pspc1	87	67.437	ENSTGUG00000011295	PSPC1	99	69.658	Taeniopygia_guttata
ENSONIG00000012010	pspc1	99	77.606	ENSTRUG00000011335	pspc1	100	75.676	Takifugu_rubripes
ENSONIG00000012010	pspc1	99	75.822	ENSTNIG00000010358	pspc1	100	75.822	Tetraodon_nigroviridis
ENSONIG00000012010	pspc1	87	60.390	ENSTBEG00000002361	PSPC1	99	55.019	Tupaia_belangeri
ENSONIG00000012010	pspc1	99	63.755	ENSTTRG00000003343	PSPC1	99	64.850	Tursiops_truncatus
ENSONIG00000012010	pspc1	68	68.975	ENSUAMG00000012309	PSPC1	99	69.274	Ursus_americanus
ENSONIG00000012010	pspc1	87	68.856	ENSUMAG00000013993	PSPC1	91	79.321	Ursus_maritimus
ENSONIG00000012010	pspc1	75	68.293	ENSVPAG00000010029	PSPC1	100	69.802	Vicugna_pacos
ENSONIG00000012010	pspc1	87	69.068	ENSVVUG00000006414	PSPC1	99	70.455	Vulpes_vulpes
ENSONIG00000012010	pspc1	75	82.398	ENSXCOG00000017438	pspc1	93	82.398	Xiphophorus_couchianus
ENSONIG00000012010	pspc1	75	82.653	ENSXMAG00000007929	pspc1	93	82.653	Xiphophorus_maculatus