EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSOPRG00000005575 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ochotona_princeps
Status: putative
Strand: Minus strand
Length: 1687 bases
Position: chrscaffold_25971:8098-9784
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOPRP00000005107	LSM	PF01423.22	9.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOPRT00000005563	LSM4-201	360	-	ENSOPRP00000005107	119 (aa)	-	UPI0001775757

Gene Model

Click here to download ENSOPRG00000005575's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOPRG00000005575's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSOPRG00000005575	LSM4	69	34.118	ENSOPRG00000003668	LSM2	66	36.923

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOPRG00000005575	LSM4	100	83.065	ENSG00000130520	LSM4	99	93.548	Homo_sapiens
ENSOPRG00000005575	LSM4	98	70.992	ENSAPOG00000005643	lsm4	87	69.466	Acanthochromis_polyacanthus
ENSOPRG00000005575	LSM4	100	83.065	ENSAMEG00000011162	LSM4	85	93.548	Ailuropoda_melanoleuca
ENSOPRG00000005575	LSM4	98	71.094	ENSAOCG00000006414	lsm4	52	97.403	Amphiprion_ocellaris
ENSOPRG00000005575	LSM4	98	72.093	ENSAPEG00000006238	lsm4	87	69.767	Amphiprion_percula
ENSOPRG00000005575	LSM4	71	95.238	ENSATEG00000016559	lsm4	51	97.403	Anabas_testudineus
ENSOPRG00000005575	LSM4	100	87.500	ENSANAG00000034659	LSM4	100	96.667	Aotus_nancymaae
ENSOPRG00000005575	LSM4	98	75.781	ENSACLG00000022738	lsm4	52	97.403	Astatotilapia_calliptera
ENSOPRG00000005575	LSM4	98	77.869	ENSAMXG00000016932	lsm4	86	78.689	Astyanax_mexicanus
ENSOPRG00000005575	LSM4	100	83.065	ENSBTAG00000008578	LSM4	89	93.548	Bos_taurus
ENSOPRG00000005575	LSM4	57	72.059	WBGene00003078	lsm-4	69	63.529	Caenorhabditis_elegans
ENSOPRG00000005575	LSM4	100	83.065	ENSCJAG00000014171	LSM4	99	93.548	Callithrix_jacchus
ENSOPRG00000005575	LSM4	99	82.927	ENSCAFG00000014900	LSM4	80	93.496	Canis_familiaris
ENSOPRG00000005575	LSM4	100	83.065	ENSCAFG00020012137	LSM4	89	93.548	Canis_lupus_dingo
ENSOPRG00000005575	LSM4	100	83.065	ENSCHIG00000010928	LSM4	82	93.548	Capra_hircus
ENSOPRG00000005575	LSM4	100	82.258	ENSTSYG00000030906	LSM4	99	92.742	Carlito_syrichta
ENSOPRG00000005575	LSM4	100	81.452	ENSCAPG00000014140	LSM4	89	91.129	Cavia_aperea
ENSOPRG00000005575	LSM4	100	81.452	ENSCPOG00000024117	LSM4	89	91.129	Cavia_porcellus
ENSOPRG00000005575	LSM4	100	83.065	ENSCCAG00000036308	LSM4	99	93.548	Cebus_capucinus
ENSOPRG00000005575	LSM4	100	87.500	ENSCATG00000029311	LSM4	99	96.667	Cercocebus_atys
ENSOPRG00000005575	LSM4	100	90.323	ENSCLAG00000010828	LSM4	89	90.323	Chinchilla_lanigera
ENSOPRG00000005575	LSM4	100	83.065	ENSCSAG00000005370	LSM4	89	93.548	Chlorocebus_sabaeus
ENSOPRG00000005575	LSM4	100	73.984	ENSCPBG00000012925	LSM4	89	82.258	Chrysemys_picta_bellii
