EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOPRG00000009152 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ochotona_princeps
Status: putative
Strand: Minus strand
Length: 28076 bases
Position: chrGeneScaffold_5041:13708-41783
Accession: 101519940
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOPRP00000008388	EST1	PF10374.9	4.3e-24	1	1
ENSOPRP00000008388	EST1_DNA_bind	PF10373.9	4e-40	1	2
ENSOPRP00000008388	EST1_DNA_bind	PF10373.9	4e-40	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOPRT00000009164	SMG5-201	3048	XM_004589033	ENSOPRP00000008388	1015 (aa)	XP_004589090	UPI0001776A5F

Gene Model

Click here to download ENSOPRG00000009152's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOPRG00000009152's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOPRG00000009152	SMG5	100	94.291	ENSG00000198952	SMG5	100	94.291	Homo_sapiens
ENSOPRG00000009152	SMG5	99	66.699	ENSAPOG00000019690	smg5	99	66.634	Acanthochromis_polyacanthus
ENSOPRG00000009152	SMG5	98	90.332	ENSAMEG00000014458	SMG5	100	90.332	Ailuropoda_melanoleuca
ENSOPRG00000009152	SMG5	99	64.943	ENSACIG00000001353	smg5	99	66.379	Amphilophus_citrinellus
ENSOPRG00000009152	SMG5	98	64.503	ENSAOCG00000019483	smg5	99	61.313	Amphiprion_ocellaris
ENSOPRG00000009152	SMG5	98	65.743	ENSAPEG00000022949	smg5	98	66.335	Amphiprion_percula
ENSOPRG00000009152	SMG5	99	66.118	ENSATEG00000005348	smg5	99	66.893	Anabas_testudineus
ENSOPRG00000009152	SMG5	98	77.366	ENSAPLG00000010263	SMG5	100	77.268	Anas_platyrhynchos
ENSOPRG00000009152	SMG5	100	93.898	ENSANAG00000032899	SMG5	100	93.898	Aotus_nancymaae
ENSOPRG00000009152	SMG5	99	65.067	ENSACLG00000009311	smg5	99	65.833	Astatotilapia_calliptera
ENSOPRG00000009152	SMG5	99	43.756	ENSBTAG00000021747	-	99	43.659	Bos_taurus
ENSOPRG00000009152	SMG5	100	93.701	ENSBTAG00000009435	SMG5	100	93.701	Bos_taurus
ENSOPRG00000009152	SMG5	100	94.094	ENSCJAG00000005684	SMG5	100	94.094	Callithrix_jacchus
ENSOPRG00000009152	SMG5	100	92.028	ENSCAFG00000016839	SMG5	100	91.732	Canis_familiaris
ENSOPRG00000009152	SMG5	100	92.028	ENSCAFG00020006061	SMG5	100	91.732	Canis_lupus_dingo
ENSOPRG00000009152	SMG5	99	44.161	ENSCHIG00000006323	-	99	43.799	Capra_hircus
ENSOPRG00000009152	SMG5	100	93.701	ENSCHIG00000007709	SMG5	100	93.701	Capra_hircus
ENSOPRG00000009152	SMG5	100	93.904	ENSTSYG00000004099	SMG5	100	93.314	Carlito_syrichta
ENSOPRG00000009152	SMG5	97	71.777	ENSCAPG00000003631	SMG5	100	72.378	Cavia_aperea
ENSOPRG00000009152	SMG5	100	93.026	ENSCPOG00000015696	SMG5	100	92.731	Cavia_porcellus
ENSOPRG00000009152	SMG5	100	93.996	ENSCCAG00000027409	SMG5	100	93.996	Cebus_capucinus
ENSOPRG00000009152	SMG5	100	94.587	ENSCATG00000030539	SMG5	100	94.587	Cercocebus_atys
ENSOPRG00000009152	SMG5	100	93.222	ENSCLAG00000003983	SMG5	100	93.124	Chinchilla_lanigera
ENSOPRG00000009152	SMG5	100	94.488	ENSCSAG00000002120	SMG5	100	94.488	Chlorocebus_sabaeus
