EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000017314 (Gene tree)
Gene ID: -
Gene Symbol: pabpc1l
Alias: -
Full Name: embryonic polyadenylate-binding protein
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 11853 bases
Position: chrGL831137.1:7862234-7874086
Accession: 100697848
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000021836	PABP	PF00658.18	1.6e-29	1	1
ENSONIP00000021836	RRM_5	PF13893.6	6.7e-09	1	2
ENSONIP00000021836	RRM_5	PF13893.6	6.7e-09	2	2
ENSONIP00000021836	RRM_1	PF00076.22	1.1e-88	1	4
ENSONIP00000021836	RRM_1	PF00076.22	1.1e-88	2	4
ENSONIP00000021836	RRM_1	PF00076.22	1.1e-88	3	4
ENSONIP00000021836	RRM_1	PF00076.22	1.1e-88	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000021855	-	2747	-	ENSONIP00000021836	626 (aa)	XP_025757424	I3KL41

Gene Model

Click here to download ENSONIG00000017314's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000017314's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000017314	pabpc1l	58	32.967	ENSONIG00000003197	-	98	32.967
ENSONIG00000017314	pabpc1l	59	30.000	ENSONIG00000007552	ELAVL2	91	30.000
ENSONIG00000017314	pabpc1l	51	35.616	ENSONIG00000008300	celf1	63	35.616
ENSONIG00000017314	pabpc1l	59	30.435	ENSONIG00000015897	tia1	72	30.208
ENSONIG00000017314	pabpc1l	99	66.299	ENSONIG00000008176	pabpc4	97	66.983
ENSONIG00000017314	pabpc1l	57	37.079	ENSONIG00000001096	elavl1a	87	37.079
ENSONIG00000017314	pabpc1l	59	30.263	ENSONIG00000002360	elavl4	86	30.263
ENSONIG00000017314	pabpc1l	99	69.484	ENSONIG00000006871	-	98	69.640
ENSONIG00000017314	pabpc1l	99	69.953	ENSONIG00000002717	pabpc1b	98	70.110

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000017314	pabpc1l	99	67.512	ENSG00000101104	PABPC1L	98	76.235	Homo_sapiens
ENSONIG00000017314	pabpc1l	99	84.084	ENSAPOG00000010842	pabpc1l	99	84.084	Acanthochromis_polyacanthus
ENSONIG00000017314	pabpc1l	99	62.634	ENSAMEG00000004099	PABPC1L	100	63.093	Ailuropoda_melanoleuca
ENSONIG00000017314	pabpc1l	100	93.939	ENSACIG00000021004	-	100	94.313	Amphilophus_citrinellus
ENSONIG00000017314	pabpc1l	100	87.380	ENSAOCG00000006167	-	100	87.380	Amphiprion_ocellaris
ENSONIG00000017314	pabpc1l	100	85.942	ENSAPEG00000010558	-	100	89.423	Amphiprion_percula
ENSONIG00000017314	pabpc1l	100	87.917	ENSATEG00000007428	pabpc1l	100	88.553	Anabas_testudineus
ENSONIG00000017314	pabpc1l	98	71.840	ENSAPLG00000008415	PABPC1L	99	71.791	Anas_platyrhynchos
ENSONIG00000017314	pabpc1l	99	74.566	ENSACAG00000011841	PABPC1L	99	74.566	Anolis_carolinensis
ENSONIG00000017314	pabpc1l	99	67.732	ENSANAG00000026826	PABPC1L	99	67.732	Aotus_nancymaae
