EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000019105 (Gene tree)
Gene ID: 100707024
Gene Symbol: a1cf
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Minus strand
Length: 15140 bases
Position: chrGL831209.1:2062018-2077157
Accession: 100707024
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000024051	DND1_DSRM	PF14709.7	1.4e-26	1	1
ENSONIP00000024051	RRM_1	PF00076.22	1.1e-41	1	3
ENSONIP00000024051	RRM_1	PF00076.22	1.1e-41	2	3
ENSONIP00000024051	RRM_1	PF00076.22	1.1e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000024072	-	3545	XM_003449490	ENSONIP00000024051	604 (aa)	XP_003449538	I3KSF5

Gene Model

Click here to download ENSONIG00000019105's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000019105's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000019105	a1cf	85	64.808	ENSONIG00000014096	rbm46	83	64.808
ENSONIG00000019105	a1cf	87	52.852	ENSONIG00000009061	rbm47	76	51.040

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000019105	a1cf	100	77.025	ENSG00000148584	A1CF	100	89.109	Homo_sapiens
ENSONIG00000019105	a1cf	100	84.679	ENSAPOG00000008259	a1cf	100	84.514	Acanthochromis_polyacanthus
ENSONIG00000019105	a1cf	100	75.407	ENSAMEG00000000523	A1CF	100	74.388	Ailuropoda_melanoleuca
ENSONIG00000019105	a1cf	100	95.199	ENSACIG00000008632	a1cf	100	95.199	Amphilophus_citrinellus
ENSONIG00000019105	a1cf	100	86.985	ENSAOCG00000023744	a1cf	97	90.883	Amphiprion_ocellaris
ENSONIG00000019105	a1cf	100	85.854	ENSAPEG00000009537	a1cf	100	86.504	Amphiprion_percula
ENSONIG00000019105	a1cf	100	91.433	ENSATEG00000013720	a1cf	100	91.269	Anabas_testudineus
ENSONIG00000019105	a1cf	100	77.325	ENSAPLG00000002964	A1CF	100	76.020	Anas_platyrhynchos
ENSONIG00000019105	a1cf	100	77.025	ENSACAG00000015269	A1CF	100	76.198	Anolis_carolinensis
ENSONIG00000019105	a1cf	100	77.521	ENSANAG00000019974	A1CF	100	76.364	Aotus_nancymaae
ENSONIG00000019105	a1cf	100	95.530	ENSACLG00000017428	a1cf	100	95.530	Astatotilapia_calliptera
ENSONIG00000019105	a1cf	100	75.365	ENSAMXG00000018180	a1cf	100	75.243	Astyanax_mexicanus
ENSONIG00000019105	a1cf	100	77.686	ENSBTAG00000021195	A1CF	100	78.559	Bos_taurus
ENSONIG00000019105	a1cf	100	76.346	ENSCJAG00000005045	A1CF	100	75.204	Callithrix_jacchus
ENSONIG00000019105	a1cf	100	75.856	ENSCAFG00000015581	A1CF	100	75.041	Canis_familiaris
ENSONIG00000019105	a1cf	100	75.856	ENSCAFG00020026421	A1CF	98	82.667	Canis_lupus_dingo
ENSONIG00000019105	a1cf	100	77.162	ENSCHIG00000020411	A1CF	100	76.183	Capra_hircus
ENSONIG00000019105	a1cf	94	77.233	ENSTSYG00000001755	A1CF	100	75.832	Carlito_syrichta
