EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSOPRG00000002443 (Gene tree)
Gene ID
-
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Ochotona_princeps
Status
putative
Strand
Minus strand
Length
1903 bases
Position
chrGeneScaffold_3124:495119-497021
Accession
17162
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSOPRP00000002250LSMPF01423.221.1e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSOPRT00000002432LSM5-201228-ENSOPRP0000000225075 (aa)-UPI00017786FE
Gene Model
Click here to download ENSOPRG00000002443's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSOPRG00000002443's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSOPRG00000002443LSM57936.066ENSOPRG00000015415-6436.066
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSOPRG00000002443LSM5100100.000ENSG00000106355LSM5100100.000Homo_sapiens
ENSOPRG00000002443LSM510097.333ENSAPOG00000020779LSM58297.333Acanthochromis_polyacanthus
ENSOPRG00000002443LSM58896.970ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSOPRG00000002443LSM5100100.000ENSAMEG00000006700LSM582100.000Ailuropoda_melanoleuca
ENSOPRG00000002443LSM56093.333ENSACIG00000019185lsm58093.333Amphilophus_citrinellus
ENSOPRG00000002443LSM510097.333ENSAOCG00000001636lsm58297.333Amphiprion_ocellaris
ENSOPRG00000002443LSM58396.774ENSAPEG00000008201lsm510096.774Amphiprion_percula
ENSOPRG00000002443LSM510097.333ENSAPEG00000008151lsm58297.333Amphiprion_percula
ENSOPRG00000002443LSM58896.970ENSATEG00000020470lsm57693.333Anabas_testudineus
ENSOPRG00000002443LSM597100.000ENSAPLG00000008171LSM599100.000Anas_platyrhynchos
ENSOPRG00000002443LSM553100.000ENSACAG00000009530LSM567100.000Anolis_carolinensis
ENSOPRG00000002443LSM510096.000ENSANAG00000024192-7896.000Aotus_nancymaae
ENSOPRG00000002443LSM58790.769ENSANAG00000037758-8190.769Aotus_nancymaae
ENSOPRG00000002443LSM5100100.000ENSANAG00000034409-82100.000Aotus_nancymaae
ENSOPRG00000002443LSM510097.333ENSACLG00000012891lsm58597.333Astatotilapia_calliptera
ENSOPRG00000002443LSM510082.051ENSAMXG00000035543lsm58382.051Astyanax_mexicanus
ENSOPRG00000002443LSM5100100.000ENSBTAG00000002332LSM582100.000Bos_taurus
ENSOPRG00000002443LSM510076.000WBGene00003079lsm-58276.000Caenorhabditis_elegans
ENSOPRG00000002443LSM510088.000ENSCJAG00000005678-8388.000Callithrix_jacchus
ENSOPRG00000002443LSM5100100.000ENSCJAG00000047379LSM55688.889Callithrix_jacchus
ENSOPRG00000002443LSM510098.667ENSCAFG00000019261-8298.667Canis_familiaris
ENSOPRG00000002443LSM5100100.000ENSCAFG00020004946LSM582100.000Canis_lupus_dingo
ENSOPRG00000002443LSM57777.586ENSCHIG00000021428-7773.611Capra_hircus
ENSOPRG00000002443LSM5100100.000ENSCHIG00000024539LSM582100.000Capra_hircus
ENSOPRG00000002443LSM510097.333ENSCHIG00000004079-8297.333Capra_hircus
ENSOPRG00000002443LSM5100100.000ENSTSYG00000006449-82100.000Carlito_syrichta
ENSOPRG00000002443LSM510085.333ENSTSYG00000028728-8185.333Carlito_syrichta
ENSOPRG00000002443LSM59188.235ENSTSYG00000026530-7488.235Carlito_syrichta
ENSOPRG00000002443LSM510069.333ENSTSYG00000036637-7869.333Carlito_syrichta
ENSOPRG00000002443LSM510092.000ENSCAPG00000006980LSM510092.000Cavia_aperea