ENSONIG00000017314	pabpc1l	100	98.722	ENSACLG00000024791	pabpc1l	100	98.722	Astatotilapia_calliptera
ENSONIG00000017314	pabpc1l	100	80.763	ENSAMXG00000013552	pabpc1l	100	80.763	Astyanax_mexicanus
ENSONIG00000017314	pabpc1l	62	86.905	ENSBTAG00000055300	-	100	86.905	Bos_taurus
ENSONIG00000017314	pabpc1l	66	61.168	ENSBTAG00000016849	PABPC1L	87	61.168	Bos_taurus
ENSONIG00000017314	pabpc1l	99	67.891	ENSCJAG00000017628	PABPC1L	99	67.891	Callithrix_jacchus
ENSONIG00000017314	pabpc1l	58	81.034	ENSCJAG00000038506	-	100	81.034	Callithrix_jacchus
ENSONIG00000017314	pabpc1l	99	63.679	ENSCAFG00000009573	PABPC1L	100	63.679	Canis_familiaris
ENSONIG00000017314	pabpc1l	99	67.409	ENSCAFG00020013828	PABPC1L	99	67.409	Canis_lupus_dingo
ENSONIG00000017314	pabpc1l	98	66.883	ENSCHIG00000025759	PABPC1L	91	66.883	Capra_hircus
ENSONIG00000017314	pabpc1l	99	66.933	ENSTSYG00000006645	PABPC1L	99	66.933	Carlito_syrichta
ENSONIG00000017314	pabpc1l	98	61.400	ENSCAPG00000014519	PABPC1L	99	61.400	Cavia_aperea
ENSONIG00000017314	pabpc1l	99	64.013	ENSCPOG00000013633	PABPC1L	99	64.013	Cavia_porcellus
ENSONIG00000017314	pabpc1l	99	67.252	ENSCCAG00000023338	PABPC1L	99	67.732	Cebus_capucinus
ENSONIG00000017314	pabpc1l	99	68.051	ENSCATG00000034065	PABPC1L	99	68.051	Cercocebus_atys
ENSONIG00000017314	pabpc1l	99	63.694	ENSCLAG00000005298	PABPC1L	99	63.854	Chinchilla_lanigera
ENSONIG00000017314	pabpc1l	99	67.891	ENSCSAG00000014242	PABPC1L	99	67.891	Chlorocebus_sabaeus
ENSONIG00000017314	pabpc1l	70	79.864	ENSCPBG00000017755	-	99	79.864	Chrysemys_picta_bellii
ENSONIG00000017314	pabpc1l	53	85.496	ENSCPBG00000007810	-	83	85.496	Chrysemys_picta_bellii
ENSONIG00000017314	pabpc1l	85	51.111	ENSCING00000002796	-	97	50.791	Ciona_intestinalis
ENSONIG00000017314	pabpc1l	99	60.835	ENSCSAVG00000004246	-	89	71.523	Ciona_savignyi
ENSONIG00000017314	pabpc1l	98	62.243	ENSCSAVG00000003102	-	100	85.714	Ciona_savignyi
ENSONIG00000017314	pabpc1l	99	64.882	ENSCANG00000037530	PABPC1L	99	64.882	Colobus_angolensis_palliatus
ENSONIG00000017314	pabpc1l	99	59.748	ENSCGRG00001021938	Pabpc1l	99	59.748	Cricetulus_griseus_chok1gshd
ENSONIG00000017314	pabpc1l	99	59.748	ENSCGRG00000007946	Pabpc1l	99	59.748	Cricetulus_griseus_crigri
ENSONIG00000017314	pabpc1l	99	75.962	ENSCSEG00000021295	pabpc1l	99	75.962	Cynoglossus_semilaevis
ENSONIG00000017314	pabpc1l	100	87.261	ENSCVAG00000015943	-	99	96.947	Cyprinodon_variegatus
ENSONIG00000017314	pabpc1l	99	78.947	ENSDARG00000002597	pabpc1l	88	95.385	Danio_rerio
