EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000012508 (Gene tree)
Gene ID: 100711759
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 8366 bases
Position: chrGL831204.1:886923-895288
Accession: 100711759
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000015747	RRM_1	PF00076.22	1.4e-57	1	4
ENSONIP00000015747	RRM_1	PF00076.22	1.4e-57	2	4
ENSONIP00000015747	RRM_1	PF00076.22	1.4e-57	3	4
ENSONIP00000015747	RRM_1	PF00076.22	1.4e-57	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000015762	-	3737	-	ENSONIP00000015747	703 (aa)	XP_005454005	I3K3Q2

Gene Model

Click here to download ENSONIG00000012508's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000012508's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000012508	ncl	52	38.919	ENSONIG00000010631	-	95	39.024

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000012508	ncl	64	80.000	ENSAPOG00000023888	ncl	64	79.825	Acanthochromis_polyacanthus
ENSONIG00000012508	ncl	57	42.857	ENSAPOG00000014534	-	67	43.081	Acanthochromis_polyacanthus
ENSONIG00000012508	ncl	70	91.057	ENSACIG00000013234	ncl	62	90.515	Amphilophus_citrinellus
ENSONIG00000012508	ncl	70	39.300	ENSAOCG00000014792	-	61	42.746	Amphiprion_ocellaris
ENSONIG00000012508	ncl	59	81.043	ENSAOCG00000003133	ncl	52	83.065	Amphiprion_ocellaris
ENSONIG00000012508	ncl	59	81.235	ENSAPEG00000002769	ncl	59	81.235	Amphiprion_percula
ENSONIG00000012508	ncl	70	39.105	ENSAPEG00000013612	-	60	42.487	Amphiprion_percula
ENSONIG00000012508	ncl	65	79.266	ENSATEG00000013343	ncl	65	77.851	Anabas_testudineus
ENSONIG00000012508	ncl	60	46.085	ENSATEG00000019862	-	85	45.763	Anabas_testudineus
ENSONIG00000012508	ncl	83	51.360	ENSACAG00000001006	-	52	62.895	Anolis_carolinensis
ENSONIG00000012508	ncl	52	95.050	ENSACLG00000026031	ncl	82	95.050	Astatotilapia_calliptera
ENSONIG00000012508	ncl	67	62.185	ENSAMXG00000001647	ncl	83	69.000	Astyanax_mexicanus
ENSONIG00000012508	ncl	89	49.849	ENSCPBG00000016444	-	56	62.797	Chrysemys_picta_bellii
ENSONIG00000012508	ncl	53	75.789	ENSCSEG00000015089	ncl	54	75.532	Cynoglossus_semilaevis
ENSONIG00000012508	ncl	52	77.657	ENSCVAG00000012600	ncl	54	77.568	Cyprinodon_variegatus
ENSONIG00000012508	ncl	59	72.877	ENSDARG00000002710	ncl	79	73.139	Danio_rerio
ENSONIG00000012508	ncl	67	44.898	ENSDNOG00000031611	-	66	45.553	Dasypus_novemcinctus
ENSONIG00000012508	ncl	51	50.000	ENSDNOG00000040257	-	61	49.180	Dasypus_novemcinctus
ENSONIG00000012508	ncl	79	48.884	ENSEBUG00000016173	ncl	56	43.287	Eptatretus_burgeri
ENSONIG00000012508	ncl	60	48.131	ENSELUG00000022826	-	81	50.532	Esox_lucius
ENSONIG00000012508	ncl	67	77.027	ENSFHEG00000018000	ncl	60	76.081	Fundulus_heteroclitus
ENSONIG00000012508	ncl	54	66.667	ENSGMOG00000001341	ncl	59	66.310	Gadus_morhua
ENSONIG00000012508	ncl	52	59.947	ENSGALG00000032930	NCL	55	59.424	Gallus_gallus
ENSONIG00000012508	ncl	89	67.213	ENSGAFG00000015375	ncl	57	76.247	Gambusia_affinis
ENSONIG00000012508	ncl	89	67.975	ENSGACG00000008970	ncl	60	77.419	Gasterosteus_aculeatus
ENSONIG00000012508	ncl	89	48.795	ENSGAGG00000013330	-	56	62.005	Gopherus_agassizii
ENSONIG00000012508	ncl	100	98.159	ENSHBUG00000006869	ncl	100	98.159	Haplochromis_burtoni
ENSONIG00000012508	ncl	69	72.379	ENSHCOG00000010234	ncl	52	76.676	Hippocampus_comes
ENSONIG00000012508	ncl	52	70.820	ENSIPUG00000024556	ncl	81	71.148	Ictalurus_punctatus
ENSONIG00000012508	ncl	59	77.541	ENSKMAG00000008111	ncl	53	79.459	Kryptolebias_marmoratus
ENSONIG00000012508	ncl	52	43.008	ENSLBEG00000014278	-	81	43.017	Labrus_bergylta
ENSONIG00000012508	ncl	59	80.048	ENSLBEG00000019073	ncl	56	81.183	Labrus_bergylta
ENSONIG00000012508	ncl	55	43.392	ENSLBEG00000007915	-	65	43.194	Labrus_bergylta