ENSOPRG00000002443LSM5100100.000ENSCPOG00000036386LSM582100.000Cavia_porcellus
ENSOPRG00000002443LSM59177.941ENSCCAG00000037334-8877.941Cebus_capucinus
ENSOPRG00000002443LSM5100100.000ENSCCAG00000037808-82100.000Cebus_capucinus
ENSOPRG00000002443LSM510098.667ENSCCAG00000032123-8298.667Cebus_capucinus
ENSOPRG00000002443LSM58793.846ENSCCAG00000032792-8193.846Cebus_capucinus
ENSOPRG00000002443LSM510098.667ENSCCAG00000000821-8298.667Cebus_capucinus
ENSOPRG00000002443LSM5100100.000ENSCATG00000040218LSM5100100.000Cercocebus_atys
ENSOPRG00000002443LSM510086.667ENSCATG00000014790-8286.667Cercocebus_atys
ENSOPRG00000002443LSM5100100.000ENSCLAG00000000202LSM582100.000Chinchilla_lanigera
ENSOPRG00000002443LSM510084.000ENSCLAG00000005062-7484.000Chinchilla_lanigera
ENSOPRG00000002443LSM579100.000ENSCHOG00000005335LSM578100.000Choloepus_hoffmanni
ENSOPRG00000002443LSM5100100.000ENSCPBG00000013685LSM582100.000Chrysemys_picta_bellii
ENSOPRG00000002443LSM510089.333ENSCING00000020625-8489.333Ciona_intestinalis
ENSOPRG00000002443LSM510089.333ENSCSAVG00000001439-8589.333Ciona_savignyi
ENSOPRG00000002443LSM5100100.000ENSCANG00000039909LSM5100100.000Colobus_angolensis_palliatus
ENSOPRG00000002443LSM5100100.000ENSCGRG00001015461Lsm582100.000Cricetulus_griseus_chok1gshd
ENSOPRG00000002443LSM5100100.000ENSCGRG00000007677Lsm5100100.000Cricetulus_griseus_crigri
ENSOPRG00000002443LSM56093.333ENSCSEG00000015286lsm57693.333Cynoglossus_semilaevis
ENSOPRG00000002443LSM510097.333ENSCVAG00000004262lsm58497.333Cyprinodon_variegatus
ENSOPRG00000002443LSM510097.333ENSDARG00000071573lsm510096.774Danio_rerio
ENSOPRG00000002443LSM5100100.000ENSDNOG00000034958LSM582100.000Dasypus_novemcinctus
ENSOPRG00000002443LSM59587.324ENSDNOG00000049495-7887.324Dasypus_novemcinctus
ENSOPRG00000002443LSM5100100.000ENSDORG00000009422Lsm582100.000Dipodomys_ordii
ENSOPRG00000002443LSM59986.486FBgn0035675CG66108186.486Drosophila_melanogaster
ENSOPRG00000002443LSM59663.889ENSETEG00000000777-7864.384Echinops_telfairi
ENSOPRG00000002443LSM5100100.000ENSETEG00000018068LSM582100.000Echinops_telfairi
ENSOPRG00000002443LSM59981.081ENSETEG00000016074-9881.081Echinops_telfairi
ENSOPRG00000002443LSM510078.667ENSETEG00000001469-8078.667Echinops_telfairi
ENSOPRG00000002443LSM510080.000ENSETEG00000010651-8180.000Echinops_telfairi
ENSOPRG00000002443LSM510093.333ENSEBUG00000008540lsm58293.333Eptatretus_burgeri
ENSOPRG00000002443LSM5100100.000ENSEASG00005003500LSM582100.000Equus_asinus_asinus
ENSOPRG00000002443LSM510082.667ENSECAG00000018445LSM58082.667Equus_caballus
ENSOPRG00000002443LSM57694.737ENSEEUG00000004102LSM59594.737Erinaceus_europaeus
ENSOPRG00000002443LSM510097.333ENSELUG00000007792lsm58297.333Esox_lucius
ENSOPRG00000002443LSM5100100.000ENSFCAG00000000230LSM582100.000Felis_catus
ENSOPRG00000002443LSM5100100.000ENSFALG00000001892LSM590100.000Ficedula_albicollis
ENSOPRG00000002443LSM510068.000ENSFDAG00000008685-8868.000Fukomys_damarensis
ENSOPRG00000002443LSM5100100.000ENSFDAG00000008767LSM582100.000Fukomys_damarensis
ENSOPRG00000002443LSM510085.333ENSFHEG00000004011lsm58185.333Fundulus_heteroclitus
