EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSONIG00000016673 (Gene tree)
Gene ID: 100691398
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 19073 bases
Position: chrGL831261.1:2088322-2107394
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000021002	XRN_N	PF03159.18	9.6e-97	1	1
ENSONIP00000021004	XRN_N	PF03159.18	2e-96	1	1
ENSONIP00000021003	XRN_N	PF03159.18	2e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000021021	-	4639	-	ENSONIP00000021002	1515 (aa)	-	I3KIQ7
ENSONIT00000021023	-	5142	-	ENSONIP00000021004	1714 (aa)	-	I3KIQ9
ENSONIT00000021022	-	5172	-	ENSONIP00000021003	1724 (aa)	-	I3KIQ8

Gene Model

Click here to download ENSONIG00000016673's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000016673's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000016673	xrn1	99	64.581	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSONIG00000016673	xrn1	94	90.270	ENSAPOG00000000622	xrn1	99	90.106	Acanthochromis_polyacanthus
ENSONIG00000016673	xrn1	99	64.137	ENSAMEG00000012538	XRN1	100	61.425	Ailuropoda_melanoleuca
ENSONIG00000016673	xrn1	99	90.571	ENSACIG00000001057	xrn1	99	94.290	Amphilophus_citrinellus
ENSONIG00000016673	xrn1	99	86.905	ENSAOCG00000014097	xrn1	100	87.188	Amphiprion_ocellaris
ENSONIG00000016673	xrn1	99	88.689	ENSAPEG00000006620	xrn1	99	85.829	Amphiprion_percula
ENSONIG00000016673	xrn1	96	86.936	ENSATEG00000009752	xrn1	99	86.936	Anabas_testudineus
ENSONIG00000016673	xrn1	98	63.590	ENSAPLG00000004905	XRN1	100	60.686	Anas_platyrhynchos
ENSONIG00000016673	xrn1	99	63.465	ENSACAG00000004985	XRN1	100	59.649	Anolis_carolinensis
ENSONIG00000016673	xrn1	99	64.702	ENSANAG00000029013	XRN1	99	73.175	Aotus_nancymaae
ENSONIG00000016673	xrn1	99	97.407	ENSACLG00000004806	xrn1	99	93.033	Astatotilapia_calliptera
ENSONIG00000016673	xrn1	99	71.166	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSONIG00000016673	xrn1	99	64.633	ENSBTAG00000011524	XRN1	100	61.013	Bos_taurus
ENSONIG00000016673	xrn1	79	37.910	WBGene00012730	xrn-1	80	36.280	Caenorhabditis_elegans
ENSONIG00000016673	xrn1	99	64.382	ENSCJAG00000001872	XRN1	100	60.969	Callithrix_jacchus
ENSONIG00000016673	xrn1	99	65.187	ENSCAFG00000007783	XRN1	100	62.164	Canis_familiaris
ENSONIG00000016673	xrn1	99	64.728	ENSCAFG00020009120	XRN1	99	76.063	Canis_lupus_dingo
ENSONIG00000016673	xrn1	99	64.036	ENSCHIG00000019192	XRN1	99	60.956	Capra_hircus
ENSONIG00000016673	xrn1	99	64.732	ENSTSYG00000002705	XRN1	100	61.666	Carlito_syrichta
ENSONIG00000016673	xrn1	55	85.581	ENSCAPG00000004604	-	94	85.581	Cavia_aperea
ENSONIG00000016673	xrn1	99	64.446	ENSCCAG00000034800	XRN1	99	78.006	Cebus_capucinus
ENSONIG00000016673	xrn1	99	64.774	ENSCATG00000041794	XRN1	100	61.368	Cercocebus_atys
ENSONIG00000016673	xrn1	99	65.385	ENSCLAG00000001451	XRN1	99	77.937	Chinchilla_lanigera
ENSONIG00000016673	xrn1	99	64.710	ENSCSAG00000011265	XRN1	100	61.311	Chlorocebus_sabaeus
ENSONIG00000016673	xrn1	54	93.506	ENSCHOG00000013961	-	53	93.506	Choloepus_hoffmanni
ENSONIG00000016673	xrn1	78	50.896	ENSCSAVG00000008584	-	93	50.896	Ciona_savignyi
