EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000012729 (Gene tree)
Gene ID: 100695574
Gene Symbol: -
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 11320 bases
Position: chrGL831204.1:3138981-3150300
Accession: 100695574
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000016019	UPF1_Zn_bind	PF09416.10	7.9e-75	1	1
ENSONIP00000016019	ResIII	PF04851.15	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000016034	-	3676	-	ENSONIP00000016019	1101 (aa)	XP_003449077	I3K4H4

Gene Model

Click here to download ENSONIG00000012729's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000012729's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000012729	-	100	92.363	ENSONIG00000010452	upf1	100	92.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000012729	-	100	92.328	ENSG00000005007	UPF1	100	92.417	Homo_sapiens
ENSONIG00000012729	-	100	99.002	ENSAPOG00000010916	-	100	99.002	Acanthochromis_polyacanthus
ENSONIG00000012729	-	100	93.128	ENSAPOG00000023773	upf1	100	93.128	Acanthochromis_polyacanthus
ENSONIG00000012729	-	100	91.918	ENSAMEG00000011474	UPF1	100	92.007	Ailuropoda_melanoleuca
ENSONIG00000012729	-	100	93.279	ENSACIG00000019949	upf1	100	93.279	Amphilophus_citrinellus
ENSONIG00000012729	-	93	98.442	ENSACIG00000010985	-	100	98.442	Amphilophus_citrinellus
ENSONIG00000012729	-	100	92.643	ENSAOCG00000018519	upf1	100	92.921	Amphiprion_ocellaris
ENSONIG00000012729	-	100	99.093	ENSAOCG00000006352	-	100	99.093	Amphiprion_ocellaris
ENSONIG00000012729	-	100	92.643	ENSAPEG00000016344	upf1	100	92.921	Amphiprion_percula
ENSONIG00000012729	-	100	99.002	ENSAPEG00000006292	-	100	99.002	Amphiprion_percula
ENSONIG00000012729	-	100	98.820	ENSATEG00000016606	-	100	98.820	Anabas_testudineus
ENSONIG00000012729	-	100	91.592	ENSATEG00000017867	upf1	100	91.897	Anabas_testudineus
ENSONIG00000012729	-	95	93.934	ENSAPLG00000009175	UPF1	100	93.934	Anas_platyrhynchos
ENSONIG00000012729	-	95	92.490	ENSANAG00000024107	UPF1	95	92.490	Aotus_nancymaae
ENSONIG00000012729	-	100	99.728	ENSACLG00000022630	-	100	99.728	Astatotilapia_calliptera
ENSONIG00000012729	-	100	93.188	ENSACLG00000007181	upf1	100	93.188	Astatotilapia_calliptera
ENSONIG00000012729	-	100	94.828	ENSAMXG00000042187	upf1	100	94.374	Astyanax_mexicanus
ENSONIG00000012729	-	100	91.933	ENSBTAG00000020922	UPF1	100	92.021	Bos_taurus
ENSONIG00000012729	-	97	49.354	WBGene00004880	smg-2	99	49.262	Caenorhabditis_elegans
ENSONIG00000012729	-	100	91.600	ENSCJAG00000019627	UPF1	100	91.689	Callithrix_jacchus
ENSONIG00000012729	-	100	91.689	ENSCAFG00000014578	UPF1	100	91.777	Canis_familiaris
ENSONIG00000012729	-	100	92.417	ENSCAFG00020012347	UPF1	100	92.507	Canis_lupus_dingo
ENSONIG00000012729	-	100	92.665	ENSCHIG00000011018	UPF1	100	92.755	Capra_hircus
ENSONIG00000012729	-	95	93.631	ENSTSYG00000008877	UPF1	98	93.631	Carlito_syrichta
ENSONIG00000012729	-	96	92.857	ENSCAPG00000005758	UPF1	95	93.536	Cavia_aperea
