EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSONIG00000020247 (Gene tree)
Gene ID: 100690725
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Oreochromis_niloticus
Status: putative
Strand: Plus strand
Length: 4445 bases
Position: chrGL831152.1:634334-638778
Accession: 100690725
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSONIP00000025513	RRM_1	PF00076.22	1.2e-31	1	2
ENSONIP00000025513	RRM_1	PF00076.22	1.2e-31	2	2
ENSONIP00000025514	RRM_1	PF00076.22	1.3e-31	1	2
ENSONIP00000025514	RRM_1	PF00076.22	1.3e-31	2	2
ENSONIP00000025513	RRM_3	PF08777.11	1.6e-07	1	1
ENSONIP00000025514	RRM_3	PF08777.11	1.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSONIT00000025535	-	1041	-	ENSONIP00000025514	346 (aa)	-	I3KWL8
ENSONIT00000025534	-	1598	XM_005450114	ENSONIP00000025513	340 (aa)	XP_005450171	I3KWL7

Gene Model

Click here to download ENSONIG00000020247's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSONIG00000020247's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSONIG00000020247	-	52	86.339	ENSONIG00000001925	-	52	85.946
ENSONIG00000020247	-	72	53.125	ENSONIG00000019583	srsf5a	63	63.978
ENSONIG00000020247	-	68	41.736	ENSONIG00000004860	-	66	46.471
ENSONIG00000020247	-	75	51.273	ENSONIG00000005759	srsf5b	61	63.333
ENSONIG00000020247	-	63	40.625	ENSONIG00000004857	-	68	45.087

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSONIG00000020247	-	53	84.239	ENSG00000124193	SRSF6	61	86.585	Homo_sapiens
ENSONIG00000020247	-	53	70.811	ENSAMEG00000003710	SRSF6	53	70.652	Ailuropoda_melanoleuca
ENSONIG00000020247	-	96	60.423	ENSACIG00000023658	-	76	68.872	Amphilophus_citrinellus
ENSONIG00000020247	-	100	82.709	ENSACIG00000020091	-	95	92.126	Amphilophus_citrinellus
ENSONIG00000020247	-	100	78.674	ENSAOCG00000004309	-	72	82.422	Amphiprion_ocellaris
ENSONIG00000020247	-	53	85.405	ENSAPEG00000013086	-	53	86.486	Amphiprion_percula
ENSONIG00000020247	-	58	91.542	ENSAPEG00000020746	-	84	76.426	Amphiprion_percula
ENSONIG00000020247	-	53	94.972	ENSATEG00000007255	-	71	91.257	Anabas_testudineus
ENSONIG00000020247	-	53	83.978	ENSACAG00000002061	SRSF6	70	70.312	Anolis_carolinensis
ENSONIG00000020247	-	53	84.239	ENSANAG00000024080	SRSF6	61	86.585	Aotus_nancymaae
ENSONIG00000020247	-	53	83.333	ENSAMXG00000042692	-	96	82.222	Astyanax_mexicanus
ENSONIG00000020247	-	53	86.022	ENSAMXG00000003101	-	91	67.335	Astyanax_mexicanus
ENSONIG00000020247	-	53	84.783	ENSBTAG00000008527	SRSF6	61	87.805	Bos_taurus
ENSONIG00000020247	-	53	84.239	ENSCJAG00000048403	SRSF6	68	84.153	Callithrix_jacchus
ENSONIG00000020247	-	53	84.783	ENSCAFG00000009289	SRSF6	61	87.805	Canis_familiaris
ENSONIG00000020247	-	53	84.783	ENSCAFG00020013559	SRSF6	61	87.805	Canis_lupus_dingo
