EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOPRG00000000333 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Ochotona_princeps
Status: putative
Strand: Minus strand
Length: 7550 bases
Position: chrGeneScaffold_1904:77057-84606
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOPRP00000000297	LSM	PF01423.22	3.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOPRT00000000330	LSM1-201	351	-	ENSOPRP00000000297	117 (aa)	-	UPI00017778AE

Gene Model

Click here to download ENSOPRG00000000333's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOPRG00000000333's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOPRG00000000333	LSM1	63	36.000	ENSOPRG00000014809	LSM8	88	36.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOPRG00000000333	LSM1	100	94.017	ENSG00000175324	LSM1	88	94.017	Homo_sapiens
ENSOPRG00000000333	LSM1	100	79.487	ENSAPOG00000010833	lsm1	88	79.487	Acanthochromis_polyacanthus
ENSOPRG00000000333	LSM1	100	94.017	ENSAMEG00000011141	LSM1	88	94.017	Ailuropoda_melanoleuca
ENSOPRG00000000333	LSM1	52	93.443	ENSACIG00000019593	lsm1	51	93.443	Amphilophus_citrinellus
ENSOPRG00000000333	LSM1	100	79.487	ENSAOCG00000017096	lsm1	88	79.487	Amphiprion_ocellaris
ENSOPRG00000000333	LSM1	100	79.487	ENSAOCG00000017997	-	88	79.487	Amphiprion_ocellaris
ENSOPRG00000000333	LSM1	100	79.487	ENSAPEG00000011669	lsm1	88	79.487	Amphiprion_percula
ENSOPRG00000000333	LSM1	100	79.487	ENSATEG00000022266	lsm1	88	79.487	Anabas_testudineus
ENSOPRG00000000333	LSM1	100	94.017	ENSANAG00000027785	LSM1	88	94.017	Aotus_nancymaae
ENSOPRG00000000333	LSM1	100	79.487	ENSACLG00000011400	lsm1	88	79.487	Astatotilapia_calliptera
ENSOPRG00000000333	LSM1	100	82.051	ENSAMXG00000005441	lsm1	88	82.051	Astyanax_mexicanus
ENSOPRG00000000333	LSM1	100	94.872	ENSBTAG00000001612	LSM1	88	94.872	Bos_taurus
ENSOPRG00000000333	LSM1	87	52.885	WBGene00003076	lsm-1	79	52.885	Caenorhabditis_elegans
ENSOPRG00000000333	LSM1	100	94.872	ENSCJAG00000048015	LSM1	88	94.872	Callithrix_jacchus
ENSOPRG00000000333	LSM1	100	94.017	ENSCAFG00000006113	LSM1	88	94.017	Canis_familiaris
ENSOPRG00000000333	LSM1	100	94.017	ENSCAFG00020001822	LSM1	88	94.017	Canis_lupus_dingo
ENSOPRG00000000333	LSM1	100	94.017	ENSCHIG00000013194	LSM1	88	94.017	Capra_hircus
ENSOPRG00000000333	LSM1	100	94.017	ENSTSYG00000010394	LSM1	88	94.017	Carlito_syrichta
ENSOPRG00000000333	LSM1	100	94.017	ENSCPOG00000032671	LSM1	88	94.017	Cavia_porcellus
ENSOPRG00000000333	LSM1	100	94.017	ENSCCAG00000037171	LSM1	88	94.017	Cebus_capucinus
ENSOPRG00000000333	LSM1	100	94.017	ENSCATG00000020377	LSM1	88	94.017	Cercocebus_atys
ENSOPRG00000000333	LSM1	100	95.726	ENSCLAG00000001137	LSM1	88	95.726	Chinchilla_lanigera
ENSOPRG00000000333	LSM1	100	94.017	ENSCSAG00000015485	LSM1	88	94.017	Chlorocebus_sabaeus