ENSONIG00000019105	a1cf	100	73.761	ENSCAPG00000017386	A1CF	100	76.038	Cavia_aperea
ENSONIG00000019105	a1cf	100	75.367	ENSCPOG00000009807	A1CF	100	73.899	Cavia_porcellus
ENSONIG00000019105	a1cf	100	76.183	ENSCCAG00000018168	A1CF	100	74.878	Cebus_capucinus
ENSONIG00000019105	a1cf	100	77.025	ENSCATG00000043715	A1CF	100	75.372	Cercocebus_atys
ENSONIG00000019105	a1cf	100	75.367	ENSCLAG00000010424	A1CF	100	74.225	Chinchilla_lanigera
ENSONIG00000019105	a1cf	100	76.346	ENSCSAG00000007032	A1CF	100	74.715	Chlorocebus_sabaeus
ENSONIG00000019105	a1cf	98	74.415	ENSCHOG00000009089	A1CF	98	73.244	Choloepus_hoffmanni
ENSONIG00000019105	a1cf	100	76.672	ENSCPBG00000026464	A1CF	100	75.530	Chrysemys_picta_bellii
ENSONIG00000019105	a1cf	100	76.183	ENSCANG00000038032	A1CF	100	74.551	Colobus_angolensis_palliatus
ENSONIG00000019105	a1cf	100	75.204	ENSCGRG00001017413	A1cf	100	74.225	Cricetulus_griseus_chok1gshd
ENSONIG00000019105	a1cf	100	74.472	ENSCGRG00000017332	A1cf	100	73.736	Cricetulus_griseus_crigri
ENSONIG00000019105	a1cf	100	85.714	ENSCSEG00000002361	a1cf	100	86.364	Cynoglossus_semilaevis
ENSONIG00000019105	a1cf	100	88.962	ENSCVAG00000010520	a1cf	100	89.621	Cyprinodon_variegatus
ENSONIG00000019105	a1cf	100	82.645	ENSDARG00000002968	a1cf	100	82.149	Danio_rerio
ENSONIG00000019105	a1cf	100	75.693	ENSDNOG00000002829	A1CF	100	74.551	Dasypus_novemcinctus
ENSONIG00000019105	a1cf	82	85.507	ENSETEG00000012527	A1CF	81	85.507	Echinops_telfairi
ENSONIG00000019105	a1cf	100	76.384	ENSEASG00005012924	A1CF	100	75.407	Equus_asinus_asinus
ENSONIG00000019105	a1cf	100	75.896	ENSECAG00000010424	A1CF	100	74.919	Equus_caballus
ENSONIG00000019105	a1cf	78	68.000	ENSEEUG00000000013	A1CF	97	67.467	Erinaceus_europaeus
ENSONIG00000019105	a1cf	100	80.914	ENSELUG00000003159	a1cf	100	80.750	Esox_lucius
ENSONIG00000019105	a1cf	100	77.025	ENSFCAG00000011179	A1CF	100	75.537	Felis_catus
ENSONIG00000019105	a1cf	100	79.008	ENSFALG00000013183	A1CF	100	77.851	Ficedula_albicollis
ENSONIG00000019105	a1cf	100	76.364	ENSFDAG00000019371	A1CF	100	75.207	Fukomys_damarensis
ENSONIG00000019105	a1cf	100	83.361	ENSFHEG00000019652	a1cf	96	92.188	Fundulus_heteroclitus
ENSONIG00000019105	a1cf	100	77.504	ENSGMOG00000018943	a1cf	100	76.105	Gadus_morhua
ENSONIG00000019105	a1cf	96	76.871	ENSGALG00000003765	A1CF	96	76.207	Gallus_gallus
ENSONIG00000019105	a1cf	100	82.208	ENSGAFG00000014868	a1cf	100	81.054	Gambusia_affinis
ENSONIG00000019105	a1cf	100	85.854	ENSGACG00000010241	a1cf	100	85.528	Gasterosteus_aculeatus
ENSONIG00000019105	a1cf	96	75.510	ENSGAGG00000016508	A1CF	98	74.320	Gopherus_agassizii
ENSONIG00000019105	a1cf	100	76.020	ENSGGOG00000009670	A1CF	100	74.878	Gorilla_gorilla