ENSONIG00000020247	-	53	84.783	ENSCHIG00000015890	-	61	87.805	Capra_hircus
ENSONIG00000020247	-	53	84.239	ENSCHIG00000009148	-	53	84.153	Capra_hircus
ENSONIG00000020247	-	53	78.804	ENSCPOG00000011761	SRSF6	61	86.585	Cavia_porcellus
ENSONIG00000020247	-	53	84.239	ENSCCAG00000026018	-	61	86.585	Cebus_capucinus
ENSONIG00000020247	-	53	75.135	ENSCCAG00000018540	-	60	72.826	Cebus_capucinus
ENSONIG00000020247	-	53	84.239	ENSCATG00000030794	SRSF6	61	86.585	Cercocebus_atys
ENSONIG00000020247	-	53	84.239	ENSCLAG00000010247	SRSF6	61	86.585	Chinchilla_lanigera
ENSONIG00000020247	-	53	84.239	ENSCSAG00000014022	SRSF6	53	84.153	Chlorocebus_sabaeus
ENSONIG00000020247	-	53	83.957	ENSCPBG00000018200	SRSF6	87	69.333	Chrysemys_picta_bellii
ENSONIG00000020247	-	53	83.152	ENSCANG00000037774	-	53	83.060	Colobus_angolensis_palliatus
ENSONIG00000020247	-	53	84.239	ENSCGRG00001022339	Srsf6	61	86.585	Cricetulus_griseus_chok1gshd
ENSONIG00000020247	-	53	80.556	ENSDARG00000013729	srsf6a	68	72.692	Danio_rerio
ENSONIG00000020247	-	53	83.422	ENSDARG00000016783	srsf6b	85	90.123	Danio_rerio
ENSONIG00000020247	-	53	84.239	ENSDNOG00000008410	SRSF6	53	84.153	Dasypus_novemcinctus
ENSONIG00000020247	-	53	84.239	ENSDORG00000028378	Srsf6	61	86.585	Dipodomys_ordii
ENSONIG00000020247	-	53	81.421	ENSETEG00000006221	SRSF6	87	67.667	Echinops_telfairi
ENSONIG00000020247	-	53	84.783	ENSEASG00005023429	SRSF6	53	84.699	Equus_asinus_asinus
ENSONIG00000020247	-	53	84.783	ENSECAG00000023932	SRSF6	56	84.699	Equus_caballus
ENSONIG00000020247	-	52	87.709	ENSELUG00000013506	SRSF6	72	91.358	Esox_lucius
ENSONIG00000020247	-	53	84.783	ENSFCAG00000032814	SRSF6	53	84.699	Felis_catus
ENSONIG00000020247	-	100	62.050	ENSFHEG00000023065	srsf6a	66	72.868	Fundulus_heteroclitus
ENSONIG00000020247	-	97	63.514	ENSGMOG00000014458	srsf6a	99	66.033	Gadus_morhua
ENSONIG00000020247	-	52	74.432	ENSGMOG00000006105	srsf6a	62	72.159	Gadus_morhua
ENSONIG00000020247	-	53	83.422	ENSGALG00000000990	SRSF6	61	86.585	Gallus_gallus
ENSONIG00000020247	-	96	54.522	ENSGACG00000006084	srsf6a	53	83.243	Gasterosteus_aculeatus
ENSONIG00000020247	-	53	83.957	ENSGAGG00000003238	SRSF6	87	69.333	Gopherus_agassizii
ENSONIG00000020247	-	53	84.239	ENSGGOG00000009808	SRSF6	61	86.585	Gorilla_gorilla
ENSONIG00000020247	-	100	87.353	ENSHBUG00000006386	-	100	90.588	Haplochromis_burtoni
ENSONIG00000020247	-	53	84.239	ENSHGLG00000007348	SRSF6	61	86.585	Heterocephalus_glaber_female
ENSONIG00000020247	-	55	67.708	ENSHGLG00000007701	-	57	65.556	Heterocephalus_glaber_female
ENSONIG00000020247	-	95	64.706	ENSHCOG00000002740	srsf6a	57	83.333	Hippocampus_comes
ENSONIG00000020247	-	51	84.971	ENSIPUG00000016856	SRSF6	71	76.000	Ictalurus_punctatus