ENSONIG00000012729	-	100	92.716	ENSCPOG00000025463	UPF1	100	92.716	Cavia_porcellus
ENSONIG00000012729	-	100	92.328	ENSCCAG00000032175	UPF1	100	92.417	Cebus_capucinus
ENSONIG00000012729	-	94	94.078	ENSCATG00000040306	UPF1	97	94.078	Cercocebus_atys
ENSONIG00000012729	-	95	93.821	ENSCLAG00000004037	UPF1	99	93.821	Chinchilla_lanigera
ENSONIG00000012729	-	100	92.328	ENSCSAG00000005276	UPF1	100	92.417	Chlorocebus_sabaeus
ENSONIG00000012729	-	100	92.466	ENSCPBG00000012513	UPF1	100	92.466	Chrysemys_picta_bellii
ENSONIG00000012729	-	77	79.532	ENSCING00000021399	-	99	78.571	Ciona_intestinalis
ENSONIG00000012729	-	99	73.136	ENSCSAVG00000006533	-	99	73.405	Ciona_savignyi
ENSONIG00000012729	-	95	93.821	ENSCANG00000029819	UPF1	97	93.821	Colobus_angolensis_palliatus
ENSONIG00000012729	-	100	92.204	ENSCGRG00001021067	Upf1	100	92.294	Cricetulus_griseus_chok1gshd
ENSONIG00000012729	-	95	93.251	ENSCGRG00000013480	Upf1	98	93.251	Cricetulus_griseus_crigri
ENSONIG00000012729	-	100	97.913	ENSCSEG00000016159	-	100	97.913	Cynoglossus_semilaevis
ENSONIG00000012729	-	100	88.033	ENSCSEG00000017239	upf1	100	87.387	Cynoglossus_semilaevis
ENSONIG00000012729	-	100	98.185	ENSCVAG00000010561	upf1	100	98.185	Cyprinodon_variegatus
ENSONIG00000012729	-	100	94.192	ENSDARG00000016302	upf1	100	94.465	Danio_rerio
ENSONIG00000012729	-	95	91.358	ENSDORG00000009984	Upf1	95	91.358	Dipodomys_ordii
ENSONIG00000012729	-	85	72.187	FBgn0030354	Upf1	82	70.667	Drosophila_melanogaster
ENSONIG00000012729	-	54	86.634	ENSEBUG00000010069	upf1	96	86.634	Eptatretus_burgeri
ENSONIG00000012729	-	100	92.576	ENSEASG00005006549	UPF1	100	92.665	Equus_asinus_asinus
ENSONIG00000012729	-	100	92.576	ENSECAG00000010639	UPF1	100	92.665	Equus_caballus
ENSONIG00000012729	-	100	95.217	ENSELUG00000012916	-	100	94.495	Esox_lucius
ENSONIG00000012729	-	100	92.502	ENSELUG00000020917	upf1	100	92.141	Esox_lucius
ENSONIG00000012729	-	100	91.600	ENSFCAG00000009757	UPF1	100	91.689	Felis_catus
ENSONIG00000012729	-	95	94.280	ENSFALG00000009312	UPF1	96	94.280	Ficedula_albicollis
ENSONIG00000012729	-	95	93.726	ENSFDAG00000014816	UPF1	99	93.726	Fukomys_damarensis
ENSONIG00000012729	-	100	89.436	ENSFHEG00000006428	upf1	100	89.177	Fundulus_heteroclitus
ENSONIG00000012729	-	86	98.367	ENSFHEG00000016276	-	96	98.367	Fundulus_heteroclitus
ENSONIG00000012729	-	100	94.519	ENSGMOG00000007541	upf1	100	94.519	Gadus_morhua
ENSONIG00000012729	-	100	92.404	ENSGALG00000003220	UPF1	100	92.404	Gallus_gallus
ENSONIG00000012729	-	100	98.004	ENSGAFG00000004831	upf1	100	98.004	Gambusia_affinis
ENSONIG00000012729	-	63	94.532	ENSGAFG00000015443	-	85	94.532	Gambusia_affinis
ENSONIG00000012729	-	100	92.973	ENSGAGG00000022217	UPF1	100	93.063	Gopherus_agassizii
ENSONIG00000012729	-	95	94.626	ENSGGOG00000002608	UPF1	99	94.626	Gorilla_gorilla
ENSONIG00000012729	-	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSONIG00000012729	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSONIG00000012729	-	100	91.335	ENSHGLG00000010900	UPF1	100	91.424	Heterocephalus_glaber_female