ENSONIG00000019105	a1cf	100	98.841	ENSHBUG00000021959	a1cf	100	98.841	Haplochromis_burtoni
ENSONIG00000019105	a1cf	100	75.530	ENSHGLG00000008955	A1CF	100	74.715	Heterocephalus_glaber_female
ENSONIG00000019105	a1cf	100	74.878	ENSHGLG00100000518	A1CF	100	74.062	Heterocephalus_glaber_male
ENSONIG00000019105	a1cf	100	75.281	ENSHCOG00000017669	a1cf	100	76.565	Hippocampus_comes
ENSONIG00000019105	a1cf	89	83.789	ENSIPUG00000010367	a1cf	96	83.607	Ictalurus_punctatus
ENSONIG00000019105	a1cf	100	87.702	ENSKMAG00000006568	a1cf	100	86.731	Kryptolebias_marmoratus
ENSONIG00000019105	a1cf	99	88.780	ENSLBEG00000020994	a1cf	99	88.130	Labrus_bergylta
ENSONIG00000019105	a1cf	100	79.008	ENSLACG00000008061	A1CF	100	78.017	Latimeria_chalumnae
ENSONIG00000019105	a1cf	100	80.914	ENSLOCG00000006302	a1cf	100	79.608	Lepisosteus_oculatus
ENSONIG00000019105	a1cf	100	76.020	ENSLAFG00000015462	A1CF	100	76.509	Loxodonta_africana
ENSONIG00000019105	a1cf	100	77.190	ENSMFAG00000035948	A1CF	100	75.537	Macaca_fascicularis
ENSONIG00000019105	a1cf	100	77.190	ENSMMUG00000007077	A1CF	100	75.537	Macaca_mulatta
ENSONIG00000019105	a1cf	100	77.025	ENSMNEG00000031454	A1CF	100	75.372	Macaca_nemestrina
ENSONIG00000019105	a1cf	100	76.020	ENSMLEG00000037223	A1CF	100	74.388	Mandrillus_leucophaeus
ENSONIG00000019105	a1cf	100	89.803	ENSMAMG00000010402	a1cf	100	89.474	Mastacembelus_armatus
ENSONIG00000019105	a1cf	100	92.985	ENSMZEG00005013245	a1cf	100	92.985	Maylandia_zebra
ENSONIG00000019105	a1cf	100	76.873	ENSMGAG00000001507	A1CF	100	75.733	Meleagris_gallopavo
ENSONIG00000019105	a1cf	100	74.878	ENSMAUG00000007422	A1cf	100	74.062	Mesocricetus_auratus
ENSONIG00000019105	a1cf	100	76.442	ENSMICG00000003377	A1CF	100	77.100	Microcebus_murinus
ENSONIG00000019105	a1cf	100	75.856	ENSMOCG00000021536	A1cf	100	74.715	Microtus_ochrogaster
ENSONIG00000019105	a1cf	100	79.242	ENSMMOG00000009422	a1cf	100	78.748	Mola_mola
ENSONIG00000019105	a1cf	89	79.664	ENSMODG00000016478	A1CF	97	78.918	Monodelphis_domestica
ENSONIG00000019105	a1cf	100	81.457	ENSMALG00000012992	a1cf	100	81.457	Monopterus_albus
ENSONIG00000019105	a1cf	100	76.033	MGP_CAROLIEiJ_G0022873	A1cf	100	74.876	Mus_caroli
ENSONIG00000019105	a1cf	100	76.033	ENSMUSG00000052595	A1cf	99	82.338	Mus_musculus
ENSONIG00000019105	a1cf	100	75.372	MGP_PahariEiJ_G0014366	A1cf	100	74.215	Mus_pahari
ENSONIG00000019105	a1cf	100	76.568	MGP_SPRETEiJ_G0023792	A1cf	100	75.413	Mus_spretus
ENSONIG00000019105	a1cf	100	70.310	ENSMPUG00000016971	A1CF	100	69.331	Mustela_putorius_furo
ENSONIG00000019105	a1cf	100	76.098	ENSMLUG00000016071	A1CF	100	75.367	Myotis_lucifugus
