EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000016639 (Gene tree)
Gene ID: 100711061
Gene Symbol: trnau1apb
Alias: -
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 7083 bases
Position: chrGL831261.1:553857-560939
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000020961	RRM_1	PF00076.22	7.9e-31	1	2
ENSONIP00000020961	RRM_1	PF00076.22	7.9e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000020980	-	888	-	ENSONIP00000020961	295 (aa)	-	I3KIL6

Gene Model

Click here to download ENSONIG00000016639's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000016639's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000016639	trnau1apb	58	31.034	ENSONIG00000010290	tial1	69	31.034
ENSONIG00000016639	trnau1apb	82	47.984	ENSONIG00000004715	trnau1apa	97	47.984

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000016639	trnau1apb	100	76.846	ENSAPOG00000010086	trnau1apb	99	77.333	Acanthochromis_polyacanthus
ENSONIG00000016639	trnau1apb	100	85.489	ENSACIG00000001863	trnau1apb	99	85.489	Amphilophus_citrinellus
ENSONIG00000016639	trnau1apb	100	78.994	ENSAOCG00000011891	trnau1apb	99	81.306	Amphiprion_ocellaris
ENSONIG00000016639	trnau1apb	100	74.132	ENSAPEG00000008029	trnau1apb	99	82.583	Amphiprion_percula
ENSONIG00000016639	trnau1apb	100	76.331	ENSATEG00000002196	trnau1apb	99	78.635	Anabas_testudineus
ENSONIG00000016639	trnau1apb	100	84.259	ENSACLG00000003016	trnau1apb	99	85.449	Astatotilapia_calliptera
ENSONIG00000016639	trnau1apb	99	64.505	ENSAMXG00000001805	trnau1apb	98	66.667	Astyanax_mexicanus
ENSONIG00000016639	trnau1apb	99	73.669	ENSCSEG00000018215	trnau1apb	99	75.668	Cynoglossus_semilaevis
ENSONIG00000016639	trnau1apb	96	70.031	ENSCVAG00000017866	trnau1apb	100	71.560	Cyprinodon_variegatus
ENSONIG00000016639	trnau1apb	99	61.270	ENSDARG00000056475	trnau1apb	97	63.810	Danio_rerio
ENSONIG00000016639	trnau1apb	100	59.202	ENSELUG00000016683	trnau1apb	98	62.883	Esox_lucius
ENSONIG00000016639	trnau1apb	100	73.684	ENSFHEG00000001267	trnau1apb	100	73.252	Fundulus_heteroclitus
ENSONIG00000016639	trnau1apb	100	68.373	ENSGMOG00000001160	trnau1apb	99	69.880	Gadus_morhua
ENSONIG00000016639	trnau1apb	59	94.253	ENSGAFG00000006770	trnau1apb	99	71.019	Gambusia_affinis
ENSONIG00000016639	trnau1apb	100	77.576	ENSGACG00000014944	trnau1apb	99	78.963	Gasterosteus_aculeatus
ENSONIG00000016639	trnau1apb	68	43.439	ENSGAGG00000022384	-	78	43.439	Gopherus_agassizii
ENSONIG00000016639	trnau1apb	100	90.508	ENSHBUG00000018944	trnau1apb	99	90.508	Haplochromis_burtoni
ENSONIG00000016639	trnau1apb	75	82.805	ENSHCOG00000011350	trnau1apb	81	74.118	Hippocampus_comes
ENSONIG00000016639	trnau1apb	99	60.692	ENSIPUG00000008843	tsp1l	99	63.950	Ictalurus_punctatus
ENSONIG00000016639	trnau1apb	73	90.741	ENSKMAG00000010082	trnau1apb	99	76.331	Kryptolebias_marmoratus
ENSONIG00000016639	trnau1apb	100	78.012	ENSLBEG00000020480	trnau1apb	99	79.758	Labrus_bergylta