ENSONIG00000012508	ncl	59	63.270	ENSLACG00000009328	ncl	57	64.628	Latimeria_chalumnae
ENSONIG00000012508	ncl	60	50.465	ENSLACG00000022167	-	79	52.547	Latimeria_chalumnae
ENSONIG00000012508	ncl	50	66.480	ENSLOCG00000004828	ncl	70	64.390	Lepisosteus_oculatus
ENSONIG00000012508	ncl	59	41.324	ENSMAMG00000003479	-	69	42.147	Mastacembelus_armatus
ENSONIG00000012508	ncl	100	96.893	ENSMZEG00005017438	ncl	100	96.893	Maylandia_zebra
ENSONIG00000012508	ncl	52	59.350	ENSMGAG00000008147	-	86	59.030	Meleagris_gallopavo
ENSONIG00000012508	ncl	56	78.338	ENSMMOG00000008553	ncl	83	82.051	Mola_mola
ENSONIG00000012508	ncl	52	57.520	ENSMODG00000002470	-	54	56.443	Monodelphis_domestica
ENSONIG00000012508	ncl	93	74.434	ENSMALG00000014827	ncl	51	79.885	Monopterus_albus
ENSONIG00000012508	ncl	60	100.000	ENSNBRG00000000146	-	99	100.000	Neolamprologus_brichardi
ENSONIG00000012508	ncl	62	100.000	ENSNBRG00000001232	ncl	100	100.000	Neolamprologus_brichardi
ENSONIG00000012508	ncl	53	59.481	ENSOANG00000008732	-	61	60.000	Ornithorhynchus_anatinus
ENSONIG00000012508	ncl	57	39.078	ENSORLG00000004645	-	83	40.526	Oryzias_latipes
ENSONIG00000012508	ncl	59	76.247	ENSORLG00020017943	ncl	60	70.023	Oryzias_latipes_hni
ENSONIG00000012508	ncl	58	39.423	ENSORLG00020003497	-	74	40.526	Oryzias_latipes_hni
ENSONIG00000012508	ncl	57	39.855	ENSORLG00015006613	-	77	41.053	Oryzias_latipes_hsok
ENSONIG00000012508	ncl	85	66.309	ENSORLG00015013815	ncl	85	77.451	Oryzias_latipes_hsok
ENSONIG00000012508	ncl	55	41.000	ENSOMEG00000015864	-	82	41.316	Oryzias_melastigma
ENSONIG00000012508	ncl	60	71.934	ENSPKIG00000002604	ncl	53	73.190	Paramormyrops_kingsleyae
ENSONIG00000012508	ncl	54	60.000	ENSPSIG00000002361	-	53	60.313	Pelodiscus_sinensis
ENSONIG00000012508	ncl	52	56.728	ENSPCIG00000003293	-	54	56.218	Phascolarctos_cinereus
ENSONIG00000012508	ncl	65	76.293	ENSPFOG00000024205	ncl	50	78.378	Poecilia_formosa
ENSONIG00000012508	ncl	65	74.946	ENSPLAG00000024026	ncl	57	76.485	Poecilia_latipinna
ENSONIG00000012508	ncl	65	75.594	ENSPMEG00000006000	ncl	64	77.197	Poecilia_mexicana
ENSONIG00000012508	ncl	100	97.163	ENSPNYG00000020494	ncl	100	97.163	Pundamilia_nyererei
ENSONIG00000012508	ncl	59	68.246	ENSPNAG00000006192	ncl	56	68.704	Pygocentrus_nattereri
ENSONIG00000012508	ncl	52	52.957	ENSSHAG00000002702	-	62	50.363	Sarcophilus_harrisii
ENSONIG00000012508	ncl	63	68.527	ENSSFOG00015008583	ncl	56	74.531	Scleropages_formosus
ENSONIG00000012508	ncl	58	43.714	ENSSFOG00015013153	-	75	45.875	Scleropages_formosus
ENSONIG00000012508	ncl	56	44.828	ENSSMAG00000007582	-	61	45.910	Scophthalmus_maximus
ENSONIG00000012508	ncl	59	77.830	ENSSMAG00000021241	ncl	53	79.200	Scophthalmus_maximus
ENSONIG00000012508	ncl	65	41.053	ENSSDUG00000010922	-	70	44.357	Seriola_dumerili
ENSONIG00000012508	ncl	76	76.067	ENSSDUG00000006128	ncl	85	81.452	Seriola_dumerili
ENSONIG00000012508	ncl	63	42.857	ENSSLDG00000015784	-	71	43.269	Seriola_lalandi_dorsalis
ENSONIG00000012508	ncl	69	78.029	ENSSLDG00000002012	ncl	53	81.183	Seriola_lalandi_dorsalis
ENSONIG00000012508	ncl	60	57.298	ENSSPUG00000008244	-	62	59.024	Sphenodon_punctatus
ENSONIG00000012508	ncl	51	80.142	ENSSPAG00000002637	ncl	79	80.142	Stegastes_partitus
ENSONIG00000012508	ncl	55	44.363	ENSSPAG00000001859	-	67	43.032	Stegastes_partitus
ENSONIG00000012508	ncl	59	71.599	ENSTNIG00000012186	ncl	69	71.021	Tetraodon_nigroviridis
ENSONIG00000012508	ncl	52	61.111	ENSXETG00000009517	ncl	54	61.376	Xenopus_tropicalis
ENSONIG00000012508	ncl	54	47.785	ENSXCOG00000003524	ncl	85	61.702	Xiphophorus_couchianus
ENSONIG00000012508	ncl	52	40.318	ENSXCOG00000007369	-	89	40.053	Xiphophorus_couchianus
ENSONIG00000012508	ncl	59	77.488	ENSXMAG00000005914	ncl	51	77.568	Xiphophorus_maculatus