ENSONIG00000019105	a1cf	100	75.856	ENSNGAG00000015136	A1cf	100	74.715	Nannospalax_galili
ENSONIG00000019105	a1cf	100	98.675	ENSNBRG00000001712	a1cf	100	98.675	Neolamprologus_brichardi
ENSONIG00000019105	a1cf	100	76.509	ENSNLEG00000012028	A1CF	100	75.367	Nomascus_leucogenys
ENSONIG00000019105	a1cf	94	77.583	ENSMEUG00000015909	A1CF	100	75.832	Notamacropus_eugenii
ENSONIG00000019105	a1cf	88	68.889	ENSOPRG00000010667	A1CF	100	66.370	Ochotona_princeps
ENSONIG00000019105	a1cf	78	77.637	ENSOANG00000007360	A1CF	99	77.426	Ornithorhynchus_anatinus
ENSONIG00000019105	a1cf	100	76.529	ENSOCUG00000011587	A1CF	100	75.372	Oryctolagus_cuniculus
ENSONIG00000019105	a1cf	100	83.740	ENSORLG00000013342	a1cf	100	83.415	Oryzias_latipes
ENSONIG00000019105	a1cf	100	86.039	ENSORLG00020000586	a1cf	100	85.877	Oryzias_latipes_hni
ENSONIG00000019105	a1cf	100	86.039	ENSORLG00015018569	a1cf	100	85.877	Oryzias_latipes_hsok
ENSONIG00000019105	a1cf	100	87.479	ENSOMEG00000013531	a1cf	100	86.985	Oryzias_melastigma
ENSONIG00000019105	a1cf	100	75.041	ENSOGAG00000012884	A1CF	100	75.204	Otolemur_garnettii
ENSONIG00000019105	a1cf	100	76.835	ENSOARG00000013695	A1CF	100	75.856	Ovis_aries
ENSONIG00000019105	a1cf	97	74.916	ENSPPAG00000028115	A1CF	99	78.585	Pan_paniscus
ENSONIG00000019105	a1cf	100	76.020	ENSPPRG00000012180	A1CF	100	74.551	Panthera_pardus
ENSONIG00000019105	a1cf	100	76.020	ENSPTIG00000021223	A1CF	100	74.551	Panthera_tigris_altaica
ENSONIG00000019105	a1cf	100	77.025	ENSPTRG00000002508	A1CF	100	75.868	Pan_troglodytes
ENSONIG00000019105	a1cf	100	77.190	ENSPANG00000021988	A1CF	100	75.537	Papio_anubis
ENSONIG00000019105	a1cf	100	80.914	ENSPKIG00000025176	a1cf	100	81.077	Paramormyrops_kingsleyae
ENSONIG00000019105	a1cf	100	77.686	ENSPSIG00000010318	A1CF	100	76.033	Pelodiscus_sinensis
ENSONIG00000019105	a1cf	98	71.212	ENSPMGG00000013359	a1cf	99	73.232	Periophthalmus_magnuspinnatus
ENSONIG00000019105	a1cf	100	75.367	ENSPEMG00000015021	A1cf	100	74.225	Peromyscus_maniculatus_bairdii
ENSONIG00000019105	a1cf	100	76.694	ENSPCIG00000002175	A1CF	100	77.190	Phascolarctos_cinereus
ENSONIG00000019105	a1cf	100	87.642	ENSPFOG00000006683	a1cf	100	88.293	Poecilia_formosa
ENSONIG00000019105	a1cf	100	87.642	ENSPFOG00000007437	-	100	88.293	Poecilia_formosa
ENSONIG00000019105	a1cf	100	88.962	ENSPLAG00000001210	-	100	89.621	Poecilia_latipinna
ENSONIG00000019105	a1cf	100	88.962	ENSPLAG00000000026	a1cf	100	89.621	Poecilia_latipinna
ENSONIG00000019105	a1cf	100	79.739	ENSPMEG00000015529	-	100	80.392	Poecilia_mexicana
ENSONIG00000019105	a1cf	100	80.795	ENSPMEG00000000921	a1cf	100	81.457	Poecilia_mexicana