ENSOPRG00000005575	LSM4	60	91.549	ENSCING00000007519	-	61	90.909	Ciona_intestinalis
ENSOPRG00000005575	LSM4	60	92.958	ENSCSAVG00000008596	-	62	92.208	Ciona_savignyi
ENSOPRG00000005575	LSM4	100	87.500	ENSCANG00000043686	LSM4	99	96.667	Colobus_angolensis_palliatus
ENSOPRG00000005575	LSM4	100	79.839	ENSCGRG00001014436	Lsm4	89	89.516	Cricetulus_griseus_chok1gshd
ENSOPRG00000005575	LSM4	100	79.839	ENSCGRG00000009398	Lsm4	90	89.516	Cricetulus_griseus_crigri
ENSOPRG00000005575	LSM4	69	96.341	ENSCSEG00000016127	lsm4	54	98.701	Cynoglossus_semilaevis
ENSOPRG00000005575	LSM4	98	74.797	ENSCVAG00000010601	lsm4	54	97.403	Cyprinodon_variegatus
ENSOPRG00000005575	LSM4	98	74.797	ENSCVAG00000021828	lsm4	59	97.403	Cyprinodon_variegatus
ENSOPRG00000005575	LSM4	97	72.222	ENSDARG00000023852	lsm4	98	74.603	Danio_rerio
ENSOPRG00000005575	LSM4	100	92.742	ENSDORG00000024225	Lsm4	89	92.742	Dipodomys_ordii
ENSOPRG00000005575	LSM4	100	81.452	ENSETEG00000007762	-	100	91.935	Echinops_telfairi
ENSOPRG00000005575	LSM4	50	91.667	ENSEBUG00000003639	-	53	76.250	Eptatretus_burgeri
ENSOPRG00000005575	LSM4	100	83.065	ENSECAG00000010141	LSM4	51	93.548	Equus_caballus
ENSOPRG00000005575	LSM4	95	79.661	ENSELUG00000012821	lsm4	59	96.154	Esox_lucius
ENSOPRG00000005575	LSM4	100	83.065	ENSFCAG00000040580	LSM4	99	93.548	Felis_catus
ENSOPRG00000005575	LSM4	100	73.984	ENSFALG00000009478	LSM4	89	82.258	Ficedula_albicollis
ENSOPRG00000005575	LSM4	100	82.258	ENSFDAG00000010124	LSM4	90	91.129	Fukomys_damarensis
ENSOPRG00000005575	LSM4	98	70.455	ENSGMOG00000007729	lsm4	86	77.953	Gadus_morhua
ENSOPRG00000005575	LSM4	100	73.984	ENSGALG00000003385	LSM4	89	82.258	Gallus_gallus
ENSOPRG00000005575	LSM4	98	79.032	ENSGAFG00000004903	lsm4	58	96.104	Gambusia_affinis
ENSOPRG00000005575	LSM4	67	96.250	ENSGACG00000008140	lsm4	51	97.403	Gasterosteus_aculeatus
ENSOPRG00000005575	LSM4	100	73.984	ENSGAGG00000017812	LSM4	89	82.258	Gopherus_agassizii
ENSOPRG00000005575	LSM4	100	87.500	ENSGGOG00000012914	-	99	96.667	Gorilla_gorilla
ENSOPRG00000005575	LSM4	100	91.129	ENSHGLG00000006568	LSM4	89	91.129	Heterocephalus_glaber_female
ENSOPRG00000005575	LSM4	66	98.718	ENSHGLG00100007894	LSM4	84	98.718	Heterocephalus_glaber_male
ENSOPRG00000005575	LSM4	98	74.590	ENSHCOG00000008819	lsm4	54	97.403	Hippocampus_comes
ENSOPRG00000005575	LSM4	98	76.230	ENSIPUG00000005368	Lsm4	86	77.049	Ictalurus_punctatus
ENSOPRG00000005575	LSM4	100	83.065	ENSSTOG00000016494	LSM4	89	93.548	Ictidomys_tridecemlineatus
ENSOPRG00000005575	LSM4	100	81.452	ENSJJAG00000017420	Lsm4	89	91.129	Jaculus_jaculus
ENSOPRG00000005575	LSM4	60	95.775	ENSKMAG00000005073	lsm4	86	76.613	Kryptolebias_marmoratus
ENSOPRG00000005575	LSM4	71	95.238	ENSLBEG00000027930	lsm4	52	97.403	Labrus_bergylta
ENSOPRG00000005575	LSM4	98	72.951	ENSLACG00000015861	LSM4	56	96.154	Latimeria_chalumnae