ENSOPRG00000000333	LSM1	100	94.017	ENSCHOG00000006030	LSM1	88	94.017	Choloepus_hoffmanni
ENSOPRG00000000333	LSM1	100	93.162	ENSCPBG00000006569	LSM1	79	93.162	Chrysemys_picta_bellii
ENSOPRG00000000333	LSM1	93	66.972	ENSCING00000013536	-	82	66.972	Ciona_intestinalis
ENSOPRG00000000333	LSM1	100	94.017	ENSCANG00000019173	LSM1	88	94.017	Colobus_angolensis_palliatus
ENSOPRG00000000333	LSM1	83	81.373	ENSCGRG00001002259	-	89	81.373	Cricetulus_griseus_chok1gshd
ENSOPRG00000000333	LSM1	100	94.872	ENSCGRG00001024560	-	88	94.872	Cricetulus_griseus_chok1gshd
ENSOPRG00000000333	LSM1	100	94.872	ENSCGRG00000006554	-	88	94.872	Cricetulus_griseus_crigri
ENSOPRG00000000333	LSM1	83	81.373	ENSCGRG00000013603	-	89	81.373	Cricetulus_griseus_crigri
ENSOPRG00000000333	LSM1	100	79.487	ENSCSEG00000008319	lsm1	81	79.487	Cynoglossus_semilaevis
ENSOPRG00000000333	LSM1	100	79.487	ENSCSEG00000010570	lsm1	81	79.487	Cynoglossus_semilaevis
ENSOPRG00000000333	LSM1	100	78.632	ENSCVAG00000003871	lsm1	88	78.632	Cyprinodon_variegatus
ENSOPRG00000000333	LSM1	100	82.906	ENSDARG00000043177	lsm1	88	82.906	Danio_rerio
ENSOPRG00000000333	LSM1	100	94.017	ENSDNOG00000032911	-	88	94.017	Dasypus_novemcinctus
ENSOPRG00000000333	LSM1	99	87.931	ENSDNOG00000030989	-	87	87.931	Dasypus_novemcinctus
ENSOPRG00000000333	LSM1	87	78.431	ENSDNOG00000046620	-	86	78.431	Dasypus_novemcinctus
ENSOPRG00000000333	LSM1	100	94.017	ENSDNOG00000046387	-	88	94.017	Dasypus_novemcinctus
ENSOPRG00000000333	LSM1	100	94.017	ENSDORG00000028172	Lsm1	88	94.017	Dipodomys_ordii
ENSOPRG00000000333	LSM1	92	67.593	FBgn0261067	LSm1	79	67.593	Drosophila_melanogaster
ENSOPRG00000000333	LSM1	100	94.872	ENSEASG00005016677	LSM1	88	94.872	Equus_asinus_asinus
ENSOPRG00000000333	LSM1	100	94.872	ENSECAG00000010461	LSM1	88	94.872	Equus_caballus
ENSOPRG00000000333	LSM1	100	64.103	ENSEEUG00000015181	LSM1	84	64.103	Erinaceus_europaeus
ENSOPRG00000000333	LSM1	100	81.197	ENSELUG00000002322	lsm1	88	81.197	Esox_lucius
ENSOPRG00000000333	LSM1	100	81.197	ENSELUG00000023374	lsm1	88	81.197	Esox_lucius
ENSOPRG00000000333	LSM1	100	94.017	ENSFCAG00000039335	LSM1	88	94.017	Felis_catus
ENSOPRG00000000333	LSM1	100	94.017	ENSFALG00000006723	LSM1	99	94.017	Ficedula_albicollis
ENSOPRG00000000333	LSM1	100	94.017	ENSFDAG00000007658	LSM1	88	94.017	Fukomys_damarensis
ENSOPRG00000000333	LSM1	100	78.632	ENSFHEG00000009556	lsm1	88	78.632	Fundulus_heteroclitus
ENSOPRG00000000333	LSM1	100	78.632	ENSGMOG00000016651	lsm1	86	78.632	Gadus_morhua
ENSOPRG00000000333	LSM1	100	91.453	ENSGALG00000003245	LSM1	88	91.453	Gallus_gallus
ENSOPRG00000000333	LSM1	100	78.632	ENSGAFG00000011355	lsm1	88	78.632	Gambusia_affinis