ENSONIG00000017314	pabpc1l	99	67.943	ENSDNOG00000048450	PABPC1L	99	67.943	Dasypus_novemcinctus
ENSONIG00000017314	pabpc1l	99	65.280	ENSDORG00000001067	Pabpc1l	99	65.280	Dipodomys_ordii
ENSONIG00000017314	pabpc1l	95	76.016	ENSETEG00000009969	PABPC1L	72	76.016	Echinops_telfairi
ENSONIG00000017314	pabpc1l	50	74.684	ENSEASG00005023407	-	64	74.684	Equus_asinus_asinus
ENSONIG00000017314	pabpc1l	62	84.524	ENSEASG00005023408	-	100	84.524	Equus_asinus_asinus
ENSONIG00000017314	pabpc1l	65	68.000	ENSECAG00000040139	-	81	68.000	Equus_caballus
ENSONIG00000017314	pabpc1l	99	66.294	ENSEEUG00000005978	PABPC1L	99	66.294	Erinaceus_europaeus
ENSONIG00000017314	pabpc1l	100	80.763	ENSELUG00000001811	pabpc1l	100	80.763	Esox_lucius
ENSONIG00000017314	pabpc1l	99	68.000	ENSFCAG00000011692	PABPC1L	99	68.000	Felis_catus
ENSONIG00000017314	pabpc1l	86	72.007	ENSFALG00000005372	PABPC1L	98	68.151	Ficedula_albicollis
ENSONIG00000017314	pabpc1l	99	63.200	ENSFDAG00000008291	PABPC1L	99	63.200	Fukomys_damarensis
ENSONIG00000017314	pabpc1l	100	89.297	ENSFHEG00000003398	pabpc1l	100	89.297	Fundulus_heteroclitus
ENSONIG00000017314	pabpc1l	99	83.067	ENSGMOG00000004437	pabpc1l	99	83.067	Gadus_morhua
ENSONIG00000017314	pabpc1l	88	74.830	ENSGALG00000004123	PABPC1L	99	80.048	Gallus_gallus
ENSONIG00000017314	pabpc1l	100	84.195	ENSGAFG00000021057	pabpc1l	100	84.195	Gambusia_affinis
ENSONIG00000017314	pabpc1l	99	86.901	ENSGACG00000002792	pabpc1l	100	86.901	Gasterosteus_aculeatus
ENSONIG00000017314	pabpc1l	99	73.651	ENSGAGG00000000589	PABPC1L	98	73.651	Gopherus_agassizii
ENSONIG00000017314	pabpc1l	99	67.512	ENSGGOG00000004584	PABPC1L	99	67.296	Gorilla_gorilla
ENSONIG00000017314	pabpc1l	100	98.882	ENSHBUG00000006134	pabpc1l	100	98.882	Haplochromis_burtoni
ENSONIG00000017314	pabpc1l	100	64.613	ENSHGLG00000008434	PABPC1L	99	64.929	Heterocephalus_glaber_female
ENSONIG00000017314	pabpc1l	58	87.079	ENSHGLG00100019506	-	100	87.079	Heterocephalus_glaber_male
ENSONIG00000017314	pabpc1l	100	64.613	ENSHGLG00100012151	PABPC1L	99	64.929	Heterocephalus_glaber_male
ENSONIG00000017314	pabpc1l	99	87.354	ENSHCOG00000009270	pabpc1l	100	87.354	Hippocampus_comes
ENSONIG00000017314	pabpc1l	58	62.011	ENSIPUG00000006760	-	90	62.011	Ictalurus_punctatus
ENSONIG00000017314	pabpc1l	100	79.491	ENSIPUG00000012602	pabpc1l	100	79.491	Ictalurus_punctatus
ENSONIG00000017314	pabpc1l	58	62.011	ENSIPUG00000006780	-	87	62.011	Ictalurus_punctatus
ENSONIG00000017314	pabpc1l	99	67.093	ENSSTOG00000003739	PABPC1L	99	67.093	Ictidomys_tridecemlineatus
ENSONIG00000017314	pabpc1l	99	52.035	ENSJJAG00000022406	Pabpc1l	99	50.874	Jaculus_jaculus