ENSONIG00000016673	xrn1	99	64.687	ENSCANG00000037495	XRN1	99	78.006	Colobus_angolensis_palliatus
ENSONIG00000016673	xrn1	99	64.668	ENSCGRG00001019411	Xrn1	99	78.095	Cricetulus_griseus_chok1gshd
ENSONIG00000016673	xrn1	99	64.668	ENSCGRG00000012464	Xrn1	99	78.095	Cricetulus_griseus_crigri
ENSONIG00000016673	xrn1	99	75.082	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSONIG00000016673	xrn1	75	86.561	ENSCVAG00000013089	xrn1	99	86.561	Cyprinodon_variegatus
ENSONIG00000016673	xrn1	99	73.964	ENSDARG00000091652	xrn1	98	81.875	Danio_rerio
ENSONIG00000016673	xrn1	99	64.026	ENSDORG00000013833	Xrn1	100	61.092	Dipodomys_ordii
ENSONIG00000016673	xrn1	85	39.364	FBgn0020261	pcm	78	39.213	Drosophila_melanogaster
ENSONIG00000016673	xrn1	86	69.369	ENSETEG00000003978	XRN1	88	69.421	Echinops_telfairi
ENSONIG00000016673	xrn1	99	64.919	ENSEASG00005002687	XRN1	99	78.288	Equus_asinus_asinus
ENSONIG00000016673	xrn1	99	64.854	ENSECAG00000008301	XRN1	100	61.460	Equus_caballus
ENSONIG00000016673	xrn1	92	65.789	ENSEEUG00000011323	XRN1	92	65.789	Erinaceus_europaeus
ENSONIG00000016673	xrn1	99	75.000	ENSELUG00000000169	xrn1	100	70.831	Esox_lucius
ENSONIG00000016673	xrn1	99	61.628	ENSFCAG00000027589	XRN1	99	79.956	Felis_catus
ENSONIG00000016673	xrn1	99	64.411	ENSFALG00000007021	XRN1	100	60.598	Ficedula_albicollis
ENSONIG00000016673	xrn1	99	64.281	ENSFDAG00000020494	XRN1	99	77.778	Fukomys_damarensis
ENSONIG00000016673	xrn1	89	74.281	ENSGMOG00000006396	xrn1	88	74.445	Gadus_morhua
ENSONIG00000016673	xrn1	99	64.909	ENSGALG00000002706	XRN1	100	60.831	Gallus_gallus
ENSONIG00000016673	xrn1	99	80.218	ENSGACG00000014328	xrn1	100	78.681	Gasterosteus_aculeatus
ENSONIG00000016673	xrn1	99	64.510	ENSGAGG00000017535	XRN1	99	63.413	Gopherus_agassizii
ENSONIG00000016673	xrn1	99	64.645	ENSGGOG00000008047	XRN1	100	61.323	Gorilla_gorilla
ENSONIG00000016673	xrn1	99	93.484	ENSHBUG00000005908	xrn1	99	95.253	Haplochromis_burtoni
ENSONIG00000016673	xrn1	99	64.958	ENSHGLG00000014476	XRN1	99	77.778	Heterocephalus_glaber_female
ENSONIG00000016673	xrn1	99	64.958	ENSHGLG00100015130	XRN1	99	77.778	Heterocephalus_glaber_male
ENSONIG00000016673	xrn1	96	83.159	ENSHCOG00000014062	xrn1	99	83.159	Hippocampus_comes
ENSONIG00000016673	xrn1	99	72.284	ENSIPUG00000015229	xrn1	100	67.829	Ictalurus_punctatus
ENSONIG00000016673	xrn1	99	64.073	ENSSTOG00000013552	XRN1	99	77.778	Ictidomys_tridecemlineatus
ENSONIG00000016673	xrn1	97	64.052	ENSJJAG00000010863	Xrn1	99	77.025	Jaculus_jaculus
ENSONIG00000016673	xrn1	99	81.969	ENSKMAG00000021356	xrn1	95	85.865	Kryptolebias_marmoratus
ENSONIG00000016673	xrn1	99	81.168	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSONIG00000016673	xrn1	99	64.408	ENSLACG00000009020	XRN1	100	61.058	Latimeria_chalumnae
ENSONIG00000016673	xrn1	99	69.654	ENSLOCG00000007944	xrn1	100	66.078	Lepisosteus_oculatus
ENSONIG00000016673	xrn1	70	74.032	ENSLAFG00000015426	XRN1	99	73.433	Loxodonta_africana
ENSONIG00000016673	xrn1	99	64.710	ENSMFAG00000032599	XRN1	100	61.425	Macaca_fascicularis