ENSOPRG00000000333	LSM1	100	79.487	ENSGACG00000011763	lsm1	86	79.487	Gasterosteus_aculeatus
ENSOPRG00000000333	LSM1	100	93.162	ENSGAGG00000024065	LSM1	88	93.162	Gopherus_agassizii
ENSOPRG00000000333	LSM1	100	94.017	ENSGGOG00000022658	LSM1	88	94.017	Gorilla_gorilla
ENSOPRG00000000333	LSM1	100	79.487	ENSHBUG00000010897	lsm1	88	79.487	Haplochromis_burtoni
ENSOPRG00000000333	LSM1	100	94.017	ENSHGLG00000005711	LSM1	88	94.017	Heterocephalus_glaber_female
ENSOPRG00000000333	LSM1	94	83.636	ENSHGLG00000017574	-	93	83.636	Heterocephalus_glaber_female
ENSOPRG00000000333	LSM1	100	94.017	ENSHGLG00100017660	LSM1	88	94.017	Heterocephalus_glaber_male
ENSOPRG00000000333	LSM1	94	83.636	ENSHGLG00100012152	-	93	83.636	Heterocephalus_glaber_male
ENSOPRG00000000333	LSM1	100	78.632	ENSHCOG00000017233	lsm1	88	78.632	Hippocampus_comes
ENSOPRG00000000333	LSM1	100	83.761	ENSIPUG00000002312	LSM1	88	83.761	Ictalurus_punctatus
ENSOPRG00000000333	LSM1	52	100.000	ENSSTOG00000026870	LSM1	74	100.000	Ictidomys_tridecemlineatus
ENSOPRG00000000333	LSM1	100	92.308	ENSJJAG00000014605	-	88	92.308	Jaculus_jaculus
ENSOPRG00000000333	LSM1	100	79.487	ENSKMAG00000003016	lsm1	88	79.487	Kryptolebias_marmoratus
ENSOPRG00000000333	LSM1	100	79.487	ENSLBEG00000022352	lsm1	88	79.487	Labrus_bergylta
ENSOPRG00000000333	LSM1	100	88.889	ENSLACG00000010947	LSM1	97	88.889	Latimeria_chalumnae
ENSOPRG00000000333	LSM1	100	89.744	ENSLOCG00000015149	lsm1	88	89.744	Lepisosteus_oculatus
ENSOPRG00000000333	LSM1	100	94.017	ENSLAFG00000003534	LSM1	88	94.017	Loxodonta_africana
ENSOPRG00000000333	LSM1	100	94.017	ENSMFAG00000032661	LSM1	88	94.017	Macaca_fascicularis
ENSOPRG00000000333	LSM1	100	94.017	ENSMLEG00000034535	LSM1	88	94.017	Mandrillus_leucophaeus
ENSOPRG00000000333	LSM1	100	79.487	ENSMAMG00000007464	lsm1	88	79.487	Mastacembelus_armatus
ENSOPRG00000000333	LSM1	100	79.487	ENSMZEG00005010321	lsm1	88	79.487	Maylandia_zebra
ENSOPRG00000000333	LSM1	100	91.453	ENSMGAG00000002125	LSM1	88	91.453	Meleagris_gallopavo
ENSOPRG00000000333	LSM1	100	93.162	ENSMICG00000030726	LSM1	88	93.162	Microcebus_murinus
ENSOPRG00000000333	LSM1	100	94.872	ENSMOCG00000022817	Lsm1	88	94.872	Microtus_ochrogaster
ENSOPRG00000000333	LSM1	100	80.342	ENSMMOG00000015466	lsm1	88	80.342	Mola_mola
ENSOPRG00000000333	LSM1	100	93.162	ENSMODG00000010732	-	88	93.162	Monodelphis_domestica
ENSOPRG00000000333	LSM1	52	93.443	ENSMALG00000001478	lsm1	65	93.443	Monopterus_albus
ENSOPRG00000000333	LSM1	100	93.162	MGP_CAROLIEiJ_G0030930	Lsm1	88	93.162	Mus_caroli
ENSOPRG00000000333	LSM1	100	93.162	ENSMUSG00000037296	Lsm1	88	93.162	Mus_musculus
ENSOPRG00000000333	LSM1	100	93.162	MGP_PahariEiJ_G0021400	Lsm1	88	93.162	Mus_pahari
ENSOPRG00000000333	LSM1	100	93.162	MGP_SPRETEiJ_G0032049	Lsm1	88	93.162	Mus_spretus
