EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOPRG00000000579 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ochotona_princeps
Status: putative
Strand: Minus strand
Length: 245437 bases
Position: chrGeneScaffold_2034:242764-488200
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOPRP00000000532	EST1_DNA_bind	PF10373.9	1.4e-35	1	2
ENSOPRP00000000532	EST1_DNA_bind	PF10373.9	1.4e-35	2	2
ENSOPRP00000000532	PIN_4	PF13638.6	1.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOPRT00000000583	SMG6-201	2883	-	ENSOPRP00000000532	961 (aa)	-	UPI000177855D

Gene Model

Click here to download ENSOPRG00000000579's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOPRG00000000579's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOPRG00000000579	SMG6	85	97.368	ENSG00000070366	SMG6	100	95.161	Homo_sapiens
ENSOPRG00000000579	SMG6	82	61.979	ENSAPOG00000019448	smg6	51	63.158	Acanthochromis_polyacanthus
ENSOPRG00000000579	SMG6	85	97.895	ENSAMEG00000007632	SMG6	62	91.855	Ailuropoda_melanoleuca
ENSOPRG00000000579	SMG6	87	51.770	ENSACIG00000012997	smg6	56	64.865	Amphilophus_citrinellus
ENSOPRG00000000579	SMG6	82	61.458	ENSAOCG00000002630	smg6	51	62.632	Amphiprion_ocellaris
ENSOPRG00000000579	SMG6	82	61.458	ENSAPEG00000019101	smg6	51	62.632	Amphiprion_percula
ENSOPRG00000000579	SMG6	82	62.105	ENSATEG00000006483	smg6	50	62.105	Anabas_testudineus
ENSOPRG00000000579	SMG6	67	76.471	ENSACAG00000011783	SMG6	55	76.471	Anolis_carolinensis
ENSOPRG00000000579	SMG6	84	96.842	ENSANAG00000035760	SMG6	64	90.000	Aotus_nancymaae
ENSOPRG00000000579	SMG6	79	63.978	ENSACLG00000005288	smg6	55	63.784	Astatotilapia_calliptera
ENSOPRG00000000579	SMG6	81	63.077	ENSAMXG00000017326	smg6	57	63.934	Astyanax_mexicanus
ENSOPRG00000000579	SMG6	85	96.316	ENSBTAG00000000267	SMG6	62	91.855	Bos_taurus
ENSOPRG00000000579	SMG6	91	89.545	ENSCJAG00000001820	SMG6	62	89.545	Callithrix_jacchus
ENSOPRG00000000579	SMG6	85	97.895	ENSCAFG00000019260	SMG6	62	90.498	Canis_familiaris
ENSOPRG00000000579	SMG6	85	97.895	ENSCAFG00020009770	SMG6	62	90.498	Canis_lupus_dingo
ENSOPRG00000000579	SMG6	85	96.842	ENSCHIG00000021998	SMG6	62	90.045	Capra_hircus
ENSOPRG00000000579	SMG6	85	97.895	ENSTSYG00000003406	SMG6	92	83.547	Carlito_syrichta
ENSOPRG00000000579	SMG6	85	97.980	ENSCAPG00000016197	SMG6	57	97.980	Cavia_aperea
ENSOPRG00000000579	SMG6	85	97.895	ENSCPOG00000014878	SMG6	73	88.953	Cavia_porcellus
ENSOPRG00000000579	SMG6	84	96.842	ENSCCAG00000035801	SMG6	62	90.455	Cebus_capucinus
ENSOPRG00000000579	SMG6	85	97.368	ENSCATG00000031956	SMG6	62	90.498	Cercocebus_atys
ENSOPRG00000000579	SMG6	85	97.368	ENSCLAG00000006748	SMG6	71	92.262	Chinchilla_lanigera
ENSOPRG00000000579	SMG6	85	97.368	ENSCSAG00000013800	SMG6	62	90.950	Chlorocebus_sabaeus
ENSOPRG00000000579	SMG6	91	74.208	ENSCPBG00000020369	SMG6	62	77.828	Chrysemys_picta_bellii
ENSOPRG00000000579	SMG6	85	97.368	ENSCANG00000031764	SMG6	92	83.761	Colobus_angolensis_palliatus