ENSONIG00000016673	xrn1	99	64.710	ENSMMUG00000014038	XRN1	100	61.425	Macaca_mulatta
ENSONIG00000016673	xrn1	99	64.793	ENSMNEG00000034217	XRN1	100	61.552	Macaca_nemestrina
ENSONIG00000016673	xrn1	94	88.531	ENSMAMG00000013219	xrn1	99	88.531	Mastacembelus_armatus
ENSONIG00000016673	xrn1	99	97.274	ENSMZEG00005015099	xrn1	99	92.918	Maylandia_zebra
ENSONIG00000016673	xrn1	98	62.844	ENSMGAG00000006333	XRN1	100	60.526	Meleagris_gallopavo
ENSONIG00000016673	xrn1	99	64.881	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSONIG00000016673	xrn1	64	78.323	ENSMOCG00000008665	Xrn1	99	78.095	Microtus_ochrogaster
ENSONIG00000016673	xrn1	99	64.383	ENSMODG00000021236	XRN1	100	60.589	Monodelphis_domestica
ENSONIG00000016673	xrn1	99	81.126	ENSMALG00000004098	xrn1	99	82.931	Monopterus_albus
ENSONIG00000016673	xrn1	99	59.215	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSONIG00000016673	xrn1	99	63.919	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSONIG00000016673	xrn1	99	64.208	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSONIG00000016673	xrn1	99	63.919	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSONIG00000016673	xrn1	99	64.997	ENSMPUG00000012040	XRN1	100	61.981	Mustela_putorius_furo
ENSONIG00000016673	xrn1	99	63.677	ENSMLUG00000016885	XRN1	100	60.562	Myotis_lucifugus
ENSONIG00000016673	xrn1	64	72.857	ENSNGAG00000023964	Xrn1	99	73.810	Nannospalax_galili
ENSONIG00000016673	xrn1	99	64.645	ENSNLEG00000004726	XRN1	100	61.345	Nomascus_leucogenys
ENSONIG00000016673	xrn1	67	95.876	ENSMEUG00000014473	-	67	96.117	Notamacropus_eugenii
ENSONIG00000016673	xrn1	71	67.153	ENSOPRG00000007337	-	73	67.783	Ochotona_princeps
ENSONIG00000016673	xrn1	90	61.918	ENSOANG00000006735	XRN1	100	58.451	Ornithorhynchus_anatinus
ENSONIG00000016673	xrn1	99	64.119	ENSOCUG00000001861	XRN1	100	60.996	Oryctolagus_cuniculus
ENSONIG00000016673	xrn1	99	84.897	ENSORLG00000013005	xrn1	98	79.692	Oryzias_latipes
ENSONIG00000016673	xrn1	99	84.631	ENSORLG00020005559	xrn1	100	79.464	Oryzias_latipes_hni
ENSONIG00000016673	xrn1	99	84.032	ENSORLG00015022523	xrn1	98	86.911	Oryzias_latipes_hsok
ENSONIG00000016673	xrn1	99	85.030	ENSOMEG00000015397	xrn1	99	88.689	Oryzias_melastigma
ENSONIG00000016673	xrn1	99	62.839	ENSOGAG00000000170	XRN1	100	59.476	Otolemur_garnettii
ENSONIG00000016673	xrn1	99	64.748	ENSOARG00000006343	XRN1	99	61.060	Ovis_aries
ENSONIG00000016673	xrn1	99	64.774	ENSPPAG00000010180	XRN1	100	61.420	Pan_paniscus
ENSONIG00000016673	xrn1	99	65.546	ENSPPRG00000007125	XRN1	100	61.499	Panthera_pardus
ENSONIG00000016673	xrn1	99	65.546	ENSPTIG00000021081	XRN1	100	61.499	Panthera_tigris_altaica
ENSONIG00000016673	xrn1	99	64.774	ENSPTRG00000015482	XRN1	100	61.477	Pan_troglodytes
ENSONIG00000016673	xrn1	99	64.710	ENSPANG00000010638	XRN1	100	61.481	Papio_anubis
ENSONIG00000016673	xrn1	99	64.465	ENSPSIG00000018050	XRN1	100	62.108	Pelodiscus_sinensis
ENSONIG00000016673	xrn1	64	86.624	ENSPMGG00000002648	xrn1	99	86.145	Periophthalmus_magnuspinnatus
ENSONIG00000016673	xrn1	64	78.481	ENSPEMG00000020610	Xrn1	99	78.254	Peromyscus_maniculatus_bairdii