ENSONIG00000020247	-	53	84.239	ENSSTOG00000010866	SRSF6	61	86.585	Ictidomys_tridecemlineatus
ENSONIG00000020247	-	53	83.889	ENSKMAG00000011934	srsf6a	59	83.889	Kryptolebias_marmoratus
ENSONIG00000020247	-	96	65.487	ENSLBEG00000007356	srsf6a	51	83.152	Labrus_bergylta
ENSONIG00000020247	-	80	63.578	ENSLACG00000005466	SRSF6	54	84.153	Latimeria_chalumnae
ENSONIG00000020247	-	53	78.212	ENSLACG00000009389	-	51	67.063	Latimeria_chalumnae
ENSONIG00000020247	-	53	84.239	ENSMFAG00000036925	SRSF6	61	86.585	Macaca_fascicularis
ENSONIG00000020247	-	53	84.239	ENSMMUG00000006742	SRSF6	61	86.585	Macaca_mulatta
ENSONIG00000020247	-	53	83.696	ENSMNEG00000027392	-	61	85.366	Macaca_nemestrina
ENSONIG00000020247	-	53	83.696	ENSMNEG00000038270	-	76	72.308	Macaca_nemestrina
ENSONIG00000020247	-	52	82.022	ENSMZEG00005020658	-	60	81.461	Maylandia_zebra
ENSONIG00000020247	-	100	89.412	ENSMZEG00005008032	-	100	89.412	Maylandia_zebra
ENSONIG00000020247	-	53	83.696	ENSMICG00000008537	SRSF6	61	86.585	Microcebus_murinus
ENSONIG00000020247	-	53	84.324	ENSMODG00000003107	SRSF6	54	85.405	Monodelphis_domestica
ENSONIG00000020247	-	53	84.239	MGP_CAROLIEiJ_G0024606	Srsf6	61	86.585	Mus_caroli
ENSONIG00000020247	-	53	84.239	ENSMUSG00000016921	Srsf6	61	86.585	Mus_musculus
ENSONIG00000020247	-	53	84.239	MGP_PahariEiJ_G0026050	Srsf6	61	86.585	Mus_pahari
ENSONIG00000020247	-	53	84.239	MGP_SPRETEiJ_G0025528	Srsf6	61	86.585	Mus_spretus
ENSONIG00000020247	-	53	84.783	ENSMPUG00000017692	SRSF6	64	84.699	Mustela_putorius_furo
ENSONIG00000020247	-	53	62.500	ENSMLUG00000016618	SRSF6	53	63.736	Myotis_lucifugus
ENSONIG00000020247	-	53	84.239	ENSNGAG00000017560	Srsf6	61	86.585	Nannospalax_galili
ENSONIG00000020247	-	52	85.792	ENSNBRG00000001846	-	92	49.791	Neolamprologus_brichardi
ENSONIG00000020247	-	100	87.353	ENSNBRG00000014709	-	100	90.588	Neolamprologus_brichardi
ENSONIG00000020247	-	53	84.239	ENSNLEG00000006524	SRSF6	61	86.585	Nomascus_leucogenys
ENSONIG00000020247	-	53	84.324	ENSMEUG00000014615	SRSF6	61	85.405	Notamacropus_eugenii
ENSONIG00000020247	-	62	61.538	ENSOCUG00000009785	-	63	68.421	Oryctolagus_cuniculus
ENSONIG00000020247	-	52	54.237	ENSOCUG00000023999	-	70	52.514	Oryctolagus_cuniculus
ENSONIG00000020247	-	53	83.696	ENSOGAG00000014468	SRSF6	53	83.607	Otolemur_garnettii
ENSONIG00000020247	-	53	82.609	ENSOARG00000003117	SRSF6	53	81.522	Ovis_aries
ENSONIG00000020247	-	53	83.696	ENSPPAG00000034327	-	53	83.607	Pan_paniscus
ENSONIG00000020247	-	53	70.166	ENSPPAG00000043131	-	57	72.131	Pan_paniscus
ENSONIG00000020247	-	53	84.783	ENSPPRG00000008917	SRSF6	53	84.699	Panthera_pardus
ENSONIG00000020247	-	53	81.111	ENSPTIG00000021305	-	54	69.922	Panthera_tigris_altaica