ENSOPRG00000005575	LSM4	92	79.646	ENSLOCG00000002025	lsm4	55	96.154	Lepisosteus_oculatus
ENSOPRG00000005575	LSM4	100	81.452	ENSLAFG00000017459	LSM4	89	91.935	Loxodonta_africana
ENSOPRG00000005575	LSM4	100	87.500	ENSMFAG00000031194	LSM4	99	96.667	Macaca_fascicularis
ENSOPRG00000005575	LSM4	100	83.065	ENSMMUG00000004405	LSM4	99	93.548	Macaca_mulatta
ENSOPRG00000005575	LSM4	100	87.500	ENSMNEG00000042899	LSM4	99	96.667	Macaca_nemestrina
ENSOPRG00000005575	LSM4	100	87.500	ENSMLEG00000027948	LSM4	99	96.667	Mandrillus_leucophaeus
ENSOPRG00000005575	LSM4	98	75.610	ENSMAMG00000006190	lsm4	54	97.403	Mastacembelus_armatus
ENSOPRG00000005575	LSM4	98	76.378	ENSMZEG00005016420	lsm4	53	97.403	Maylandia_zebra
ENSOPRG00000005575	LSM4	100	76.800	ENSMGAG00000004976	LSM4	89	82.400	Meleagris_gallopavo
ENSOPRG00000005575	LSM4	100	91.129	ENSMICG00000000222	LSM4	99	92.742	Microcebus_murinus
ENSOPRG00000005575	LSM4	100	80.645	ENSMOCG00000020861	Lsm4	89	90.323	Microtus_ochrogaster
ENSOPRG00000005575	LSM4	100	80.645	ENSMODG00000015044	-	100	89.516	Monodelphis_domestica
ENSOPRG00000005575	LSM4	98	73.984	ENSMALG00000018159	lsm4	54	96.104	Monopterus_albus
ENSOPRG00000005575	LSM4	100	80.645	MGP_CAROLIEiJ_G0031158	Lsm4	89	90.323	Mus_caroli
ENSOPRG00000005575	LSM4	100	80.645	ENSMUSG00000031848	Lsm4	89	90.323	Mus_musculus
ENSOPRG00000005575	LSM4	100	80.645	MGP_PahariEiJ_G0021623	Lsm4	89	90.323	Mus_pahari
ENSOPRG00000005575	LSM4	100	80.645	MGP_SPRETEiJ_G0032276	Lsm4	89	90.323	Mus_spretus
ENSOPRG00000005575	LSM4	100	83.065	ENSMPUG00000015589	LSM4	89	93.548	Mustela_putorius_furo
ENSOPRG00000005575	LSM4	100	83.065	ENSMLUG00000004010	LSM4	89	93.548	Myotis_lucifugus
ENSOPRG00000005575	LSM4	100	80.645	ENSNGAG00000008644	Lsm4	93	90.323	Nannospalax_galili
ENSOPRG00000005575	LSM4	100	77.419	ENSMEUG00000013229	LSM4	100	86.290	Notamacropus_eugenii
ENSOPRG00000005575	LSM4	100	77.049	ENSODEG00000004519	-	89	77.419	Octodon_degus
ENSOPRG00000005575	LSM4	100	91.129	ENSODEG00000020549	-	89	91.129	Octodon_degus
ENSOPRG00000005575	LSM4	100	64.516	ENSODEG00000011712	-	86	64.516	Octodon_degus
ENSOPRG00000005575	LSM4	98	75.781	ENSONIG00000012724	lsm4	52	97.403	Oreochromis_niloticus
ENSOPRG00000005575	LSM4	61	97.260	ENSOANG00000007434	LSM4	77	94.382	Ornithorhynchus_anatinus
ENSOPRG00000005575	LSM4	98	78.400	ENSORLG00000008391	lsm4	86	76.613	Oryzias_latipes
ENSOPRG00000005575	LSM4	98	78.400	ENSORLG00020014829	lsm4	86	76.613	Oryzias_latipes_hni
ENSOPRG00000005575	LSM4	98	78.400	ENSORLG00015010205	lsm4	86	76.613	Oryzias_latipes_hsok
ENSOPRG00000005575	LSM4	100	77.236	ENSOMEG00000003606	lsm4	53	96.104	Oryzias_melastigma
ENSOPRG00000005575	LSM4	71	97.647	ENSOGAG00000027992	LSM4	62	95.556	Otolemur_garnettii
ENSOPRG00000005575	LSM4	61	98.630	ENSOARG00000012553	LSM4	93	93.220	Ovis_aries