ENSONIG00000017314	pabpc1l	100	87.859	ENSKMAG00000016847	pabpc1l	100	87.859	Kryptolebias_marmoratus
ENSONIG00000017314	pabpc1l	100	89.457	ENSLBEG00000010084	pabpc1l	100	89.457	Labrus_bergylta
ENSONIG00000017314	pabpc1l	99	72.370	ENSLACG00000005762	PABPC1L	99	73.675	Latimeria_chalumnae
ENSONIG00000017314	pabpc1l	99	80.824	ENSLOCG00000007519	pabpc1l	99	80.824	Lepisosteus_oculatus
ENSONIG00000017314	pabpc1l	99	66.930	ENSLAFG00000003553	PABPC1L	100	66.930	Loxodonta_africana
ENSONIG00000017314	pabpc1l	99	68.371	ENSMFAG00000040365	PABPC1L	99	68.371	Macaca_fascicularis
ENSONIG00000017314	pabpc1l	99	67.572	ENSMNEG00000032298	PABPC1L	99	67.572	Macaca_nemestrina
ENSONIG00000017314	pabpc1l	99	68.051	ENSMLEG00000043139	PABPC1L	99	68.051	Mandrillus_leucophaeus
ENSONIG00000017314	pabpc1l	97	89.951	ENSMAMG00000011854	pabpc1l	97	89.951	Mastacembelus_armatus
ENSONIG00000017314	pabpc1l	100	98.722	ENSMZEG00005023713	pabpc1l	100	98.722	Maylandia_zebra
ENSONIG00000017314	pabpc1l	99	72.655	ENSMGAG00000003674	PABPC1L	99	72.655	Meleagris_gallopavo
ENSONIG00000017314	pabpc1l	99	58.610	ENSMOCG00000013186	Pabpc1l	99	58.610	Microtus_ochrogaster
ENSONIG00000017314	pabpc1l	99	87.680	ENSMMOG00000020574	-	99	87.680	Mola_mola
ENSONIG00000017314	pabpc1l	97	69.756	ENSMODG00000016198	PABPC1L	99	69.756	Monodelphis_domestica
ENSONIG00000017314	pabpc1l	97	89.292	ENSMALG00000021622	pabpc1l	100	89.292	Monopterus_albus
ENSONIG00000017314	pabpc1l	99	60.063	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	60.063	Mus_caroli
ENSONIG00000017314	pabpc1l	99	60.669	ENSMUSG00000054582	Pabpc1l	99	60.669	Mus_musculus
ENSONIG00000017314	pabpc1l	100	59.242	MGP_PahariEiJ_G0026071	Pabpc1l	100	59.621	Mus_pahari
ENSONIG00000017314	pabpc1l	99	60.063	MGP_SPRETEiJ_G0025549	Pabpc1l	99	60.063	Mus_spretus
ENSONIG00000017314	pabpc1l	99	68.320	ENSMPUG00000017646	PABPC1L	99	68.320	Mustela_putorius_furo
ENSONIG00000017314	pabpc1l	98	65.183	ENSMLUG00000006324	PABPC1L	98	65.183	Myotis_lucifugus
ENSONIG00000017314	pabpc1l	99	61.551	ENSNGAG00000010458	Pabpc1l	99	61.551	Nannospalax_galili
ENSONIG00000017314	pabpc1l	100	97.764	ENSNBRG00000016633	pabpc1l	100	97.764	Neolamprologus_brichardi
ENSONIG00000017314	pabpc1l	90	64.362	ENSMEUG00000007905	-	89	64.362	Notamacropus_eugenii
ENSONIG00000017314	pabpc1l	99	67.252	ENSOPRG00000011846	PABPC1L	99	67.252	Ochotona_princeps
ENSONIG00000017314	pabpc1l	57	81.250	ENSODEG00000002920	-	97	81.250	Octodon_degus
ENSONIG00000017314	pabpc1l	99	59.646	ENSODEG00000015482	PABPC1L	99	59.646	Octodon_degus