ENSOPRG00000000333	LSM1	100	93.162	ENSMPUG00000009883	LSM1	88	93.162	Mustela_putorius_furo
ENSOPRG00000000333	LSM1	100	93.162	ENSMLUG00000003734	LSM1	88	93.162	Myotis_lucifugus
ENSOPRG00000000333	LSM1	100	93.162	ENSNGAG00000003753	Lsm1	88	93.162	Nannospalax_galili
ENSOPRG00000000333	LSM1	52	93.443	ENSNBRG00000017370	lsm1	53	93.443	Neolamprologus_brichardi
ENSOPRG00000000333	LSM1	100	94.017	ENSNLEG00000029390	LSM1	88	94.017	Nomascus_leucogenys
ENSOPRG00000000333	LSM1	100	93.162	ENSMEUG00000014077	LSM1	88	93.162	Notamacropus_eugenii
ENSOPRG00000000333	LSM1	100	94.017	ENSODEG00000004834	LSM1	88	94.017	Octodon_degus
ENSOPRG00000000333	LSM1	100	79.487	ENSONIG00000010782	lsm1	88	79.487	Oreochromis_niloticus
ENSOPRG00000000333	LSM1	100	92.308	ENSOANG00000003256	LSM1	88	92.308	Ornithorhynchus_anatinus
ENSOPRG00000000333	LSM1	100	94.017	ENSOCUG00000015399	LSM1	88	94.017	Oryctolagus_cuniculus
ENSOPRG00000000333	LSM1	100	81.197	ENSORLG00000030288	lsm1	88	81.197	Oryzias_latipes
ENSOPRG00000000333	LSM1	100	81.197	ENSORLG00020003941	lsm1	88	81.197	Oryzias_latipes_hni
ENSOPRG00000000333	LSM1	100	79.487	ENSORLG00020006213	-	76	79.487	Oryzias_latipes_hni
ENSOPRG00000000333	LSM1	100	81.197	ENSORLG00015018350	lsm1	88	81.197	Oryzias_latipes_hsok
ENSOPRG00000000333	LSM1	100	80.342	ENSOMEG00000012454	lsm1	88	80.342	Oryzias_melastigma
ENSOPRG00000000333	LSM1	100	94.017	ENSOGAG00000015161	LSM1	88	94.017	Otolemur_garnettii
ENSOPRG00000000333	LSM1	100	94.017	ENSOARG00000001317	LSM1	88	94.017	Ovis_aries
ENSOPRG00000000333	LSM1	100	94.017	ENSPPAG00000032279	LSM1	88	94.017	Pan_paniscus
ENSOPRG00000000333	LSM1	100	94.017	ENSPPRG00000014172	-	88	94.017	Panthera_pardus
ENSOPRG00000000333	LSM1	100	94.017	ENSPTIG00000010289	LSM1	88	94.017	Panthera_tigris_altaica
ENSOPRG00000000333	LSM1	100	94.017	ENSPTRG00000020169	LSM1	88	94.017	Pan_troglodytes
ENSOPRG00000000333	LSM1	100	94.017	ENSPANG00000008814	LSM1	88	94.017	Papio_anubis
ENSOPRG00000000333	LSM1	100	85.470	ENSPKIG00000001839	lsm1	88	85.470	Paramormyrops_kingsleyae
ENSOPRG00000000333	LSM1	100	80.342	ENSPKIG00000019409	LSM1	87	80.342	Paramormyrops_kingsleyae
ENSOPRG00000000333	LSM1	100	93.162	ENSPSIG00000012563	LSM1	90	93.162	Pelodiscus_sinensis
ENSOPRG00000000333	LSM1	52	93.443	ENSPMGG00000022999	lsm1	58	93.443	Periophthalmus_magnuspinnatus
ENSOPRG00000000333	LSM1	97	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSOPRG00000000333	LSM1	100	92.308	ENSPCIG00000008880	LSM1	88	92.308	Phascolarctos_cinereus
ENSOPRG00000000333	LSM1	100	78.632	ENSPFOG00000016029	lsm1	88	78.632	Poecilia_formosa
ENSOPRG00000000333	LSM1	100	78.632	ENSPLAG00000007879	lsm1	88	78.632	Poecilia_latipinna
ENSOPRG00000000333	LSM1	100	78.632	ENSPMEG00000023550	lsm1	88	78.632	Poecilia_mexicana