ENSOPRG00000005575	LSM4	100	87.500	ENSPPAG00000044045	-	99	96.667	Pan_paniscus
ENSOPRG00000005575	LSM4	100	83.065	ENSPPRG00000018264	LSM4	99	93.548	Panthera_pardus
ENSOPRG00000005575	LSM4	100	83.065	ENSPTIG00000006306	LSM4	90	93.548	Panthera_tigris_altaica
ENSOPRG00000005575	LSM4	100	87.500	ENSPTRG00000031470	LSM4	99	96.667	Pan_troglodytes
ENSOPRG00000005575	LSM4	100	83.065	ENSPANG00000014399	LSM4	99	93.548	Papio_anubis
ENSOPRG00000005575	LSM4	98	76.860	ENSPKIG00000006154	lsm4	60	96.154	Paramormyrops_kingsleyae
ENSOPRG00000005575	LSM4	100	73.171	ENSPSIG00000012358	LSM4	90	82.258	Pelodiscus_sinensis
ENSOPRG00000005575	LSM4	100	80.645	ENSPEMG00000001358	Lsm4	89	90.323	Peromyscus_maniculatus_bairdii
ENSOPRG00000005575	LSM4	98	71.212	ENSPLAG00000016267	lsm4	54	97.403	Poecilia_latipinna
ENSOPRG00000005575	LSM4	98	79.167	ENSPMEG00000016378	lsm4	86	77.311	Poecilia_mexicana
ENSOPRG00000005575	LSM4	100	83.065	ENSPPYG00000009736	LSM4	89	93.548	Pongo_abelii
ENSOPRG00000005575	LSM4	100	81.452	ENSPCAG00000008513	LSM4	100	91.935	Procavia_capensis
ENSOPRG00000005575	LSM4	100	91.129	ENSPCOG00000019837	LSM4	99	92.742	Propithecus_coquereli
ENSOPRG00000005575	LSM4	100	83.065	ENSPVAG00000015383	LSM4	89	93.548	Pteropus_vampyrus
ENSOPRG00000005575	LSM4	98	76.378	ENSPNYG00000016794	lsm4	53	97.403	Pundamilia_nyererei
ENSOPRG00000005575	LSM4	96	79.661	ENSPNAG00000016598	lsm4	58	96.154	Pygocentrus_nattereri
ENSOPRG00000005575	LSM4	100	80.645	ENSRNOG00000019572	Lsm4	89	90.323	Rattus_norvegicus
ENSOPRG00000005575	LSM4	100	87.500	ENSRBIG00000024717	LSM4	99	96.667	Rhinopithecus_bieti
ENSOPRG00000005575	LSM4	100	87.500	ENSRROG00000045706	LSM4	99	96.667	Rhinopithecus_roxellana
ENSOPRG00000005575	LSM4	100	83.065	ENSSBOG00000022455	LSM4	99	93.548	Saimiri_boliviensis_boliviensis
ENSOPRG00000005575	LSM4	100	80.645	ENSSHAG00000011559	LSM4	89	89.516	Sarcophilus_harrisii
ENSOPRG00000005575	LSM4	98	75.207	ENSSFOG00015021067	lsm4	55	96.154	Scleropages_formosus
ENSOPRG00000005575	LSM4	71	94.048	ENSSMAG00000021020	lsm4	51	97.403	Scophthalmus_maximus
ENSOPRG00000005575	LSM4	61	97.260	ENSSPUG00000010166	LSM4	57	95.455	Sphenodon_punctatus
ENSOPRG00000005575	LSM4	98	70.992	ENSSPAG00000011615	lsm4	87	69.466	Stegastes_partitus
ENSOPRG00000005575	LSM4	100	83.065	ENSSSCG00000034314	LSM4	89	93.548	Sus_scrofa
ENSOPRG00000005575	LSM4	98	78.226	ENSTRUG00000021737	lsm4	54	97.403	Takifugu_rubripes
ENSOPRG00000005575	LSM4	98	77.600	ENSTNIG00000010191	lsm4	53	98.701	Tetraodon_nigroviridis
ENSOPRG00000005575	LSM4	100	83.065	ENSUAMG00000000665	LSM4	89	93.548	Ursus_americanus
ENSOPRG00000005575	LSM4	100	83.065	ENSUMAG00000009013	LSM4	89	93.548	Ursus_maritimus
ENSOPRG00000005575	LSM4	100	83.065	ENSVVUG00000008136	LSM4	64	93.548	Vulpes_vulpes
ENSOPRG00000005575	LSM4	100	79.675	ENSXETG00000024933	lsm4	89	82.258	Xenopus_tropicalis