ENSOPRG00000002443LSM59997.297ENSGMOG00000018235lsm58297.297Gadus_morhua
ENSOPRG00000002443LSM5100100.000ENSGALG00000041625LSM582100.000Gallus_gallus
ENSOPRG00000002443LSM58396.774ENSGAFG00000016824lsm510096.774Gambusia_affinis
ENSOPRG00000002443LSM510097.333ENSGACG00000005528lsm58297.333Gasterosteus_aculeatus
ENSOPRG00000002443LSM5100100.000ENSGAGG00000015593LSM582100.000Gopherus_agassizii
ENSOPRG00000002443LSM5100100.000ENSGGOG00000043469LSM582100.000Gorilla_gorilla
ENSOPRG00000002443LSM510097.333ENSHBUG00000013773lsm58597.333Haplochromis_burtoni
ENSOPRG00000002443LSM5100100.000ENSHGLG00000011765LSM582100.000Heterocephalus_glaber_female
ENSOPRG00000002443LSM5100100.000ENSHGLG00100015610LSM584100.000Heterocephalus_glaber_male
ENSOPRG00000002443LSM56091.111ENSHCOG00000008288lsm57691.111Hippocampus_comes
ENSOPRG00000002443LSM510097.333ENSIPUG00000021095LSM58297.333Ictalurus_punctatus
ENSOPRG00000002443LSM510085.333ENSSTOG00000033886-8485.333Ictidomys_tridecemlineatus
ENSOPRG00000002443LSM5100100.000ENSSTOG00000012662LSM582100.000Ictidomys_tridecemlineatus
ENSOPRG00000002443LSM58379.032ENSJJAG00000016144-7579.032Jaculus_jaculus
ENSOPRG00000002443LSM58493.651ENSJJAG00000004475-8093.651Jaculus_jaculus
ENSOPRG00000002443LSM5100100.000ENSJJAG00000012145-82100.000Jaculus_jaculus
ENSOPRG00000002443LSM510096.000ENSKMAG00000021861lsm58296.000Kryptolebias_marmoratus
ENSOPRG00000002443LSM55380.000ENSLBEG00000017379lsm56680.000Labrus_bergylta
ENSOPRG00000002443LSM510088.000ENSLBEG00000009235LSM55788.000Labrus_bergylta
ENSOPRG00000002443LSM510096.000ENSLACG00000022448LSM58296.000Latimeria_chalumnae
ENSOPRG00000002443LSM510097.333ENSLOCG00000012903lsm58297.333Lepisosteus_oculatus
ENSOPRG00000002443LSM5100100.000ENSLAFG00000029579LSM582100.000Loxodonta_africana
ENSOPRG00000002443LSM510073.333ENSLAFG00000027938-8073.333Loxodonta_africana
ENSOPRG00000002443LSM5100100.000ENSMFAG00000038508LSM582100.000Macaca_fascicularis
ENSOPRG00000002443LSM510097.333ENSMFAG00000030152-8297.333Macaca_fascicularis
ENSOPRG00000002443LSM510097.333ENSMMUG00000030131-8297.333Macaca_mulatta
ENSOPRG00000002443LSM510088.000ENSMMUG00000039822-8288.000Macaca_mulatta
ENSOPRG00000002443LSM5100100.000ENSMNEG00000015331LSM5100100.000Macaca_nemestrina
ENSOPRG00000002443LSM510097.333ENSMNEG00000037935-8297.333Macaca_nemestrina
ENSOPRG00000002443LSM5100100.000ENSMLEG00000024945LSM582100.000Mandrillus_leucophaeus
ENSOPRG00000002443LSM510086.667ENSMLEG00000034037-8386.667Mandrillus_leucophaeus
ENSOPRG00000002443LSM510093.333ENSMAMG00000012869lsm58293.333Mastacembelus_armatus
ENSOPRG00000002443LSM510097.333ENSMZEG00005019554lsm58597.333Maylandia_zebra
ENSOPRG00000002443LSM5100100.000ENSMGAG00000012117LSM582100.000Meleagris_gallopavo
ENSOPRG00000002443LSM5100100.000ENSMAUG00000012222Lsm582100.000Mesocricetus_auratus
ENSOPRG00000002443LSM5100100.000ENSMAUG00000008132-82100.000Mesocricetus_auratus
ENSOPRG00000002443LSM5100100.000ENSMICG00000005353LSM582100.000Microcebus_murinus
ENSOPRG00000002443LSM58789.231ENSMICG00000033928-8489.231Microcebus_murinus
ENSOPRG00000002443LSM5100100.000ENSMOCG00000012018Lsm582100.000Microtus_ochrogaster