ENSONIG00000019105	a1cf	100	87.317	ENSPREG00000016298	a1cf	100	87.967	Poecilia_reticulata
ENSONIG00000019105	a1cf	100	77.521	ENSPPYG00000002819	A1CF	100	76.364	Pongo_abelii
ENSONIG00000019105	a1cf	80	60.373	ENSPCAG00000006463	A1CF	79	59.711	Procavia_capensis
ENSONIG00000019105	a1cf	100	75.367	ENSPCOG00000024172	A1CF	100	75.856	Propithecus_coquereli
ENSONIG00000019105	a1cf	100	97.876	ENSPNYG00000017944	a1cf	100	97.876	Pundamilia_nyererei
ENSONIG00000019105	a1cf	100	84.375	ENSPNAG00000007704	a1cf	100	84.185	Pygocentrus_nattereri
ENSONIG00000019105	a1cf	100	76.860	ENSRNOG00000033195	A1cf	100	75.702	Rattus_norvegicus
ENSONIG00000019105	a1cf	100	70.894	ENSRBIG00000042892	A1CF	100	73.269	Rhinopithecus_bieti
ENSONIG00000019105	a1cf	100	76.183	ENSRROG00000041398	A1CF	100	74.551	Rhinopithecus_roxellana
ENSONIG00000019105	a1cf	100	76.835	ENSSBOG00000021930	A1CF	100	75.769	Saimiri_boliviensis_boliviensis
ENSONIG00000019105	a1cf	100	78.017	ENSSHAG00000005096	A1CF	100	76.860	Sarcophilus_harrisii
ENSONIG00000019105	a1cf	100	83.690	ENSSFOG00015011774	a1cf	100	83.690	Scleropages_formosus
ENSONIG00000019105	a1cf	100	89.233	ENSSMAG00000013271	a1cf	100	88.744	Scophthalmus_maximus
ENSONIG00000019105	a1cf	100	88.455	ENSSDUG00000013930	a1cf	100	88.130	Seriola_dumerili
ENSONIG00000019105	a1cf	100	83.609	ENSSLDG00000004290	a1cf	100	83.609	Seriola_lalandi_dorsalis
ENSONIG00000019105	a1cf	95	69.512	ENSSARG00000005940	A1CF	95	68.990	Sorex_araneus
ENSONIG00000019105	a1cf	97	73.693	ENSSPUG00000006797	A1CF	95	73.299	Sphenodon_punctatus
ENSONIG00000019105	a1cf	100	77.325	ENSSSCG00000010431	A1CF	100	76.346	Sus_scrofa
ENSONIG00000019105	a1cf	100	77.850	ENSTGUG00000005090	A1CF	100	76.384	Taeniopygia_guttata
ENSONIG00000019105	a1cf	100	86.201	ENSTRUG00000001982	a1cf	100	85.390	Takifugu_rubripes
ENSONIG00000019105	a1cf	100	86.062	ENSTNIG00000003580	a1cf	100	85.251	Tetraodon_nigroviridis
ENSONIG00000019105	a1cf	97	72.526	ENSTTRG00000013190	A1CF	95	71.672	Tursiops_truncatus
ENSONIG00000019105	a1cf	100	76.860	ENSUAMG00000020065	A1CF	100	75.372	Ursus_americanus
ENSONIG00000019105	a1cf	100	75.367	ENSUMAG00000011162	A1CF	100	74.062	Ursus_maritimus
ENSONIG00000019105	a1cf	87	74.858	ENSVPAG00000006130	A1CF	86	73.535	Vicugna_pacos
ENSONIG00000019105	a1cf	100	77.025	ENSVVUG00000002504	A1CF	100	76.198	Vulpes_vulpes
ENSONIG00000019105	a1cf	100	70.147	ENSXETG00000006611	a1cf	100	69.984	Xenopus_tropicalis
ENSONIG00000019105	a1cf	100	90.115	ENSXCOG00000003302	a1cf	100	89.621	Xiphophorus_couchianus
ENSONIG00000019105	a1cf	100	88.943	ENSXMAG00000016703	a1cf	100	88.455	Xiphophorus_maculatus