ENSONIG00000012729	-	95	92.015	ENSHGLG00100005904	UPF1	96	92.015	Heterocephalus_glaber_male
ENSONIG00000012729	-	100	98.005	ENSHCOG00000008918	upf1	100	98.005	Hippocampus_comes
ENSONIG00000012729	-	100	94.828	ENSIPUG00000005108	UPF1	100	94.374	Ictalurus_punctatus
ENSONIG00000012729	-	100	92.328	ENSSTOG00000009196	UPF1	100	92.417	Ictidomys_tridecemlineatus
ENSONIG00000012729	-	100	91.370	ENSJJAG00000023151	Upf1	100	91.459	Jaculus_jaculus
ENSONIG00000012729	-	100	98.548	ENSKMAG00000004962	upf1	100	98.548	Kryptolebias_marmoratus
ENSONIG00000012729	-	100	98.367	ENSLBEG00000027848	-	100	98.367	Labrus_bergylta
ENSONIG00000012729	-	100	91.667	ENSLBEG00000014862	upf1	100	92.115	Labrus_bergylta
ENSONIG00000012729	-	63	94.261	ENSLACG00000008482	UPF1	100	94.261	Latimeria_chalumnae
ENSONIG00000012729	-	100	95.640	ENSLOCG00000002072	upf1	100	95.640	Lepisosteus_oculatus
ENSONIG00000012729	-	100	91.231	ENSLAFG00000014963	UPF1	100	91.320	Loxodonta_africana
ENSONIG00000012729	-	100	92.253	ENSMFAG00000037748	UPF1	100	92.342	Macaca_fascicularis
ENSONIG00000012729	-	100	92.007	ENSMMUG00000023286	UPF1	100	92.096	Macaca_mulatta
ENSONIG00000012729	-	100	92.253	ENSMNEG00000000046	UPF1	100	92.342	Macaca_nemestrina
ENSONIG00000012729	-	95	93.821	ENSMLEG00000028404	UPF1	99	93.821	Mandrillus_leucophaeus
ENSONIG00000012729	-	100	92.039	ENSMAMG00000006229	upf1	100	92.576	Mastacembelus_armatus
ENSONIG00000012729	-	100	98.457	ENSMAMG00000006231	-	100	98.457	Mastacembelus_armatus
ENSONIG00000012729	-	100	99.728	ENSMZEG00005016386	-	100	99.728	Maylandia_zebra
ENSONIG00000012729	-	100	92.183	ENSMZEG00005003489	upf1	100	92.543	Maylandia_zebra
ENSONIG00000012729	-	95	93.447	ENSMGAG00000004745	UPF1	100	93.447	Meleagris_gallopavo
ENSONIG00000012729	-	95	93.251	ENSMAUG00000011398	Upf1	95	93.251	Mesocricetus_auratus
ENSONIG00000012729	-	100	92.239	ENSMICG00000001659	UPF1	100	92.328	Microcebus_murinus
ENSONIG00000012729	-	100	91.474	ENSMOCG00000005699	Upf1	100	91.652	Microtus_ochrogaster
ENSONIG00000012729	-	95	95.985	ENSMMOG00000007537	-	99	95.985	Mola_mola
ENSONIG00000012729	-	100	92.371	ENSMMOG00000007881	upf1	100	92.650	Mola_mola
ENSONIG00000012729	-	100	91.270	ENSMODG00000003689	UPF1	100	91.446	Monodelphis_domestica
ENSONIG00000012729	-	100	92.189	ENSMALG00000000144	upf1	100	92.301	Monopterus_albus
ENSONIG00000012729	-	100	96.926	ENSMALG00000018100	-	100	96.926	Monopterus_albus
ENSONIG00000012729	-	100	92.115	MGP_CAROLIEiJ_G0031142	Upf1	100	92.204	Mus_caroli
ENSONIG00000012729	-	100	92.115	ENSMUSG00000058301	Upf1	100	92.204	Mus_musculus
ENSONIG00000012729	-	100	92.115	MGP_PahariEiJ_G0021607	Upf1	100	92.204	Mus_pahari
ENSONIG00000012729	-	100	92.115	MGP_SPRETEiJ_G0032260	Upf1	100	92.204	Mus_spretus
ENSONIG00000012729	-	100	92.417	ENSMPUG00000015516	UPF1	100	92.507	Mustela_putorius_furo