ENSONIG00000017314	pabpc1l	90	61.579	ENSOANG00000015793	-	100	61.579	Ornithorhynchus_anatinus
ENSONIG00000017314	pabpc1l	99	63.859	ENSOCUG00000003005	PABPC1L	99	64.319	Oryctolagus_cuniculus
ENSONIG00000017314	pabpc1l	100	86.741	ENSORLG00000010322	pabpc1l	100	89.252	Oryzias_latipes
ENSONIG00000017314	pabpc1l	100	86.581	ENSORLG00020021193	pabpc1l	100	89.252	Oryzias_latipes_hni
ENSONIG00000017314	pabpc1l	100	86.581	ENSORLG00015017018	pabpc1l	100	89.252	Oryzias_latipes_hsok
ENSONIG00000017314	pabpc1l	100	84.427	ENSOMEG00000010789	pabpc1l	100	84.427	Oryzias_melastigma
ENSONIG00000017314	pabpc1l	99	66.933	ENSOGAG00000032999	PABPC1L	99	66.933	Otolemur_garnettii
ENSONIG00000017314	pabpc1l	99	67.412	ENSOARG00000004578	PABPC1L	99	67.412	Ovis_aries
ENSONIG00000017314	pabpc1l	99	67.670	ENSPPAG00000039677	PABPC1L	99	67.453	Pan_paniscus
ENSONIG00000017314	pabpc1l	61	67.284	ENSPPRG00000019327	-	98	67.593	Panthera_pardus
ENSONIG00000017314	pabpc1l	98	67.851	ENSPTIG00000006524	PABPC1L	99	67.851	Panthera_tigris_altaica
ENSONIG00000017314	pabpc1l	62	76.543	ENSPTRG00000013531	PABPC1L	98	76.543	Pan_troglodytes
ENSONIG00000017314	pabpc1l	99	68.051	ENSPANG00000018788	PABPC1L	99	68.051	Papio_anubis
ENSONIG00000017314	pabpc1l	100	79.365	ENSPKIG00000007322	pabpc1l	100	79.365	Paramormyrops_kingsleyae
ENSONIG00000017314	pabpc1l	52	84.733	ENSPKIG00000016810	-	93	84.733	Paramormyrops_kingsleyae
ENSONIG00000017314	pabpc1l	66	81.055	ENSPSIG00000013289	PABPC1L	99	81.055	Pelodiscus_sinensis
ENSONIG00000017314	pabpc1l	62	96.212	ENSPMGG00000023117	pabpc1l	97	94.419	Periophthalmus_magnuspinnatus
ENSONIG00000017314	pabpc1l	69	85.641	ENSPMGG00000023121	-	91	85.641	Periophthalmus_magnuspinnatus
ENSONIG00000017314	pabpc1l	99	58.452	ENSPEMG00000020671	Pabpc1l	99	59.242	Peromyscus_maniculatus_bairdii
ENSONIG00000017314	pabpc1l	100	88.818	ENSPFOG00000013241	pabpc1l	100	88.818	Poecilia_formosa
ENSONIG00000017314	pabpc1l	100	88.658	ENSPLAG00000017490	-	100	88.658	Poecilia_latipinna
ENSONIG00000017314	pabpc1l	52	98.462	ENSPLAG00000023686	-	92	98.462	Poecilia_latipinna
ENSONIG00000017314	pabpc1l	100	88.818	ENSPMEG00000007677	pabpc1l	100	88.818	Poecilia_mexicana
ENSONIG00000017314	pabpc1l	62	98.462	ENSPMEG00000009185	-	88	98.462	Poecilia_mexicana
ENSONIG00000017314	pabpc1l	66	95.134	ENSPREG00000015886	pabpc1l	99	95.134	Poecilia_reticulata
ENSONIG00000017314	pabpc1l	99	68.051	ENSPPYG00000011042	PABPC1L	99	68.051	Pongo_abelii
ENSONIG00000017314	pabpc1l	60	84.375	ENSPCAG00000011787	-	75	84.375	Procavia_capensis