ENSOPRG00000002443LSM510097.333ENSMMOG00000004026lsm58697.333Mola_mola
ENSOPRG00000002443LSM583100.000ENSMODG00000013274-100100.000Monodelphis_domestica
ENSOPRG00000002443LSM58391.935ENSMALG00000010343lsm510091.935Monopterus_albus
ENSOPRG00000002443LSM5100100.000MGP_CAROLIEiJ_G0028421Lsm582100.000Mus_caroli
ENSOPRG00000002443LSM5100100.000ENSMUSG00000091625Lsm582100.000Mus_musculus
ENSOPRG00000002443LSM5100100.000MGP_PahariEiJ_G0022171Lsm582100.000Mus_pahari
ENSOPRG00000002443LSM5100100.000MGP_SPRETEiJ_G0029423Lsm582100.000Mus_spretus
ENSOPRG00000002443LSM5100100.000ENSMLUG00000017028LSM582100.000Myotis_lucifugus
ENSOPRG00000002443LSM510076.000ENSNGAG00000022569-7876.000Nannospalax_galili
ENSOPRG00000002443LSM5100100.000ENSNGAG00000024142Lsm582100.000Nannospalax_galili
ENSOPRG00000002443LSM510087.013ENSNGAG00000017707-8287.013Nannospalax_galili
ENSOPRG00000002443LSM57696.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSOPRG00000002443LSM5100100.000ENSNLEG00000015268LSM582100.000Nomascus_leucogenys
ENSOPRG00000002443LSM5100100.000ENSODEG00000019072-82100.000Octodon_degus
ENSOPRG00000002443LSM5100100.000ENSODEG00000008258-82100.000Octodon_degus
ENSOPRG00000002443LSM59560.563ENSOANG00000014540-9560.563Ornithorhynchus_anatinus
ENSOPRG00000002443LSM5100100.000ENSOCUG00000029043LSM582100.000Oryctolagus_cuniculus
ENSOPRG00000002443LSM510096.000ENSORLG00020003019lsm57896.000Oryzias_latipes_hni
ENSOPRG00000002443LSM510096.000ENSORLG00015003338lsm58296.000Oryzias_latipes_hsok
ENSOPRG00000002443LSM510096.000ENSOMEG00000001078lsm58296.000Oryzias_melastigma
ENSOPRG00000002443LSM5100100.000ENSOGAG00000013892LSM582100.000Otolemur_garnettii
ENSOPRG00000002443LSM5100100.000ENSOARG00000006944LSM582100.000Ovis_aries
ENSOPRG00000002443LSM5100100.000ENSPPAG00000003697-82100.000Pan_paniscus
ENSOPRG00000002443LSM5100100.000ENSPPRG00000002550LSM582100.000Panthera_pardus
ENSOPRG00000002443LSM5100100.000ENSPTIG00000015604LSM582100.000Panthera_tigris_altaica
ENSOPRG00000002443LSM510080.000ENSPTRG00000049488-8282.667Pan_troglodytes
ENSOPRG00000002443LSM5100100.000ENSPTRG00000019057LSM582100.000Pan_troglodytes
ENSOPRG00000002443LSM510097.333ENSPANG00000033477-8297.333Papio_anubis
ENSOPRG00000002443LSM5100100.000ENSPANG00000032179-82100.000Papio_anubis
ENSOPRG00000002443LSM510088.000ENSPANG00000032538-8288.000Papio_anubis
ENSOPRG00000002443LSM510097.333ENSPKIG00000011910lsm58297.333Paramormyrops_kingsleyae
ENSOPRG00000002443LSM597100.000ENSPSIG00000014796LSM599100.000Pelodiscus_sinensis
ENSOPRG00000002443LSM58396.774ENSPMGG00000011699lsm510096.774Periophthalmus_magnuspinnatus
ENSOPRG00000002443LSM510073.333ENSPEMG00000022375-8073.333Peromyscus_maniculatus_bairdii
ENSOPRG00000002443LSM510097.333ENSPFOG00000001433lsm58297.333Poecilia_formosa
ENSOPRG00000002443LSM510097.333ENSPLAG00000009665lsm58297.333Poecilia_latipinna
ENSOPRG00000002443LSM510097.333ENSPMEG00000022265lsm58297.333Poecilia_mexicana
ENSOPRG00000002443LSM58396.774ENSPREG00000022452lsm510096.774Poecilia_reticulata
ENSOPRG00000002443LSM510096.000ENSPPYG00000017661LSM58296.000Pongo_abelii