ENSOPRG00000009152	SMG5	54	88.686	ENSCHOG00000008741	-	57	88.686	Choloepus_hoffmanni
ENSOPRG00000009152	SMG5	94	76.650	ENSCPBG00000025848	SMG5	100	77.079	Chrysemys_picta_bellii
ENSOPRG00000009152	SMG5	93	34.394	ENSCING00000008706	-	99	35.031	Ciona_intestinalis
ENSOPRG00000009152	SMG5	100	90.650	ENSCANG00000029208	SMG5	100	90.650	Colobus_angolensis_palliatus
ENSOPRG00000009152	SMG5	100	90.766	ENSCGRG00001006336	Smg5	100	90.668	Cricetulus_griseus_chok1gshd
ENSOPRG00000009152	SMG5	98	90.744	ENSCGRG00000005111	Smg5	100	90.634	Cricetulus_griseus_crigri
ENSOPRG00000009152	SMG5	99	64.769	ENSCSEG00000014220	smg5	99	65.064	Cynoglossus_semilaevis
ENSOPRG00000009152	SMG5	99	60.429	ENSCVAG00000000529	smg5	99	61.127	Cyprinodon_variegatus
ENSOPRG00000009152	SMG5	52	60.989	ENSDARG00000041481	smg5	99	63.793	Danio_rerio
ENSOPRG00000009152	SMG5	92	36.720	ENSDNOG00000039862	-	100	36.190	Dasypus_novemcinctus
ENSOPRG00000009152	SMG5	100	89.173	ENSDNOG00000000051	SMG5	100	89.173	Dasypus_novemcinctus
ENSOPRG00000009152	SMG5	100	92.633	ENSDORG00000010382	Smg5	100	92.436	Dipodomys_ordii
ENSOPRG00000009152	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSOPRG00000009152	SMG5	82	93.204	ENSETEG00000010336	SMG5	89	93.204	Echinops_telfairi
ENSOPRG00000009152	SMG5	100	94.193	ENSEASG00005019122	SMG5	100	94.193	Equus_asinus_asinus
ENSOPRG00000009152	SMG5	100	94.193	ENSECAG00000001389	SMG5	100	94.193	Equus_caballus
ENSOPRG00000009152	SMG5	72	98.847	ENSEEUG00000012690	SMG5	74	98.847	Erinaceus_europaeus
ENSOPRG00000009152	SMG5	99	65.507	ENSELUG00000012585	smg5	99	65.604	Esox_lucius
ENSOPRG00000009152	SMG5	100	91.937	ENSFCAG00000011783	SMG5	100	91.642	Felis_catus
ENSOPRG00000009152	SMG5	58	81.742	ENSFALG00000001166	-	99	81.742	Ficedula_albicollis
ENSOPRG00000009152	SMG5	98	91.440	ENSFDAG00000017388	SMG5	100	91.339	Fukomys_damarensis
ENSOPRG00000009152	SMG5	97	62.010	ENSFHEG00000013939	smg5	95	68.301	Fundulus_heteroclitus
ENSOPRG00000009152	SMG5	99	61.293	ENSGMOG00000007310	smg5	99	61.858	Gadus_morhua
ENSOPRG00000009152	SMG5	99	76.702	ENSGALG00000029918	-	100	76.420	Gallus_gallus
ENSOPRG00000009152	SMG5	72	77.622	ENSGAFG00000021691	smg5	95	66.454	Gambusia_affinis
ENSOPRG00000009152	SMG5	100	78.273	ENSGAGG00000016131	SMG5	100	77.778	Gopherus_agassizii
ENSOPRG00000009152	SMG5	100	94.094	ENSGGOG00000010932	SMG5	100	94.094	Gorilla_gorilla
ENSOPRG00000009152	SMG5	99	64.689	ENSHBUG00000008654	smg5	99	64.986	Haplochromis_burtoni
ENSOPRG00000009152	SMG5	100	90.864	ENSHGLG00000019152	SMG5	100	91.061	Heterocephalus_glaber_female
ENSOPRG00000009152	SMG5	90	90.690	ENSHGLG00100015948	SMG5	99	90.909	Heterocephalus_glaber_male
ENSOPRG00000009152	SMG5	87	73.141	ENSHCOG00000010229	smg5	94	73.594	Hippocampus_comes
ENSOPRG00000009152	SMG5	50	58.704	ENSIPUG00000006624	Smg5	99	62.044	Ictalurus_punctatus