ENSONIG00000017314	pabpc1l	99	68.371	ENSPCOG00000020630	PABPC1L	99	68.371	Propithecus_coquereli
ENSONIG00000017314	pabpc1l	99	66.240	ENSPVAG00000012663	PABPC1L	99	66.240	Pteropus_vampyrus
ENSONIG00000017314	pabpc1l	99	95.592	ENSPNYG00000004101	pabpc1l	100	95.592	Pundamilia_nyererei
ENSONIG00000017314	pabpc1l	100	73.132	ENSPNAG00000021248	pabpc1l	100	73.132	Pygocentrus_nattereri
ENSONIG00000017314	pabpc1l	99	58.502	ENSRNOG00000012750	Pabpc1l	99	59.464	Rattus_norvegicus
ENSONIG00000017314	pabpc1l	99	67.891	ENSRBIG00000035381	PABPC1L	99	67.891	Rhinopithecus_bieti
ENSONIG00000017314	pabpc1l	99	67.732	ENSRROG00000044498	PABPC1L	99	67.732	Rhinopithecus_roxellana
ENSONIG00000017314	pabpc1l	99	67.732	ENSSBOG00000009532	-	99	67.732	Saimiri_boliviensis_boliviensis
ENSONIG00000017314	pabpc1l	98	64.242	ENSSHAG00000011446	PABPC1L	100	64.242	Sarcophilus_harrisii
ENSONIG00000017314	pabpc1l	100	79.365	ENSSFOG00015017304	pabpc1l	100	79.365	Scleropages_formosus
ENSONIG00000017314	pabpc1l	100	88.019	ENSSMAG00000010516	pabpc1l	98	98.450	Scophthalmus_maximus
ENSONIG00000017314	pabpc1l	100	90.415	ENSSDUG00000014743	pabpc1l	100	90.415	Seriola_dumerili
ENSONIG00000017314	pabpc1l	97	88.449	ENSSLDG00000006981	pabpc1l	99	93.151	Seriola_lalandi_dorsalis
ENSONIG00000017314	pabpc1l	99	72.512	ENSSPUG00000004233	PABPC1L	99	72.512	Sphenodon_punctatus
ENSONIG00000017314	pabpc1l	100	76.038	ENSSPAG00000017137	pabpc1l	100	76.038	Stegastes_partitus
ENSONIG00000017314	pabpc1l	99	68.421	ENSSSCG00000007382	PABPC1L	99	68.421	Sus_scrofa
ENSONIG00000017314	pabpc1l	99	71.630	ENSTGUG00000005114	PABPC1L	99	71.630	Taeniopygia_guttata
ENSONIG00000017314	pabpc1l	97	87.315	ENSTRUG00000011085	pabpc1l	97	87.315	Takifugu_rubripes
ENSONIG00000017314	pabpc1l	99	85.209	ENSTNIG00000017903	pabpc1l	98	85.209	Tetraodon_nigroviridis
ENSONIG00000017314	pabpc1l	94	77.055	ENSTBEG00000002851	PABPC1L	79	77.055	Tupaia_belangeri
ENSONIG00000017314	pabpc1l	94	65.825	ENSTTRG00000007618	PABPC1L	100	66.066	Tursiops_truncatus
ENSONIG00000017314	pabpc1l	99	65.811	ENSUAMG00000017682	PABPC1L	99	65.811	Ursus_americanus
ENSONIG00000017314	pabpc1l	65	74.085	ENSUMAG00000025436	PABPC1L	91	74.085	Ursus_maritimus
ENSONIG00000017314	pabpc1l	98	75.494	ENSVVUG00000018939	PABPC1L	98	75.494	Vulpes_vulpes
ENSONIG00000017314	pabpc1l	99	70.411	ENSXETG00000022831	pabpc1l	99	70.411	Xenopus_tropicalis
ENSONIG00000017314	pabpc1l	100	87.220	ENSXCOG00000005459	pabpc1l	99	93.617	Xiphophorus_couchianus
ENSONIG00000017314	pabpc1l	100	88.179	ENSXMAG00000017135	pabpc1l	100	88.179	Xiphophorus_maculatus