ENSOPRG00000000579	SMG6	83	90.431	ENSCGRG00000007782	Smg6	62	90.045	Cricetulus_griseus_crigri
ENSOPRG00000000579	SMG6	81	57.143	ENSCSEG00000012757	smg6	54	67.614	Cynoglossus_semilaevis
ENSOPRG00000000579	SMG6	79	62.500	ENSCVAG00000012789	smg6	51	62.304	Cyprinodon_variegatus
ENSOPRG00000000579	SMG6	81	61.836	ENSDARG00000100481	smg6	52	65.922	Danio_rerio
ENSOPRG00000000579	SMG6	85	97.368	ENSDNOG00000048283	SMG6	62	90.950	Dasypus_novemcinctus
ENSOPRG00000000579	SMG6	74	98.421	ENSDORG00000016614	Smg6	69	94.479	Dipodomys_ordii
ENSOPRG00000000579	SMG6	57	30.857	FBgn0039260	Smg6	55	31.214	Drosophila_melanogaster
ENSOPRG00000000579	SMG6	85	97.895	ENSEASG00005009318	SMG6	62	92.308	Equus_asinus_asinus
ENSOPRG00000000579	SMG6	85	97.895	ENSECAG00000006519	SMG6	62	92.760	Equus_caballus
ENSOPRG00000000579	SMG6	74	96.316	ENSEEUG00000003493	SMG6	55	88.688	Erinaceus_europaeus
ENSOPRG00000000579	SMG6	85	98.421	ENSFCAG00000028817	SMG6	62	92.308	Felis_catus
ENSOPRG00000000579	SMG6	91	76.364	ENSFALG00000006538	SMG6	63	76.364	Ficedula_albicollis
ENSOPRG00000000579	SMG6	85	98.421	ENSFDAG00000015106	SMG6	71	89.412	Fukomys_damarensis
ENSOPRG00000000579	SMG6	79	62.500	ENSFHEG00000013282	smg6	52	62.304	Fundulus_heteroclitus
ENSOPRG00000000579	SMG6	91	76.364	ENSGALG00000003108	SMG6	56	82.828	Gallus_gallus
ENSOPRG00000000579	SMG6	79	63.021	ENSGAFG00000000379	smg6	51	62.827	Gambusia_affinis
ENSOPRG00000000579	SMG6	91	51.026	ENSGACG00000020521	smg6	63	66.667	Gasterosteus_aculeatus
ENSOPRG00000000579	SMG6	91	73.303	ENSGAGG00000025617	SMG6	63	76.923	Gopherus_agassizii
ENSOPRG00000000579	SMG6	85	97.368	ENSGGOG00000017156	SMG6	62	91.855	Gorilla_gorilla
ENSOPRG00000000579	SMG6	79	63.978	ENSHBUG00000021311	smg6	51	63.784	Haplochromis_burtoni
ENSOPRG00000000579	SMG6	85	98.421	ENSHGLG00000012882	SMG6	71	90.000	Heterocephalus_glaber_female
ENSOPRG00000000579	SMG6	85	98.421	ENSHGLG00100017815	SMG6	71	90.000	Heterocephalus_glaber_male
ENSOPRG00000000579	SMG6	82	61.290	ENSHCOG00000008761	smg6	65	61.749	Hippocampus_comes
ENSOPRG00000000579	SMG6	87	51.912	ENSIPUG00000012493	smg6	51	65.193	Ictalurus_punctatus
ENSOPRG00000000579	SMG6	84	98.947	ENSSTOG00000028127	SMG6	72	91.176	Ictidomys_tridecemlineatus
ENSOPRG00000000579	SMG6	65	89.140	ENSJJAG00000015367	Smg6	52	89.140	Jaculus_jaculus
ENSOPRG00000000579	SMG6	81	60.287	ENSKMAG00000000279	smg6	51	61.856	Kryptolebias_marmoratus
ENSOPRG00000000579	SMG6	87	49.145	ENSLBEG00000002184	smg6	50	60.622	Labrus_bergylta
ENSOPRG00000000579	SMG6	80	72.131	ENSLOCG00000006448	smg6	58	71.751	Lepisosteus_oculatus
ENSOPRG00000000579	SMG6	85	97.368	ENSLAFG00000001261	SMG6	62	91.855	Loxodonta_africana
ENSOPRG00000000579	SMG6	85	97.368	ENSMFAG00000003394	SMG6	62	90.950	Macaca_fascicularis
ENSOPRG00000000579	SMG6	85	97.368	ENSMMUG00000023161	SMG6	62	90.950	Macaca_mulatta
ENSOPRG00000000579	SMG6	85	97.368	ENSMNEG00000044592	SMG6	57	98.387	Macaca_nemestrina