ENSONIG00000012729	-	99	92.211	ENSMLUG00000012122	UPF1	99	92.301	Myotis_lucifugus
ENSONIG00000012729	-	100	91.054	ENSNGAG00000024107	Upf1	100	91.143	Nannospalax_galili
ENSONIG00000012729	-	100	96.060	ENSNBRG00000022069	-	100	98.447	Neolamprologus_brichardi
ENSONIG00000012729	-	100	91.379	ENSNBRG00000000670	upf1	100	91.379	Neolamprologus_brichardi
ENSONIG00000012729	-	95	88.023	ENSNLEG00000006062	UPF1	99	88.023	Nomascus_leucogenys
ENSONIG00000012729	-	83	88.454	ENSMEUG00000014146	-	83	88.454	Notamacropus_eugenii
ENSONIG00000012729	-	95	87.620	ENSOPRG00000014018	UPF1	99	87.044	Ochotona_princeps
ENSONIG00000012729	-	100	92.709	ENSODEG00000012426	UPF1	100	92.709	Octodon_degus
ENSONIG00000012729	-	100	91.408	ENSOANG00000004568	UPF1	100	91.320	Ornithorhynchus_anatinus
ENSONIG00000012729	-	100	97.278	ENSORLG00000008453	upf1	100	97.278	Oryzias_latipes
ENSONIG00000012729	-	100	97.189	ENSORLG00020014758	upf1	100	97.189	Oryzias_latipes_hni
ENSONIG00000012729	-	100	97.189	ENSORLG00015010165	upf1	100	97.189	Oryzias_latipes_hsok
ENSONIG00000012729	-	100	97.550	ENSOMEG00000003665	upf1	100	97.550	Oryzias_melastigma
ENSONIG00000012729	-	100	92.417	ENSOGAG00000012866	UPF1	100	92.507	Otolemur_garnettii
ENSONIG00000012729	-	96	90.892	ENSOARG00000010739	UPF1	100	90.892	Ovis_aries
ENSONIG00000012729	-	95	93.821	ENSPPAG00000043884	UPF1	96	93.821	Pan_paniscus
ENSONIG00000012729	-	100	91.600	ENSPPRG00000023470	UPF1	100	91.689	Panthera_pardus
ENSONIG00000012729	-	95	92.529	ENSPTIG00000010159	UPF1	99	92.529	Panthera_tigris_altaica
ENSONIG00000012729	-	100	92.253	ENSPTRG00000010721	UPF1	100	92.342	Pan_troglodytes
ENSONIG00000012729	-	100	92.253	ENSPANG00000008847	UPF1	100	92.342	Papio_anubis
ENSONIG00000012729	-	91	95.333	ENSPKIG00000006069	upf1	95	96.270	Paramormyrops_kingsleyae
ENSONIG00000012729	-	70	93.342	ENSPSIG00000009491	UPF1	100	93.342	Pelodiscus_sinensis
ENSONIG00000012729	-	100	91.222	ENSPMGG00000017327	upf1	100	91.312	Periophthalmus_magnuspinnatus
ENSONIG00000012729	-	100	91.474	ENSPEMG00000001085	Upf1	100	91.563	Peromyscus_maniculatus_bairdii
ENSONIG00000012729	-	100	87.928	ENSPMAG00000001206	upf1	100	87.928	Petromyzon_marinus
ENSONIG00000012729	-	100	92.500	ENSPCIG00000006156	UPF1	100	92.589	Phascolarctos_cinereus
ENSONIG00000012729	-	100	98.094	ENSPLAG00000016232	-	100	98.094	Poecilia_latipinna
ENSONIG00000012729	-	100	91.359	ENSPLAG00000018155	-	100	90.673	Poecilia_latipinna
ENSONIG00000012729	-	100	98.185	ENSPMEG00000016319	-	100	98.185	Poecilia_mexicana
ENSONIG00000012729	-	100	91.931	ENSPMEG00000011443	-	100	91.553	Poecilia_mexicana
ENSONIG00000012729	-	100	91.734	ENSPREG00000009940	upf1	100	91.145	Poecilia_reticulata
ENSONIG00000012729	-	100	97.913	ENSPREG00000011247	-	100	97.913	Poecilia_reticulata
ENSONIG00000012729	-	100	86.826	ENSPPYG00000009752	UPF1	100	86.472	Pongo_abelii