ENSOPRG00000009152	SMG5	100	93.406	ENSSTOG00000001780	SMG5	100	92.920	Ictidomys_tridecemlineatus
ENSOPRG00000009152	SMG5	100	91.168	ENSJJAG00000022763	Smg5	100	91.462	Jaculus_jaculus
ENSOPRG00000009152	SMG5	50	58.242	ENSKMAG00000014586	smg5	99	61.511	Kryptolebias_marmoratus
ENSOPRG00000009152	SMG5	99	65.830	ENSLBEG00000002145	smg5	99	65.736	Labrus_bergylta
ENSOPRG00000009152	SMG5	100	63.593	ENSLACG00000010521	SMG5	100	63.688	Latimeria_chalumnae
ENSOPRG00000009152	SMG5	96	78.454	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSOPRG00000009152	SMG5	100	92.717	ENSLAFG00000006241	SMG5	100	92.717	Loxodonta_africana
ENSOPRG00000009152	SMG5	100	94.488	ENSMFAG00000045357	SMG5	100	94.488	Macaca_fascicularis
ENSOPRG00000009152	SMG5	100	94.390	ENSMMUG00000000090	SMG5	100	94.390	Macaca_mulatta
ENSOPRG00000009152	SMG5	100	94.390	ENSMNEG00000044425	SMG5	100	94.390	Macaca_nemestrina
ENSOPRG00000009152	SMG5	100	88.224	ENSMLEG00000041192	SMG5	100	88.224	Mandrillus_leucophaeus
ENSOPRG00000009152	SMG5	99	61.820	ENSMAMG00000010683	smg5	100	61.626	Mastacembelus_armatus
ENSOPRG00000009152	SMG5	99	63.238	ENSMZEG00005015815	smg5	99	64.593	Maylandia_zebra
ENSOPRG00000009152	SMG5	63	57.635	ENSMZEG00005016543	smg5	100	57.919	Maylandia_zebra
ENSOPRG00000009152	SMG5	100	89.784	ENSMAUG00000010381	Smg5	100	90.079	Mesocricetus_auratus
ENSOPRG00000009152	SMG5	100	94.587	ENSMICG00000002257	SMG5	100	94.587	Microcebus_murinus
ENSOPRG00000009152	SMG5	100	89.804	ENSMOCG00000016590	Smg5	100	89.706	Microtus_ochrogaster
ENSOPRG00000009152	SMG5	99	58.787	ENSMMOG00000017199	smg5	99	58.771	Mola_mola
ENSOPRG00000009152	SMG5	97	34.916	ENSMODG00000004511	-	99	34.486	Monodelphis_domestica
ENSOPRG00000009152	SMG5	87	87.387	ENSMODG00000016901	SMG5	98	87.838	Monodelphis_domestica
ENSOPRG00000009152	SMG5	92	37.563	ENSMODG00000004532	-	84	38.320	Monodelphis_domestica
ENSOPRG00000009152	SMG5	91	40.420	ENSMODG00000004735	-	86	40.533	Monodelphis_domestica
ENSOPRG00000009152	SMG5	75	38.144	ENSMODG00000010675	-	85	37.859	Monodelphis_domestica
ENSOPRG00000009152	SMG5	99	60.889	ENSMALG00000010375	smg5	99	60.515	Monopterus_albus
ENSOPRG00000009152	SMG5	100	90.472	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSOPRG00000009152	SMG5	100	90.570	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSOPRG00000009152	SMG5	100	90.383	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSOPRG00000009152	SMG5	100	90.472	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSOPRG00000009152	SMG5	94	90.632	ENSMPUG00000004546	SMG5	100	90.316	Mustela_putorius_furo
ENSOPRG00000009152	SMG5	100	91.879	ENSMLUG00000008518	SMG5	100	91.096	Myotis_lucifugus
ENSOPRG00000009152	SMG5	100	92.232	ENSNGAG00000020706	Smg5	100	92.232	Nannospalax_galili
ENSOPRG00000009152	SMG5	98	44.766	ENSNGAG00000012101	-	98	44.147	Nannospalax_galili