ENSOPRG00000000333	LSM1	100	78.632	ENSPREG00000009574	lsm1	88	78.632	Poecilia_reticulata
ENSOPRG00000000333	LSM1	100	94.017	ENSPPYG00000018521	LSM1	88	94.017	Pongo_abelii
ENSOPRG00000000333	LSM1	100	94.017	ENSPCOG00000020901	-	88	94.017	Propithecus_coquereli
ENSOPRG00000000333	LSM1	100	94.017	ENSPVAG00000006016	LSM1	88	94.017	Pteropus_vampyrus
ENSOPRG00000000333	LSM1	100	79.487	ENSPNYG00000018067	lsm1	88	79.487	Pundamilia_nyererei
ENSOPRG00000000333	LSM1	100	81.197	ENSPNAG00000013707	lsm1	88	81.197	Pygocentrus_nattereri
ENSOPRG00000000333	LSM1	100	94.017	ENSRNOG00000015375	Lsm1	88	94.017	Rattus_norvegicus
ENSOPRG00000000333	LSM1	100	94.017	ENSRBIG00000027449	LSM1	88	94.017	Rhinopithecus_bieti
ENSOPRG00000000333	LSM1	100	94.017	ENSRROG00000036074	LSM1	88	94.017	Rhinopithecus_roxellana
ENSOPRG00000000333	LSM1	91	42.342	YJL124C	LSM1	64	42.342	Saccharomyces_cerevisiae
ENSOPRG00000000333	LSM1	100	93.162	ENSSHAG00000017260	LSM1	88	93.162	Sarcophilus_harrisii
ENSOPRG00000000333	LSM1	100	86.325	ENSSFOG00015019528	lsm1	88	86.325	Scleropages_formosus
ENSOPRG00000000333	LSM1	100	79.487	ENSSMAG00000004930	lsm1	88	79.487	Scophthalmus_maximus
ENSOPRG00000000333	LSM1	100	80.342	ENSSDUG00000021823	lsm1	88	80.342	Seriola_dumerili
ENSOPRG00000000333	LSM1	100	80.342	ENSSLDG00000012154	lsm1	88	80.342	Seriola_lalandi_dorsalis
ENSOPRG00000000333	LSM1	100	93.162	ENSSPUG00000014878	LSM1	88	93.162	Sphenodon_punctatus
ENSOPRG00000000333	LSM1	100	78.632	ENSSPAG00000020548	lsm1	88	78.632	Stegastes_partitus
ENSOPRG00000000333	LSM1	100	95.726	ENSSSCG00000039058	LSM1	88	95.726	Sus_scrofa
ENSOPRG00000000333	LSM1	100	93.162	ENSTGUG00000004793	LSM1	88	93.162	Taeniopygia_guttata
ENSOPRG00000000333	LSM1	100	82.051	ENSTRUG00000025239	lsm1	88	82.051	Takifugu_rubripes
ENSOPRG00000000333	LSM1	100	82.906	ENSTNIG00000004055	lsm1	88	82.906	Tetraodon_nigroviridis
ENSOPRG00000000333	LSM1	100	93.162	ENSTBEG00000015884	LSM1	100	93.162	Tupaia_belangeri
ENSOPRG00000000333	LSM1	100	94.017	ENSTTRG00000004482	LSM1	88	94.017	Tursiops_truncatus
ENSOPRG00000000333	LSM1	100	94.017	ENSUAMG00000004103	LSM1	88	94.017	Ursus_americanus
ENSOPRG00000000333	LSM1	100	94.017	ENSUMAG00000009132	LSM1	88	94.017	Ursus_maritimus
ENSOPRG00000000333	LSM1	52	100.000	ENSVPAG00000011593	LSM1	80	100.000	Vicugna_pacos
ENSOPRG00000000333	LSM1	60	68.571	ENSVVUG00000014880	-	74	68.571	Vulpes_vulpes
ENSOPRG00000000333	LSM1	100	94.017	ENSVVUG00000020191	LSM1	88	94.017	Vulpes_vulpes
ENSOPRG00000000333	LSM1	100	88.430	ENSXETG00000009004	lsm1	88	88.430	Xenopus_tropicalis
ENSOPRG00000000333	LSM1	100	78.632	ENSXCOG00000015631	lsm1	88	78.632	Xiphophorus_couchianus
ENSOPRG00000000333	LSM1	100	78.632	ENSXMAG00000026637	lsm1	88	78.632	Xiphophorus_maculatus