ENSONIG00000012729	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSONIG00000012729	-	100	92.089	ENSPCOG00000023813	UPF1	100	92.178	Propithecus_coquereli
ENSONIG00000012729	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSONIG00000012729	-	100	92.183	ENSPNYG00000003694	upf1	100	92.543	Pundamilia_nyererei
ENSONIG00000012729	-	100	99.637	ENSPNYG00000016731	-	100	99.637	Pundamilia_nyererei
ENSONIG00000012729	-	100	94.374	ENSPNAG00000025614	upf1	100	93.920	Pygocentrus_nattereri
ENSONIG00000012729	-	100	92.115	ENSRNOG00000020134	Upf1	100	92.204	Rattus_norvegicus
ENSONIG00000012729	-	95	91.445	ENSRBIG00000013894	UPF1	98	94.426	Rhinopithecus_bieti
ENSONIG00000012729	-	95	93.821	ENSRROG00000040935	UPF1	98	94.426	Rhinopithecus_roxellana
ENSONIG00000012729	-	72	57.947	YMR080C	NAM7	82	57.947	Saccharomyces_cerevisiae
ENSONIG00000012729	-	94	94.078	ENSSBOG00000023632	UPF1	96	94.078	Saimiri_boliviensis_boliviensis
ENSONIG00000012729	-	95	93.643	ENSSHAG00000010499	UPF1	100	93.643	Sarcophilus_harrisii
ENSONIG00000012729	-	100	95.459	ENSSFOG00015021095	upf1	100	95.459	Scleropages_formosus
ENSONIG00000012729	-	100	91.039	ENSSMAG00000005055	upf1	100	91.846	Scophthalmus_maximus
ENSONIG00000012729	-	100	98.820	ENSSMAG00000021018	-	100	98.820	Scophthalmus_maximus
ENSONIG00000012729	-	100	91.860	ENSSDUG00000013320	upf1	100	92.487	Seriola_dumerili
ENSONIG00000012729	-	100	99.093	ENSSDUG00000009629	-	100	99.093	Seriola_dumerili
ENSONIG00000012729	-	100	99.093	ENSSLDG00000006878	-	100	99.093	Seriola_lalandi_dorsalis
ENSONIG00000012729	-	100	92.690	ENSSLDG00000020868	upf1	100	93.141	Seriola_lalandi_dorsalis
ENSONIG00000012729	-	100	92.806	ENSSPUG00000010538	UPF1	100	92.896	Sphenodon_punctatus
ENSONIG00000012729	-	100	90.851	ENSSPAG00000000003	upf1	100	90.736	Stegastes_partitus
ENSONIG00000012729	-	100	98.730	ENSSPAG00000011521	-	100	98.730	Stegastes_partitus
ENSONIG00000012729	-	100	92.576	ENSSSCG00000039301	UPF1	99	94.540	Sus_scrofa
ENSONIG00000012729	-	82	86.809	ENSTGUG00000001057	UPF1	100	91.124	Taeniopygia_guttata
ENSONIG00000012729	-	100	96.915	ENSTRUG00000005131	-	100	96.915	Takifugu_rubripes
ENSONIG00000012729	-	100	92.468	ENSTRUG00000000150	upf1	100	92.468	Takifugu_rubripes
ENSONIG00000012729	-	100	88.998	ENSTTRG00000011544	UPF1	100	88.998	Tursiops_truncatus
ENSONIG00000012729	-	100	92.328	ENSUAMG00000007093	UPF1	100	92.417	Ursus_americanus
ENSONIG00000012729	-	95	94.540	ENSUMAG00000006652	UPF1	99	95.031	Ursus_maritimus
ENSONIG00000012729	-	100	92.417	ENSVVUG00000007797	UPF1	100	92.507	Vulpes_vulpes
ENSONIG00000012729	-	100	79.471	ENSXETG00000013602	upf1	100	79.471	Xenopus_tropicalis
ENSONIG00000012729	-	97	91.541	ENSXCOG00000015275	-	96	91.447	Xiphophorus_couchianus
ENSONIG00000012729	-	94	97.967	ENSXCOG00000005764	-	100	97.967	Xiphophorus_couchianus
ENSONIG00000012729	-	100	98.004	ENSXMAG00000002540	-	100	98.004	Xiphophorus_maculatus
ENSONIG00000012729	-	100	91.735	ENSXMAG00000001703	-	100	91.644	Xiphophorus_maculatus