ENSOPRG00000009152	SMG5	97	62.963	ENSNBRG00000004332	smg5	98	64.895	Neolamprologus_brichardi
ENSOPRG00000009152	SMG5	100	94.094	ENSNLEG00000012439	SMG5	100	94.094	Nomascus_leucogenys
ENSOPRG00000009152	SMG5	100	85.939	ENSMEUG00000012834	SMG5	100	86.332	Notamacropus_eugenii
ENSOPRG00000009152	SMG5	100	93.307	ENSODEG00000012237	SMG5	100	93.307	Octodon_degus
ENSOPRG00000009152	SMG5	50	59.232	ENSONIG00000008632	smg5	99	61.525	Oreochromis_niloticus
ENSOPRG00000009152	SMG5	89	40.745	ENSOCUG00000023338	-	99	40.414	Oryctolagus_cuniculus
ENSOPRG00000009152	SMG5	98	95.363	ENSOCUG00000012886	SMG5	100	95.363	Oryctolagus_cuniculus
ENSOPRG00000009152	SMG5	50	58.011	ENSORLG00000016239	smg5	99	61.677	Oryzias_latipes
ENSOPRG00000009152	SMG5	99	63.892	ENSORLG00020013127	smg5	99	65.595	Oryzias_latipes_hni
ENSOPRG00000009152	SMG5	99	63.946	ENSORLG00015019014	smg5	99	65.695	Oryzias_latipes_hsok
ENSOPRG00000009152	SMG5	100	92.717	ENSOGAG00000004966	SMG5	100	92.717	Otolemur_garnettii
ENSOPRG00000009152	SMG5	99	44.195	ENSOARG00000011963	-	99	43.695	Ovis_aries
ENSOPRG00000009152	SMG5	100	93.799	ENSOARG00000005778	SMG5	100	93.799	Ovis_aries
ENSOPRG00000009152	SMG5	100	94.193	ENSPPAG00000011996	SMG5	100	94.193	Pan_paniscus
ENSOPRG00000009152	SMG5	98	91.734	ENSPPRG00000011901	SMG5	100	91.431	Panthera_pardus
ENSOPRG00000009152	SMG5	99	83.566	ENSPTIG00000007892	SMG5	98	84.600	Panthera_tigris_altaica
ENSOPRG00000009152	SMG5	100	94.390	ENSPTRG00000023925	SMG5	100	94.390	Pan_troglodytes
ENSOPRG00000009152	SMG5	100	94.390	ENSPTRG00000049282	-	100	94.390	Pan_troglodytes
ENSOPRG00000009152	SMG5	100	94.587	ENSPANG00000011201	SMG5	100	94.587	Papio_anubis
ENSOPRG00000009152	SMG5	99	65.209	ENSPKIG00000009402	smg5	99	64.899	Paramormyrops_kingsleyae
ENSOPRG00000009152	SMG5	98	78.911	ENSPSIG00000015198	SMG5	100	78.812	Pelodiscus_sinensis
ENSOPRG00000009152	SMG5	99	59.834	ENSPMGG00000010465	smg5	99	59.798	Periophthalmus_magnuspinnatus
ENSOPRG00000009152	SMG5	56	45.951	ENSPEMG00000010022	-	95	44.387	Peromyscus_maniculatus_bairdii
ENSOPRG00000009152	SMG5	100	90.963	ENSPEMG00000001819	Smg5	100	90.864	Peromyscus_maniculatus_bairdii
ENSOPRG00000009152	SMG5	99	49.323	ENSPMAG00000000410	smg5	100	49.240	Petromyzon_marinus
ENSOPRG00000009152	SMG5	100	87.623	ENSPCIG00000018938	SMG5	100	88.016	Phascolarctos_cinereus
ENSOPRG00000009152	SMG5	50	59.851	ENSPFOG00000010191	smg5	99	62.791	Poecilia_formosa
ENSOPRG00000009152	SMG5	50	59.815	ENSPLAG00000009332	smg5	99	62.701	Poecilia_latipinna
ENSOPRG00000009152	SMG5	99	65.192	ENSPMEG00000014105	smg5	99	65.870	Poecilia_mexicana
ENSOPRG00000009152	SMG5	50	58.922	ENSPREG00000017713	smg5	99	62.545	Poecilia_reticulata
ENSOPRG00000009152	SMG5	100	94.291	ENSPPYG00000000723	SMG5	100	94.291	Pongo_abelii
ENSOPRG00000009152	SMG5	75	92.818	ENSPCAG00000008412	SMG5	81	92.818	Procavia_capensis