ENSONIG00000020247	-	53	70.166	ENSPTRG00000046274	-	57	72.131	Pan_troglodytes
ENSONIG00000020247	-	53	84.239	ENSPTRG00000044686	-	61	86.585	Pan_troglodytes
ENSONIG00000020247	-	53	84.239	ENSPANG00000035224	SRSF6	61	86.585	Papio_anubis
ENSONIG00000020247	-	95	69.912	ENSPKIG00000018463	-	80	88.889	Paramormyrops_kingsleyae
ENSONIG00000020247	-	60	68.269	ENSPKIG00000015703	-	95	60.959	Paramormyrops_kingsleyae
ENSONIG00000020247	-	53	84.324	ENSPCIG00000003820	SRSF6	61	86.585	Phascolarctos_cinereus
ENSONIG00000020247	-	53	87.931	ENSPFOG00000006437	srsf6a	69	75.746	Poecilia_formosa
ENSONIG00000020247	-	98	63.818	ENSPLAG00000009243	srsf6a	79	79.528	Poecilia_latipinna
ENSONIG00000020247	-	53	84.239	ENSPMEG00000006042	SRSF6	53	83.696	Poecilia_mexicana
ENSONIG00000020247	-	53	84.239	ENSPPYG00000011019	SRSF6	53	84.153	Pongo_abelii
ENSONIG00000020247	-	53	84.783	ENSPCAG00000010954	SRSF6	55	84.699	Procavia_capensis
ENSONIG00000020247	-	53	83.696	ENSPCOG00000026364	SRSF6	61	86.585	Propithecus_coquereli
ENSONIG00000020247	-	53	84.239	ENSPVAG00000015232	SRSF6	53	84.615	Pteropus_vampyrus
ENSONIG00000020247	-	52	85.792	ENSPNYG00000011272	-	51	85.405	Pundamilia_nyererei
ENSONIG00000020247	-	100	87.059	ENSPNYG00000004944	-	100	90.294	Pundamilia_nyererei
ENSONIG00000020247	-	53	84.239	ENSRNOG00000006380	Srsf6	54	84.153	Rattus_norvegicus
ENSONIG00000020247	-	53	84.530	ENSRBIG00000041414	SRSF6	62	87.500	Rhinopithecus_bieti
ENSONIG00000020247	-	53	84.239	ENSRROG00000029989	SRSF6	61	86.585	Rhinopithecus_roxellana
ENSONIG00000020247	-	52	70.000	ENSSBOG00000034078	-	54	67.760	Saimiri_boliviensis_boliviensis
ENSONIG00000020247	-	53	84.239	ENSSBOG00000033708	-	61	86.585	Saimiri_boliviensis_boliviensis
ENSONIG00000020247	-	53	84.324	ENSSHAG00000012805	SRSF6	54	85.405	Sarcophilus_harrisii
ENSONIG00000020247	-	52	87.293	ENSSFOG00015015169	SRSF6	59	87.432	Scleropages_formosus
ENSONIG00000020247	-	95	65.217	ENSSFOG00015019681	-	53	83.938	Scleropages_formosus
ENSONIG00000020247	-	97	76.163	ENSSMAG00000017447	-	72	78.682	Scophthalmus_maximus
ENSONIG00000020247	-	53	85.946	ENSSDUG00000016097	srsf6a	53	85.946	Seriola_dumerili
ENSONIG00000020247	-	98	60.882	ENSSLDG00000022841	srsf6a	53	85.946	Seriola_lalandi_dorsalis
ENSONIG00000020247	-	53	84.530	ENSSPUG00000004967	SRSF6	61	86.585	Sphenodon_punctatus
ENSONIG00000020247	-	74	72.519	ENSSPAG00000002362	srsf6a	66	84.574	Stegastes_partitus
ENSONIG00000020247	-	53	84.783	ENSSSCG00000007362	SRSF6	61	84.699	Sus_scrofa
ENSONIG00000020247	-	53	84.239	ENSTGUG00000003455	SRSF6	72	70.656	Taeniopygia_guttata
ENSONIG00000020247	-	97	65.373	ENSTNIG00000001692	srsf6a	56	84.865	Tetraodon_nigroviridis
ENSONIG00000020247	-	53	84.783	ENSUAMG00000003559	SRSF6	61	87.805	Ursus_americanus