EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOPRG00000011803 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Ochotona_princeps
Status: putative
Strand: Plus strand
Length: 59743 bases
Position: chrGeneScaffold_364:180270-240012
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOPRP00000010763	HVSL	PF09749.9	7.2e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOPRT00000011795	USB1-201	699	-	ENSOPRP00000010763	232 (aa)	-	UPI000177876B

Gene Model

Click here to download ENSOPRG00000011803's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOPRG00000011803's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOPRG00000011803	USB1	72	87.879	ENSG00000103005	USB1	70	87.879	Homo_sapiens
ENSOPRG00000011803	USB1	72	87.879	ENSAMEG00000017205	USB1	62	87.879	Ailuropoda_melanoleuca
ENSOPRG00000011803	USB1	69	67.647	ENSAPLG00000002756	USB1	72	67.647	Anas_platyrhynchos
ENSOPRG00000011803	USB1	98	43.668	ENSACAG00000015481	USB1	100	43.668	Anolis_carolinensis
ENSOPRG00000011803	USB1	72	81.818	ENSANAG00000035640	USB1	74	77.778	Aotus_nancymaae
ENSOPRG00000011803	USB1	72	87.879	ENSBTAG00000015758	USB1	63	87.879	Bos_taurus
ENSOPRG00000011803	USB1	72	84.848	ENSCJAG00000011733	USB1	74	81.197	Callithrix_jacchus
ENSOPRG00000011803	USB1	72	87.500	ENSCAFG00020009263	USB1	62	87.500	Canis_lupus_dingo
ENSOPRG00000011803	USB1	72	87.879	ENSCHIG00000024290	USB1	63	87.879	Capra_hircus
ENSOPRG00000011803	USB1	72	91.176	ENSTSYG00000006997	USB1	63	91.176	Carlito_syrichta
ENSOPRG00000011803	USB1	72	91.176	ENSCAPG00000009057	USB1	86	91.176	Cavia_aperea
ENSOPRG00000011803	USB1	72	91.176	ENSCPOG00000014325	USB1	62	91.176	Cavia_porcellus
ENSOPRG00000011803	USB1	72	84.848	ENSCCAG00000022132	USB1	79	76.000	Cebus_capucinus
ENSOPRG00000011803	USB1	72	87.879	ENSCATG00000032174	USB1	75	78.814	Cercocebus_atys
ENSOPRG00000011803	USB1	72	87.879	ENSCSAG00000004783	USB1	63	87.879	Chlorocebus_sabaeus
ENSOPRG00000011803	USB1	72	64.706	ENSCPBG00000026943	USB1	60	64.706	Chrysemys_picta_bellii
ENSOPRG00000011803	USB1	72	87.879	ENSCANG00000037135	USB1	77	76.923	Colobus_angolensis_palliatus
ENSOPRG00000011803	USB1	72	97.059	ENSCGRG00001011243	USB1	63	97.059	Cricetulus_griseus_chok1gshd
ENSOPRG00000011803	USB1	72	97.059	ENSCGRG00000013252	USB1	63	97.059	Cricetulus_griseus_crigri
ENSOPRG00000011803	USB1	54	46.923	ENSCVAG00000009252	usb1	65	48.673	Cyprinodon_variegatus
ENSOPRG00000011803	USB1	72	88.235	ENSDORG00000001888	Usb1	63	88.235	Dipodomys_ordii
ENSOPRG00000011803	USB1	72	81.818	ENSETEG00000019682	USB1	63	81.818	Echinops_telfairi
ENSOPRG00000011803	USB1	72	87.879	ENSEASG00005005484	USB1	63	87.879	Equus_asinus_asinus
ENSOPRG00000011803	USB1	72	84.848	ENSECAG00000019493	USB1	58	84.848	Equus_caballus
ENSOPRG00000011803	USB1	98	35.526	ENSELUG00000010974	usb1	84	35.526	Esox_lucius
ENSOPRG00000011803	USB1	72	87.879	ENSFCAG00000002693	USB1	63	87.879	Felis_catus
ENSOPRG00000011803	USB1	70	61.765	ENSFALG00000006876	USB1	60	61.765	Ficedula_albicollis
ENSOPRG00000011803	USB1	72	91.176	ENSFDAG00000010052	USB1	63	91.176	Fukomys_damarensis
