EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000015886 (Gene tree)
Gene ID: 100704541
Gene Symbol: ptcd3
Alias: -
Full Name: pentatricopeptide repeat domain 3
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 8898 bases
Position: chrGL831239.1:1982029-1990926
Accession: 100704541
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000020008	PPR	PF01535.20	8.4e-07	1	1
ENSONIP00000020009	PPR	PF01535.20	1.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000020026	-	1917	-	ENSONIP00000020009	638 (aa)	-	I3KFW4
ENSONIT00000020025	-	2692	-	ENSONIP00000020008	665 (aa)	XP_005456425	I3KFW3

Gene Model

Click here to download ENSONIG00000015886's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000015886's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000015886	ptcd3	94	84.365	ENSACIG00000022263	ptcd3	100	84.666	Amphilophus_citrinellus
ENSONIG00000015886	ptcd3	100	79.129	ENSAOCG00000017186	ptcd3	98	79.129	Amphiprion_ocellaris
ENSONIG00000015886	ptcd3	100	79.279	ENSAPEG00000016069	ptcd3	98	79.279	Amphiprion_percula
ENSONIG00000015886	ptcd3	90	47.350	ENSAPLG00000005086	PTCD3	97	47.547	Anas_platyrhynchos
ENSONIG00000015886	ptcd3	100	97.143	ENSACLG00000020653	ptcd3	100	97.143	Astatotilapia_calliptera
ENSONIG00000015886	ptcd3	100	58.982	ENSAMXG00000011570	ptcd3	100	58.982	Astyanax_mexicanus
ENSONIG00000015886	ptcd3	98	78.626	ENSCVAG00000020820	ptcd3	98	80.200	Cyprinodon_variegatus
ENSONIG00000015886	ptcd3	89	73.286	ENSGAFG00000015291	ptcd3	94	73.768	Gambusia_affinis
ENSONIG00000015886	ptcd3	100	97.444	ENSHBUG00000020056	ptcd3	100	97.444	Haplochromis_burtoni
ENSONIG00000015886	ptcd3	99	75.789	ENSLBEG00000015349	ptcd3	99	75.789	Labrus_bergylta
ENSONIG00000015886	ptcd3	100	97.143	ENSMZEG00005004980	ptcd3	100	97.143	Maylandia_zebra
ENSONIG00000015886	ptcd3	94	44.845	ENSMGAG00000013124	PTCD3	99	45.600	Meleagris_gallopavo
ENSONIG00000015886	ptcd3	100	76.497	ENSMALG00000013282	ptcd3	100	76.497	Monopterus_albus
ENSONIG00000015886	ptcd3	94	87.458	ENSNBRG00000000447	ptcd3	100	87.940	Neolamprologus_brichardi
ENSONIG00000015886	ptcd3	100	78.496	ENSORLG00000008776	ptcd3	100	79.601	Oryzias_latipes
ENSONIG00000015886	ptcd3	99	78.313	ENSORLG00020020676	ptcd3	99	79.098	Oryzias_latipes_hni
ENSONIG00000015886	ptcd3	90	62.791	ENSORLG00015015978	ptcd3	99	64.393	Oryzias_latipes_hsok
ENSONIG00000015886	ptcd3	97	75.806	ENSPFOG00000004442	ptcd3	100	74.540	Poecilia_formosa
ENSONIG00000015886	ptcd3	90	75.040	ENSPLAG00000021401	ptcd3	100	75.040	Poecilia_latipinna
ENSONIG00000015886	ptcd3	92	72.743	ENSPMEG00000007153	ptcd3	100	73.038	Poecilia_mexicana
ENSONIG00000015886	ptcd3	99	55.244	ENSSFOG00015019643	ptcd3	97	57.423	Scleropages_formosus
ENSONIG00000015886	ptcd3	84	51.481	ENSTGUG00000010760	PTCD3	100	52.134	Taeniopygia_guttata
ENSONIG00000015886	ptcd3	100	66.018	ENSTRUG00000003939	ptcd3	100	66.018	Takifugu_rubripes