ENSOPRG00000002443LSM587100.000ENSPCAG00000013740LSM580100.000Procavia_capensis
ENSOPRG00000002443LSM5100100.000ENSPVAG00000009786LSM582100.000Pteropus_vampyrus
ENSOPRG00000002443LSM510097.333ENSPNYG00000022236lsm58597.333Pundamilia_nyererei
ENSOPRG00000002443LSM510097.333ENSPNAG00000001887lsm58297.333Pygocentrus_nattereri
ENSOPRG00000002443LSM510097.368ENSRNOG00000027305AABR07065089.18397.368Rattus_norvegicus
ENSOPRG00000002443LSM5100100.000ENSRNOG00000042126Lsm582100.000Rattus_norvegicus
ENSOPRG00000002443LSM5100100.000ENSRBIG00000030340-82100.000Rhinopithecus_bieti
ENSOPRG00000002443LSM5100100.000ENSRBIG00000030714-82100.000Rhinopithecus_bieti
ENSOPRG00000002443LSM510098.667ENSRBIG00000024431-8298.667Rhinopithecus_bieti
ENSOPRG00000002443LSM5100100.000ENSRBIG00000027803-100100.000Rhinopithecus_bieti
ENSOPRG00000002443LSM5100100.000ENSRROG00000004655-82100.000Rhinopithecus_roxellana
ENSOPRG00000002443LSM5100100.000ENSRROG00000023884-82100.000Rhinopithecus_roxellana
ENSOPRG00000002443LSM5100100.000ENSRROG00000042782-100100.000Rhinopithecus_roxellana
ENSOPRG00000002443LSM59550.000YER146W-8250.000Saccharomyces_cerevisiae
ENSOPRG00000002443LSM5100100.000ENSSBOG00000012312LSM582100.000Saimiri_boliviensis_boliviensis
ENSOPRG00000002443LSM510098.667ENSSBOG00000019124-8298.667Saimiri_boliviensis_boliviensis
ENSOPRG00000002443LSM58789.231ENSSBOG00000034794-8189.231Saimiri_boliviensis_boliviensis
ENSOPRG00000002443LSM510097.333ENSSFOG00015010099lsm58297.333Scleropages_formosus
ENSOPRG00000002443LSM56093.333ENSSMAG00000007895lsm57693.333Scophthalmus_maximus
ENSOPRG00000002443LSM58396.774ENSSDUG00000010762lsm510096.774Seriola_dumerili
ENSOPRG00000002443LSM59578.873ENSSLDG00000008014-8578.873Seriola_lalandi_dorsalis
ENSOPRG00000002443LSM510097.333ENSSLDG00000025242lsm58297.333Seriola_lalandi_dorsalis
ENSOPRG00000002443LSM510066.667ENSSARG00000003330LSM58266.667Sorex_araneus
ENSOPRG00000002443LSM510098.667ENSSPUG00000002690LSM510098.387Sphenodon_punctatus
ENSOPRG00000002443LSM56093.333ENSSPAG00000005435lsm57693.333Stegastes_partitus
ENSOPRG00000002443LSM56890.196ENSSSCG00000029661-7488.679Sus_scrofa
ENSOPRG00000002443LSM5100100.000ENSSSCG00000026064-82100.000Sus_scrofa
ENSOPRG00000002443LSM5100100.000ENSTGUG00000017539LSM582100.000Taeniopygia_guttata
ENSOPRG00000002443LSM58887.324ENSTRUG00000017749lsm55587.324Takifugu_rubripes
ENSOPRG00000002443LSM510096.000ENSTNIG00000008695lsm58596.000Tetraodon_nigroviridis
ENSOPRG00000002443LSM5100100.000ENSTBEG00000004876LSM582100.000Tupaia_belangeri
ENSOPRG00000002443LSM5100100.000ENSTTRG00000004237LSM582100.000Tursiops_truncatus
ENSOPRG00000002443LSM599100.000ENSUMAG00000002625LSM553100.000Ursus_maritimus
ENSOPRG00000002443LSM5100100.000ENSVPAG00000009985LSM582100.000Vicugna_pacos
ENSOPRG00000002443LSM5100100.000ENSVVUG00000021311LSM582100.000Vulpes_vulpes
ENSOPRG00000002443LSM58898.485ENSXETG00000026465lsm58098.485Xenopus_tropicalis
ENSOPRG00000002443LSM58396.774ENSXCOG00000015348lsm510096.774Xiphophorus_couchianus
ENSOPRG00000002443LSM510097.333ENSXMAG00000029988lsm58297.333Xiphophorus_maculatus

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