ENSOPRG00000009152	SMG5	100	94.291	ENSPCOG00000004741	SMG5	100	94.291	Propithecus_coquereli
ENSOPRG00000009152	SMG5	100	84.350	ENSPVAG00000016748	SMG5	100	84.350	Pteropus_vampyrus
ENSOPRG00000009152	SMG5	92	65.116	ENSPNYG00000013397	smg5	99	61.219	Pundamilia_nyererei
ENSOPRG00000009152	SMG5	99	61.840	ENSPNAG00000028363	smg5	99	62.192	Pygocentrus_nattereri
ENSOPRG00000009152	SMG5	100	90.668	ENSRNOG00000019590	Smg5	100	90.570	Rattus_norvegicus
ENSOPRG00000009152	SMG5	100	94.291	ENSRBIG00000027428	SMG5	100	94.291	Rhinopithecus_bieti
ENSOPRG00000009152	SMG5	100	94.193	ENSRROG00000030035	SMG5	100	94.193	Rhinopithecus_roxellana
ENSOPRG00000009152	SMG5	100	94.291	ENSSBOG00000033339	SMG5	100	94.291	Saimiri_boliviensis_boliviensis
ENSOPRG00000009152	SMG5	64	41.520	ENSSHAG00000000935	-	92	42.683	Sarcophilus_harrisii
ENSOPRG00000009152	SMG5	98	86.987	ENSSHAG00000014163	SMG5	100	87.387	Sarcophilus_harrisii
ENSOPRG00000009152	SMG5	99	33.268	ENSSHAG00000009572	-	80	42.752	Sarcophilus_harrisii
ENSOPRG00000009152	SMG5	87	40.157	ENSSHAG00000000561	-	98	40.157	Sarcophilus_harrisii
ENSOPRG00000009152	SMG5	99	65.828	ENSSFOG00015024175	smg5	99	65.474	Scleropages_formosus
ENSOPRG00000009152	SMG5	99	61.327	ENSSMAG00000013059	smg5	99	62.533	Scophthalmus_maximus
ENSOPRG00000009152	SMG5	99	61.253	ENSSDUG00000007122	smg5	99	61.858	Seriola_dumerili
ENSOPRG00000009152	SMG5	99	61.559	ENSSLDG00000011418	smg5	99	62.167	Seriola_lalandi_dorsalis
ENSOPRG00000009152	SMG5	90	79.716	ENSSARG00000012484	SMG5	100	79.716	Sorex_araneus
ENSOPRG00000009152	SMG5	94	76.089	ENSSPUG00000002260	SMG5	100	75.481	Sphenodon_punctatus
ENSOPRG00000009152	SMG5	92	76.443	ENSSPAG00000014266	smg5	99	65.063	Stegastes_partitus
ENSOPRG00000009152	SMG5	100	94.783	ENSSSCG00000006490	-	100	94.783	Sus_scrofa
ENSOPRG00000009152	SMG5	99	72.611	ENSSSCG00000039308	-	100	73.103	Sus_scrofa
ENSOPRG00000009152	SMG5	99	78.932	ENSTGUG00000003748	-	100	78.711	Taeniopygia_guttata
ENSOPRG00000009152	SMG5	99	64.575	ENSTRUG00000012580	smg5	99	63.873	Takifugu_rubripes
ENSOPRG00000009152	SMG5	99	64.700	ENSTNIG00000010303	smg5	99	64.507	Tetraodon_nigroviridis
ENSOPRG00000009152	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSOPRG00000009152	SMG5	100	89.764	ENSTTRG00000001401	SMG5	100	89.764	Tursiops_truncatus
ENSOPRG00000009152	SMG5	100	91.240	ENSUAMG00000013721	SMG5	100	90.945	Ursus_americanus
ENSOPRG00000009152	SMG5	98	86.935	ENSUMAG00000018041	SMG5	97	86.633	Ursus_maritimus
ENSOPRG00000009152	SMG5	98	84.662	ENSVPAG00000009446	SMG5	99	84.662	Vicugna_pacos
ENSOPRG00000009152	SMG5	100	91.732	ENSVVUG00000005887	SMG5	100	91.437	Vulpes_vulpes
ENSOPRG00000009152	SMG5	77	65.322	ENSXETG00000033791	SMG5	99	64.943	Xenopus_tropicalis
ENSOPRG00000009152	SMG5	59	78.385	ENSXCOG00000004379	smg5	95	67.582	Xiphophorus_couchianus
ENSOPRG00000009152	SMG5	99	65.571	ENSXMAG00000013499	smg5	99	66.249	Xiphophorus_maculatus