ENSONIG00000016639	trnau1apb	100	54.403	ENSLOCG00000013175	trnau1apb	98	55.625	Lepisosteus_oculatus
ENSONIG00000016639	trnau1apb	100	78.571	ENSMAMG00000012192	trnau1apb	99	80.000	Mastacembelus_armatus
ENSONIG00000016639	trnau1apb	100	86.310	ENSMZEG00005014852	trnau1apb	99	86.310	Maylandia_zebra
ENSONIG00000016639	trnau1apb	68	44.608	ENSMGAG00000003234	-	99	46.829	Meleagris_gallopavo
ENSONIG00000016639	trnau1apb	96	65.294	ENSMMOG00000021521	trnau1apb	99	66.667	Mola_mola
ENSONIG00000016639	trnau1apb	99	72.168	ENSMALG00000003772	trnau1apb	99	72.785	Monopterus_albus
ENSONIG00000016639	trnau1apb	97	83.387	ENSNBRG00000000751	trnau1apb	98	84.665	Neolamprologus_brichardi
ENSONIG00000016639	trnau1apb	75	89.140	ENSORLG00000013265	trnau1apb	99	73.900	Oryzias_latipes
ENSONIG00000016639	trnau1apb	100	71.471	ENSORLG00020004464	trnau1apb	99	74.336	Oryzias_latipes_hni
ENSONIG00000016639	trnau1apb	100	71.471	ENSORLG00015021098	trnau1apb	99	74.336	Oryzias_latipes_hsok
ENSONIG00000016639	trnau1apb	75	88.688	ENSOMEG00000016531	trnau1apb	99	73.900	Oryzias_melastigma
ENSONIG00000016639	trnau1apb	60	80.556	ENSPKIG00000007995	trnau1apb	99	62.376	Paramormyrops_kingsleyae
ENSONIG00000016639	trnau1apb	68	43.636	ENSPSIG00000004189	-	78	43.636	Pelodiscus_sinensis
ENSONIG00000016639	trnau1apb	99	71.521	ENSPMGG00000018509	trnau1apb	99	72.168	Periophthalmus_magnuspinnatus
ENSONIG00000016639	trnau1apb	100	79.683	ENSPFOG00000003938	trnau1apb	99	79.683	Poecilia_formosa
ENSONIG00000016639	trnau1apb	100	72.807	ENSPLAG00000015480	trnau1apb	99	73.099	Poecilia_latipinna
ENSONIG00000016639	trnau1apb	100	72.807	ENSPMEG00000012743	trnau1apb	99	73.099	Poecilia_mexicana
ENSONIG00000016639	trnau1apb	100	70.845	ENSPREG00000015035	trnau1apb	99	72.222	Poecilia_reticulata
ENSONIG00000016639	trnau1apb	99	83.125	ENSPNYG00000012127	trnau1apb	98	84.326	Pundamilia_nyererei
ENSONIG00000016639	trnau1apb	99	61.755	ENSPNAG00000019138	trnau1apb	97	64.890	Pygocentrus_nattereri
ENSONIG00000016639	trnau1apb	99	58.282	ENSSFOG00015014158	trnau1apb	98	62.727	Scleropages_formosus
ENSONIG00000016639	trnau1apb	99	75.749	ENSSMAG00000001745	trnau1apb	99	77.778	Scophthalmus_maximus
ENSONIG00000016639	trnau1apb	99	76.855	ENSSDUG00000011109	trnau1apb	99	79.762	Seriola_dumerili
ENSONIG00000016639	trnau1apb	99	76.855	ENSSLDG00000012947	trnau1apb	99	79.762	Seriola_lalandi_dorsalis
ENSONIG00000016639	trnau1apb	67	35.081	ENSSPUG00000016701	-	82	36.948	Sphenodon_punctatus
ENSONIG00000016639	trnau1apb	100	83.713	ENSSPAG00000006917	trnau1apb	99	85.948	Stegastes_partitus
ENSONIG00000016639	trnau1apb	100	70.796	ENSTRUG00000008608	trnau1apb	99	72.189	Takifugu_rubripes
ENSONIG00000016639	trnau1apb	100	77.258	ENSTNIG00000000916	trnau1apb	100	77.258	Tetraodon_nigroviridis
ENSONIG00000016639	trnau1apb	95	66.559	ENSXCOG00000007974	trnau1apb	94	74.552	Xiphophorus_couchianus
ENSONIG00000016639	trnau1apb	100	72.595	ENSXMAG00000029918	trnau1apb	99	73.684	Xiphophorus_maculatus