ENSOPRG00000000579	SMG6	85	97.368	ENSMLEG00000029353	SMG6	59	98.387	Mandrillus_leucophaeus
ENSOPRG00000000579	SMG6	83	62.245	ENSMAMG00000020119	smg6	55	62.371	Mastacembelus_armatus
ENSOPRG00000000579	SMG6	79	63.978	ENSMZEG00005024736	smg6	51	63.784	Maylandia_zebra
ENSOPRG00000000579	SMG6	57	75.909	ENSMGAG00000005401	-	52	75.909	Meleagris_gallopavo
ENSOPRG00000000579	SMG6	85	98.421	ENSMICG00000012913	SMG6	62	93.213	Microcebus_murinus
ENSOPRG00000000579	SMG6	83	67.598	ENSMMOG00000010883	smg6	54	67.598	Mola_mola
ENSOPRG00000000579	SMG6	92	85.068	ENSMODG00000010622	SMG6	62	85.068	Monodelphis_domestica
ENSOPRG00000000579	SMG6	82	61.458	ENSMALG00000001106	smg6	51	61.140	Monopterus_albus
ENSOPRG00000000579	SMG6	83	98.421	MGP_CAROLIEiJ_G0016729	Smg6	71	89.412	Mus_caroli
ENSOPRG00000000579	SMG6	83	98.421	ENSMUSG00000038290	Smg6	71	90.000	Mus_musculus
ENSOPRG00000000579	SMG6	83	98.421	MGP_PahariEiJ_G0017866	Smg6	71	90.000	Mus_pahari
ENSOPRG00000000579	SMG6	83	98.421	MGP_SPRETEiJ_G0017572	Smg6	72	88.953	Mus_spretus
ENSOPRG00000000579	SMG6	85	98.421	ENSMPUG00000013046	SMG6	62	92.308	Mustela_putorius_furo
ENSOPRG00000000579	SMG6	85	97.368	ENSMLUG00000005739	SMG6	62	92.760	Myotis_lucifugus
ENSOPRG00000000579	SMG6	84	96.316	ENSNGAG00000007287	Smg6	75	84.831	Nannospalax_galili
ENSOPRG00000000579	SMG6	79	63.441	ENSNBRG00000009511	smg6	55	62.703	Neolamprologus_brichardi
ENSOPRG00000000579	SMG6	85	97.368	ENSNLEG00000017171	SMG6	92	84.188	Nomascus_leucogenys
ENSOPRG00000000579	SMG6	92	78.452	ENSMEUG00000015804	SMG6	63	78.452	Notamacropus_eugenii
ENSOPRG00000000579	SMG6	74	97.368	ENSODEG00000008038	SMG6	83	91.566	Octodon_degus
ENSOPRG00000000579	SMG6	79	63.441	ENSONIG00000005594	smg6	58	63.243	Oreochromis_niloticus
ENSOPRG00000000579	SMG6	85	98.947	ENSOCUG00000013018	SMG6	62	93.665	Oryctolagus_cuniculus
ENSOPRG00000000579	SMG6	83	59.596	ENSORLG00000003317	smg6	51	60.622	Oryzias_latipes
ENSOPRG00000000579	SMG6	83	59.091	ENSORLG00020015343	smg6	52	60.104	Oryzias_latipes_hni
ENSOPRG00000000579	SMG6	83	58.586	ENSORLG00015020454	smg6	51	59.585	Oryzias_latipes_hsok
ENSOPRG00000000579	SMG6	80	60.101	ENSOMEG00000010838	smg6	52	60.622	Oryzias_melastigma
ENSOPRG00000000579	SMG6	85	97.368	ENSOGAG00000004483	SMG6	62	91.441	Otolemur_garnettii
ENSOPRG00000000579	SMG6	85	96.316	ENSOARG00000015076	SMG6	64	90.498	Ovis_aries
ENSOPRG00000000579	SMG6	85	97.368	ENSPPAG00000043296	SMG6	62	91.403	Pan_paniscus
ENSOPRG00000000579	SMG6	85	98.421	ENSPPRG00000014581	SMG6	62	92.308	Panthera_pardus
ENSOPRG00000000579	SMG6	85	98.421	ENSPTIG00000008925	SMG6	92	83.761	Panthera_tigris_altaica
ENSOPRG00000000579	SMG6	85	97.368	ENSPTRG00000008544	SMG6	92	83.974	Pan_troglodytes
ENSOPRG00000000579	SMG6	85	97.368	ENSPANG00000024588	SMG6	62	90.950	Papio_anubis
ENSOPRG00000000579	SMG6	82	74.208	ENSPSIG00000006660	SMG6	60	76.018	Pelodiscus_sinensis