ENSONIG00000016673	xrn1	73	51.431	ENSPMAG00000002975	xrn1	99	49.411	Petromyzon_marinus
ENSONIG00000016673	xrn1	95	72.400	ENSPCIG00000028735	XRN1	99	78.254	Phascolarctos_cinereus
ENSONIG00000016673	xrn1	99	84.947	ENSPFOG00000013932	xrn1	97	85.212	Poecilia_formosa
ENSONIG00000016673	xrn1	99	85.429	ENSPLAG00000021653	xrn1	97	85.562	Poecilia_latipinna
ENSONIG00000016673	xrn1	99	84.997	ENSPMEG00000003076	xrn1	95	85.195	Poecilia_mexicana
ENSONIG00000016673	xrn1	99	84.804	ENSPREG00000021147	xrn1	100	84.882	Poecilia_reticulata
ENSONIG00000016673	xrn1	99	64.774	ENSPPYG00000014172	XRN1	100	61.473	Pongo_abelii
ENSONIG00000016673	xrn1	98	60.079	ENSPCAG00000005638	XRN1	92	67.214	Procavia_capensis
ENSONIG00000016673	xrn1	99	64.603	ENSPCOG00000013089	XRN1	99	77.532	Propithecus_coquereli
ENSONIG00000016673	xrn1	88	70.639	ENSPVAG00000016265	XRN1	87	85.549	Pteropus_vampyrus
ENSONIG00000016673	xrn1	99	94.548	ENSPNYG00000010570	xrn1	99	92.202	Pundamilia_nyererei
ENSONIG00000016673	xrn1	99	71.776	ENSPNAG00000023531	xrn1	100	67.874	Pygocentrus_nattereri
ENSONIG00000016673	xrn1	99	63.843	ENSRNOG00000042951	Xrn1	100	61.600	Rattus_norvegicus
ENSONIG00000016673	xrn1	99	64.645	ENSRBIG00000041227	XRN1	100	61.108	Rhinopithecus_bieti
ENSONIG00000016673	xrn1	79	33.127	YGL173C	XRN1	73	52.989	Saccharomyces_cerevisiae
ENSONIG00000016673	xrn1	99	64.516	ENSSBOG00000029561	XRN1	100	60.889	Saimiri_boliviensis_boliviensis
ENSONIG00000016673	xrn1	98	64.173	ENSSHAG00000016207	XRN1	100	59.782	Sarcophilus_harrisii
ENSONIG00000016673	xrn1	99	70.623	ENSSFOG00015024211	xrn1	100	66.071	Scleropages_formosus
ENSONIG00000016673	xrn1	99	83.816	ENSSMAG00000016534	xrn1	99	85.569	Scophthalmus_maximus
ENSONIG00000016673	xrn1	91	90.738	ENSSDUG00000010306	xrn1	97	90.738	Seriola_dumerili
ENSONIG00000016673	xrn1	96	89.818	ENSSLDG00000021543	xrn1	100	89.818	Seriola_lalandi_dorsalis
ENSONIG00000016673	xrn1	68	67.765	ENSSARG00000007741	-	75	67.765	Sorex_araneus
ENSONIG00000016673	xrn1	99	64.437	ENSTGUG00000008498	XRN1	100	61.355	Taeniopygia_guttata
ENSONIG00000016673	xrn1	99	78.042	ENSTRUG00000004895	xrn1	96	85.470	Takifugu_rubripes
ENSONIG00000016673	xrn1	99	74.306	ENSTNIG00000017615	xrn1	100	71.551	Tetraodon_nigroviridis
ENSONIG00000016673	xrn1	83	84.946	ENSTBEG00000003256	XRN1	85	83.333	Tupaia_belangeri
ENSONIG00000016673	xrn1	97	62.732	ENSTTRG00000012914	XRN1	100	57.817	Tursiops_truncatus
ENSONIG00000016673	xrn1	99	63.443	ENSUAMG00000001608	XRN1	99	73.259	Ursus_americanus
ENSONIG00000016673	xrn1	99	64.861	ENSUMAG00000013625	XRN1	100	61.364	Ursus_maritimus
ENSONIG00000016673	xrn1	99	62.645	ENSVPAG00000004690	XRN1	100	59.954	Vicugna_pacos
ENSONIG00000016673	xrn1	99	65.212	ENSVVUG00000024461	XRN1	99	78.481	Vulpes_vulpes
ENSONIG00000016673	xrn1	99	65.152	ENSXETG00000000619	xrn1	99	85.827	Xenopus_tropicalis
ENSONIG00000016673	xrn1	93	86.639	ENSXCOG00000007917	xrn1	96	87.131	Xiphophorus_couchianus
ENSONIG00000016673	xrn1	92	86.557	ENSXMAG00000018320	xrn1	98	86.639	Xiphophorus_maculatus