EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000013583 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 12533 bases
Position: chrGL831186.1:1087258-1099790
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000017081	zf-C2H2	PF00096.26	4.3e-17	1	3
ENSONIP00000017081	zf-C2H2	PF00096.26	4.3e-17	2	3
ENSONIP00000017081	zf-C2H2	PF00096.26	4.3e-17	3	3
ENSONIP00000017081	zf-met	PF12874.7	6.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000017096	-	5055	-	ENSONIP00000017081	702 (aa)	-	I3K7I6

Gene Model

Click here to download ENSONIG00000013583's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000013583's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000013583	prdm1b	69	59.509	ENSONIG00000014709	-	72	59.509

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000013583	prdm1b	66	53.169	ENSAPOG00000014135	-	61	53.169	Acanthochromis_polyacanthus
ENSONIG00000013583	prdm1b	63	64.894	ENSAPOG00000022084	prdm1b	99	65.532	Acanthochromis_polyacanthus
ENSONIG00000013583	prdm1b	74	89.157	ENSACIG00000014426	prdm1b	89	89.157	Amphilophus_citrinellus
ENSONIG00000013583	prdm1b	59	59.509	ENSACIG00000009747	-	53	59.509	Amphilophus_citrinellus
ENSONIG00000013583	prdm1b	77	86.905	ENSAOCG00000002230	prdm1b	94	86.905	Amphiprion_ocellaris
ENSONIG00000013583	prdm1b	90	89.017	ENSAPEG00000019826	prdm1b	92	92.105	Amphiprion_percula
ENSONIG00000013583	prdm1b	60	57.927	ENSATEG00000021017	prdm1a	57	57.778	Anabas_testudineus
ENSONIG00000013583	prdm1b	78	92.857	ENSATEG00000006924	prdm1b	91	92.857	Anabas_testudineus
ENSONIG00000013583	prdm1b	58	57.669	ENSATEG00000014034	-	53	57.669	Anabas_testudineus
ENSONIG00000013583	prdm1b	77	91.966	ENSACLG00000005487	prdm1b	88	91.966	Astatotilapia_calliptera
ENSONIG00000013583	prdm1b	72	54.802	ENSCSEG00000009707	prdm1a	74	54.802	Cynoglossus_semilaevis
ENSONIG00000013583	prdm1b	60	58.333	ENSCVAG00000019081	prdm1a	72	56.571	Cyprinodon_variegatus
ENSONIG00000013583	prdm1b	88	86.127	ENSCVAG00000016746	prdm1b	87	94.444	Cyprinodon_variegatus
ENSONIG00000013583	prdm1b	79	80.682	ENSFHEG00000019848	prdm1b	90	80.682	Fundulus_heteroclitus
ENSONIG00000013583	prdm1b	86	69.524	ENSGAFG00000016191	prdm1b	79	86.441	Gambusia_affinis
ENSONIG00000013583	prdm1b	100	66.893	ENSGACG00000002716	prdm1b	99	68.114	Gasterosteus_aculeatus
ENSONIG00000013583	prdm1b	64	91.966	ENSHBUG00000001475	prdm1b	79	91.966	Haplochromis_burtoni
ENSONIG00000013583	prdm1b	86	59.464	ENSHCOG00000003617	prdm1b	90	59.306	Hippocampus_comes
ENSONIG00000013583	prdm1b	98	54.369	ENSIPUG00000013740	prdm1b	93	54.495	Ictalurus_punctatus
ENSONIG00000013583	prdm1b	86	63.391	ENSKMAG00000011218	prdm1b	89	63.391	Kryptolebias_marmoratus
ENSONIG00000013583	prdm1b	60	57.738	ENSKMAG00000017597	prdm1a	59	57.738	Kryptolebias_marmoratus
ENSONIG00000013583	prdm1b	68	58.282	ENSKMAG00000016247	-	68	58.282	Kryptolebias_marmoratus
ENSONIG00000013583	prdm1b	100	71.214	ENSLBEG00000020955	prdm1b	92	69.631	Labrus_bergylta
ENSONIG00000013583	prdm1b	83	73.810	ENSLOCG00000004978	prdm1b	82	73.810	Lepisosteus_oculatus
ENSONIG00000013583	prdm1b	77	89.641	ENSMZEG00005026361	prdm1b	73	89.641	Maylandia_zebra
ENSONIG00000013583	prdm1b	86	64.640	ENSMMOG00000013458	prdm1b	92	87.952	Mola_mola
ENSONIG00000013583	prdm1b	61	54.348	ENSMALG00000000462	-	57	54.348	Monopterus_albus
ENSONIG00000013583	prdm1b	77	86.047	ENSMALG00000011410	prdm1b	93	63.407	Monopterus_albus
ENSONIG00000013583	prdm1b	86	64.490	ENSORLG00000010025	prdm1b	92	64.331	Oryzias_latipes
ENSONIG00000013583	prdm1b	86	64.490	ENSORLG00015009022	prdm1b	91	64.490	Oryzias_latipes_hsok
ENSONIG00000013583	prdm1b	71	74.214	ENSPKIG00000022335	prdm1b	74	74.214	Paramormyrops_kingsleyae
ENSONIG00000013583	prdm1b	96	66.810	ENSPFOG00000003103	prdm1b	100	66.667	Poecilia_formosa
ENSONIG00000013583	prdm1b	83	86.747	ENSPLAG00000018491	prdm1b	90	67.666	Poecilia_latipinna
ENSONIG00000013583	prdm1b	86	66.667	ENSPMEG00000007869	prdm1b	90	87.342	Poecilia_mexicana
ENSONIG00000013583	prdm1b	83	89.157	ENSPREG00000011327	prdm1b	78	87.151	Poecilia_reticulata
ENSONIG00000013583	prdm1b	100	43.043	ENSPVAG00000011732	PRDM1	93	43.043	Pteropus_vampyrus
ENSONIG00000013583	prdm1b	72	59.394	ENSPNAG00000028442	prdm1a	67	59.394	Pygocentrus_nattereri
ENSONIG00000013583	prdm1b	84	71.739	ENSSFOG00015021896	prdm1b	89	71.739	Scleropages_formosus
ENSONIG00000013583	prdm1b	92	88.136	ENSSMAG00000020467	prdm1b	90	91.525	Scophthalmus_maximus
ENSONIG00000013583	prdm1b	57	58.282	ENSSMAG00000017518	-	51	58.282	Scophthalmus_maximus
ENSONIG00000013583	prdm1b	61	56.983	ENSSDUG00000000524	-	55	56.983	Seriola_dumerili
ENSONIG00000013583	prdm1b	86	69.206	ENSSDUG00000020610	prdm1b	90	69.097	Seriola_dumerili
ENSONIG00000013583	prdm1b	61	56.425	ENSSLDG00000001957	-	55	56.425	Seriola_lalandi_dorsalis
ENSONIG00000013583	prdm1b	100	68.947	ENSSLDG00000021973	prdm1b	91	92.771	Seriola_lalandi_dorsalis
ENSONIG00000013583	prdm1b	70	96.104	ENSSPAG00000000803	prdm1b	90	96.104	Stegastes_partitus
ENSONIG00000013583	prdm1b	63	56.250	ENSSPAG00000009830	-	75	50.246	Stegastes_partitus
ENSONIG00000013583	prdm1b	92	85.475	ENSXCOG00000018920	prdm1b	94	85.475	Xiphophorus_couchianus
ENSONIG00000013583	prdm1b	83	87.574	ENSXMAG00000016765	prdm1b	87	84.146	Xiphophorus_maculatus