EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSONIG00000018552 (Gene tree)
Gene ID: -
Gene Symbol: pcbp4
Alias: -
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 72953 bases
Position: chrGL831335.1:750489-823441
Accession: ZDB-GENE-040426-2122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000023356	KH_1	PF00013.29	1.1e-52	1	3
ENSONIP00000023356	KH_1	PF00013.29	1.1e-52	2	3
ENSONIP00000023356	KH_1	PF00013.29	1.1e-52	3	3
ENSONIP00000023355	KH_1	PF00013.29	2.1e-52	1	3
ENSONIP00000023355	KH_1	PF00013.29	2.1e-52	2	3
ENSONIP00000023355	KH_1	PF00013.29	2.1e-52	3	3
ENSONIP00000023356	KH_2	PF07650.17	4.4e-15	1	1
ENSONIP00000023355	KH_2	PF07650.17	6.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000023377	-	1290	-	ENSONIP00000023356	429 (aa)	-	I3KQG1
ENSONIT00000023376	-	1509	-	ENSONIP00000023355	502 (aa)	-	I3KQG0

Gene Model

Click here to download ENSONIG00000018552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000018552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000018552	pcbp4	70	59.884	ENSONIG00000012122	-	95	61.032
ENSONIG00000018552	pcbp4	74	33.735	ENSONIG00000017713	khsrp	58	33.735
ENSONIG00000018552	pcbp4	72	30.667	ENSONIG00000002163	KHSRP	54	30.667
ENSONIG00000018552	pcbp4	99	60.698	ENSONIG00000010370	zgc:110045	100	61.163
ENSONIG00000018552	pcbp4	71	64.127	ENSONIG00000005135	PCBP2	96	63.722
ENSONIG00000018552	pcbp4	54	33.333	ENSONIG00000002861	fubp3	72	33.333
ENSONIG00000018552	pcbp4	99	78.654	ENSONIG00000017378	-	100	77.958
ENSONIG00000018552	pcbp4	69	33.099	ENSONIG00000004506	igf2bp3	59	33.099
ENSONIG00000018552	pcbp4	52	35.802	ENSONIG00000018381	fubp1	52	35.802
ENSONIG00000018552	pcbp4	83	41.538	ENSONIG00000015810	nova1	54	41.538
ENSONIG00000018552	pcbp4	57	46.154	ENSONIG00000007565	hnrpkl	88	32.143
ENSONIG00000018552	pcbp4	57	46.970	ENSONIG00000015002	hnrnpk	59	46.970
ENSONIG00000018552	pcbp4	69	33.813	ENSONIG00000009029	igf2bp2b	68	33.813
ENSONIG00000018552	pcbp4	71	67.869	ENSONIG00000004611	-	94	67.869
ENSONIG00000018552	pcbp4	71	65.461	ENSONIG00000017003	pcbp2	96	65.033