EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000018123 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c2
Alias: -
Full Name: trinucleotide repeat containing 6C2
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 46959 bases
Position: chrGL831193.1:1592125-1639083
Accession: ZDB-GENE-061207-48
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000022831	Ago_hook	PF10427.9	3.9e-08	1	1
ENSONIP00000022830	Ago_hook	PF10427.9	5.2e-08	1	1
ENSONIP00000022830	RRM_1	PF00076.22	0.00013	1	1
ENSONIP00000022831	RRM_1	PF00076.22	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000022851	-	4644	-	ENSONIP00000022831	1547 (aa)	-	I3KNY6
ENSONIT00000022850	-	4677	-	ENSONIP00000022830	1558 (aa)	-	I3KNY5
ENSONIT00000022852	-	5817	-	ENSONIP00000022832	1569 (aa)	-	I3KNY7

Gene Model

Click here to download ENSONIG00000018123's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000018123's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000018123	tnrc6c2	66	57.447	ENSONIG00000019679	-	53	32.938
ENSONIG00000018123	tnrc6c2	98	57.905	ENSONIG00000002210	tnrc6c1	94	57.795

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000018123	tnrc6c2	100	85.190	ENSAOCG00000017648	tnrc6c2	85	84.826	Amphiprion_ocellaris
ENSONIG00000018123	tnrc6c2	100	84.395	ENSATEG00000003656	tnrc6c2	97	84.468	Anabas_testudineus
ENSONIG00000018123	tnrc6c2	100	92.893	ENSACLG00000006469	tnrc6c2	86	92.773	Astatotilapia_calliptera
ENSONIG00000018123	tnrc6c2	99	59.338	ENSAMXG00000009579	tnrc6c2	96	56.352	Astyanax_mexicanus
ENSONIG00000018123	tnrc6c2	99	59.625	ENSDARG00000103851	tnrc6c2	91	58.344	Danio_rerio
ENSONIG00000018123	tnrc6c2	98	56.070	ENSELUG00000008149	-	79	79.883	Esox_lucius
ENSONIG00000018123	tnrc6c2	98	63.452	ENSELUG00000007206	tnrc6c2	92	65.162	Esox_lucius
ENSONIG00000018123	tnrc6c2	100	81.470	ENSFHEG00000003901	tnrc6c2	98	80.842	Fundulus_heteroclitus
ENSONIG00000018123	tnrc6c2	100	78.450	ENSGACG00000019401	tnrc6c2	88	78.275	Gasterosteus_aculeatus
ENSONIG00000018123	tnrc6c2	100	92.893	ENSHBUG00000018310	tnrc6c2	86	92.773	Haplochromis_burtoni
ENSONIG00000018123	tnrc6c2	100	78.394	ENSHCOG00000017802	tnrc6c2	85	77.868	Hippocampus_comes
ENSONIG00000018123	tnrc6c2	99	54.322	ENSIPUG00000022767	tnrc6c2	93	52.553	Ictalurus_punctatus
ENSONIG00000018123	tnrc6c2	100	85.254	ENSMAMG00000001718	tnrc6c2	98	84.769	Mastacembelus_armatus
ENSONIG00000018123	tnrc6c2	100	92.955	ENSMZEG00005023905	tnrc6c2	86	92.835	Maylandia_zebra
ENSONIG00000018123	tnrc6c2	100	82.972	ENSMALG00000020932	tnrc6c2	92	91.830	Monopterus_albus
ENSONIG00000018123	tnrc6c2	100	92.308	ENSNBRG00000000452	tnrc6c2	97	92.436	Neolamprologus_brichardi
ENSONIG00000018123	tnrc6c2	100	80.238	ENSORLG00000003327	tnrc6c2	85	78.984	Oryzias_latipes
ENSONIG00000018123	tnrc6c2	100	80.050	ENSORLG00020010730	tnrc6c2	85	78.984	Oryzias_latipes_hni
ENSONIG00000018123	tnrc6c2	100	80.238	ENSORLG00015009232	tnrc6c2	85	79.109	Oryzias_latipes_hsok
ENSONIG00000018123	tnrc6c2	100	81.779	ENSOMEG00000017952	tnrc6c2	85	80.201	Oryzias_melastigma
ENSONIG00000018123	tnrc6c2	99	72.914	ENSPFOG00000011590	tnrc6c2	88	72.756	Poecilia_formosa
ENSONIG00000018123	tnrc6c2	100	80.125	ENSPLAG00000006992	tnrc6c2	98	80.163	Poecilia_latipinna
ENSONIG00000018123	tnrc6c2	100	82.571	ENSPMEG00000012946	tnrc6c2	97	79.661	Poecilia_mexicana
ENSONIG00000018123	tnrc6c2	100	81.321	ENSPREG00000015823	tnrc6c2	97	81.258	Poecilia_reticulata
ENSONIG00000018123	tnrc6c2	100	92.178	ENSPNYG00000002582	tnrc6c2	98	92.178	Pundamilia_nyererei
ENSONIG00000018123	tnrc6c2	99	58.515	ENSPNAG00000026838	tnrc6c2	91	58.890	Pygocentrus_nattereri
ENSONIG00000018123	tnrc6c2	97	90.700	ENSSMAG00000015145	tnrc6c2	98	81.537	Scophthalmus_maximus
ENSONIG00000018123	tnrc6c2	97	94.633	ENSSDUG00000020741	tnrc6c2	98	85.447	Seriola_dumerili
ENSONIG00000018123	tnrc6c2	97	94.304	ENSSLDG00000002077	tnrc6c2	98	85.072	Seriola_lalandi_dorsalis
ENSONIG00000018123	tnrc6c2	100	87.337	ENSSPAG00000013052	tnrc6c2	85	87.337	Stegastes_partitus
ENSONIG00000018123	tnrc6c2	100	75.254	ENSTNIG00000004178	tnrc6c2	87	85.777	Tetraodon_nigroviridis
ENSONIG00000018123	tnrc6c2	100	79.577	ENSXCOG00000013252	tnrc6c2	98	80.497	Xiphophorus_couchianus
ENSONIG00000018123	tnrc6c2	100	81.921	ENSXMAG00000006739	tnrc6c2	98	81.921	Xiphophorus_maculatus