ENSOPRG00000000579	SMG6	81	55.607	ENSPMGG00000000844	smg6	57	60.106	Periophthalmus_magnuspinnatus
ENSOPRG00000000579	SMG6	85	98.421	ENSPEMG00000020707	Smg6	73	90.000	Peromyscus_maniculatus_bairdii
ENSOPRG00000000579	SMG6	87	52.041	ENSPFOG00000012035	smg6	57	66.854	Poecilia_formosa
ENSOPRG00000000579	SMG6	79	62.500	ENSPLAG00000017660	smg6	52	62.304	Poecilia_latipinna
ENSOPRG00000000579	SMG6	87	50.857	ENSPMEG00000000258	smg6	52	62.304	Poecilia_mexicana
ENSOPRG00000000579	SMG6	79	62.304	ENSPREG00000010066	smg6	52	62.304	Poecilia_reticulata
ENSOPRG00000000579	SMG6	82	97.368	ENSPPYG00000007790	SMG6	57	97.475	Pongo_abelii
ENSOPRG00000000579	SMG6	84	96.842	ENSPCAG00000000552	SMG6	58	96.970	Procavia_capensis
ENSOPRG00000000579	SMG6	85	97.895	ENSPCOG00000020925	SMG6	62	92.308	Propithecus_coquereli
ENSOPRG00000000579	SMG6	83	97.368	ENSPVAG00000002159	SMG6	61	91.787	Pteropus_vampyrus
ENSOPRG00000000579	SMG6	81	64.103	ENSPNYG00000024151	smg6	54	67.241	Pundamilia_nyererei
ENSOPRG00000000579	SMG6	83	98.421	ENSRNOG00000003041	Smg6	73	85.556	Rattus_norvegicus
ENSOPRG00000000579	SMG6	85	96.842	ENSRBIG00000024746	SMG6	62	90.498	Rhinopithecus_bieti
ENSOPRG00000000579	SMG6	85	96.842	ENSRROG00000030423	SMG6	92	83.547	Rhinopithecus_roxellana
ENSOPRG00000000579	SMG6	84	96.842	ENSSBOG00000022518	SMG6	61	90.909	Saimiri_boliviensis_boliviensis
ENSOPRG00000000579	SMG6	92	84.163	ENSSHAG00000010045	SMG6	62	84.163	Sarcophilus_harrisii
ENSOPRG00000000579	SMG6	79	58.376	ENSSMAG00000019777	smg6	50	59.067	Scophthalmus_maximus
ENSOPRG00000000579	SMG6	82	63.021	ENSSDUG00000016412	smg6	51	62.694	Seriola_dumerili
ENSOPRG00000000579	SMG6	82	62.500	ENSSLDG00000020747	smg6	55	62.176	Seriola_lalandi_dorsalis
ENSOPRG00000000579	SMG6	91	70.089	ENSSPUG00000007152	SMG6	56	81.818	Sphenodon_punctatus
ENSOPRG00000000579	SMG6	82	61.979	ENSSPAG00000015633	smg6	51	62.827	Stegastes_partitus
ENSOPRG00000000579	SMG6	85	98.421	ENSSSCG00000017826	SMG6	65	92.308	Sus_scrofa
ENSOPRG00000000579	SMG6	91	76.364	ENSTGUG00000005836	SMG6	63	76.364	Taeniopygia_guttata
ENSOPRG00000000579	SMG6	81	58.768	ENSTRUG00000000358	smg6	56	62.032	Takifugu_rubripes
ENSOPRG00000000579	SMG6	79	65.957	ENSTNIG00000016164	smg6	57	65.775	Tetraodon_nigroviridis
ENSOPRG00000000579	SMG6	85	98.947	ENSTBEG00000011424	SMG6	62	91.855	Tupaia_belangeri
ENSOPRG00000000579	SMG6	79	95.263	ENSTTRG00000001175	SMG6	59	92.488	Tursiops_truncatus
ENSOPRG00000000579	SMG6	85	98.485	ENSUAMG00000025152	SMG6	59	98.485	Ursus_americanus
ENSOPRG00000000579	SMG6	85	98.421	ENSUMAG00000009306	SMG6	64	92.760	Ursus_maritimus
ENSOPRG00000000579	SMG6	85	97.895	ENSVVUG00000021727	SMG6	64	90.498	Vulpes_vulpes
ENSOPRG00000000579	SMG6	81	69.192	ENSXETG00000023799	SMG6	57	69.192	Xenopus_tropicalis
ENSOPRG00000000579	SMG6	87	51.407	ENSXCOG00000009867	smg6	52	66.111	Xiphophorus_couchianus
ENSOPRG00000000579	SMG6	79	63.021	ENSXMAG00000010321	smg6	51	62.827	Xiphophorus_maculatus