ENSOPRG00000011803	USB1	56	50.769	ENSFHEG00000012334	usb1	52	51.538	Fundulus_heteroclitus
ENSOPRG00000011803	USB1	54	50.400	ENSGMOG00000004228	usb1	56	50.400	Gadus_morhua
ENSOPRG00000011803	USB1	69	67.647	ENSGALG00000035604	USB1	63	67.647	Gallus_gallus
ENSOPRG00000011803	USB1	72	64.706	ENSGAGG00000022572	USB1	62	64.706	Gopherus_agassizii
ENSOPRG00000011803	USB1	72	84.848	ENSGGOG00000017147	USB1	72	77.966	Gorilla_gorilla
ENSOPRG00000011803	USB1	72	88.235	ENSHGLG00000016078	USB1	62	88.235	Heterocephalus_glaber_female
ENSOPRG00000011803	USB1	72	88.235	ENSHGLG00100005562	USB1	62	88.235	Heterocephalus_glaber_male
ENSOPRG00000011803	USB1	72	91.176	ENSSTOG00000007548	USB1	62	91.176	Ictidomys_tridecemlineatus
ENSOPRG00000011803	USB1	72	94.118	ENSJJAG00000021859	Usb1	63	94.118	Jaculus_jaculus
ENSOPRG00000011803	USB1	72	85.294	ENSLAFG00000002267	USB1	62	85.294	Loxodonta_africana
ENSOPRG00000011803	USB1	72	87.879	ENSMFAG00000003926	USB1	75	78.814	Macaca_fascicularis
ENSOPRG00000011803	USB1	72	87.879	ENSMMUG00000022669	USB1	76	78.632	Macaca_mulatta
ENSOPRG00000011803	USB1	72	84.848	ENSMNEG00000042487	USB1	75	78.814	Macaca_nemestrina
ENSOPRG00000011803	USB1	72	87.879	ENSMLEG00000028756	USB1	75	78.814	Mandrillus_leucophaeus
ENSOPRG00000011803	USB1	72	94.118	ENSMAUG00000007832	Usb1	63	94.118	Mesocricetus_auratus
ENSOPRG00000011803	USB1	99	60.606	ENSMICG00000004900	USB1	75	80.508	Microcebus_murinus
ENSOPRG00000011803	USB1	72	100.000	ENSMOCG00000022647	Usb1	63	100.000	Microtus_ochrogaster
ENSOPRG00000011803	USB1	56	50.000	ENSMMOG00000000490	usb1	51	50.000	Mola_mola
ENSOPRG00000011803	USB1	94	50.000	ENSMODG00000014067	USB1	87	49.569	Monodelphis_domestica
ENSOPRG00000011803	USB1	72	94.118	MGP_CAROLIEiJ_G0031421	Usb1	100	77.876	Mus_caroli
ENSOPRG00000011803	USB1	72	94.118	ENSMUSG00000031792	Usb1	100	78.761	Mus_musculus
ENSOPRG00000011803	USB1	72	94.118	MGP_PahariEiJ_G0023019	Usb1	99	81.034	Mus_pahari
ENSOPRG00000011803	USB1	72	94.118	MGP_SPRETEiJ_G0032540	Usb1	63	94.118	Mus_spretus
ENSOPRG00000011803	USB1	72	87.879	ENSMPUG00000004684	USB1	60	87.879	Mustela_putorius_furo
ENSOPRG00000011803	USB1	72	94.118	ENSMLUG00000007400	USB1	72	94.118	Myotis_lucifugus
ENSOPRG00000011803	USB1	72	91.176	ENSNGAG00000009703	Usb1	62	91.176	Nannospalax_galili
ENSOPRG00000011803	USB1	50	49.138	ENSNBRG00000008747	usb1	76	47.500	Neolamprologus_brichardi
ENSOPRG00000011803	USB1	58	82.090	ENSNLEG00000003340	USB1	74	79.487	Nomascus_leucogenys
ENSOPRG00000011803	USB1	72	85.294	ENSODEG00000016214	USB1	63	85.294	Octodon_degus
ENSOPRG00000011803	USB1	69	66.142	ENSOANG00000012118	USB1	67	66.142	Ornithorhynchus_anatinus
ENSOPRG00000011803	USB1	66	88.235	ENSOGAG00000003273	USB1	62	88.235	Otolemur_garnettii
ENSOPRG00000011803	USB1	72	87.879	ENSOARG00000001107	USB1	64	87.879	Ovis_aries
ENSOPRG00000011803	USB1	72	87.879	ENSPPAG00000042137	USB1	76	76.667	Pan_paniscus
ENSOPRG00000011803	USB1	72	87.879	ENSPPRG00000024797	USB1	63	87.879	Panthera_pardus
ENSOPRG00000011803	USB1	72	87.879	ENSPTIG00000007506	USB1	63	87.879	Panthera_tigris_altaica
ENSOPRG00000011803	USB1	66	87.879	ENSPTRG00000008172	USB1	70	87.879	Pan_troglodytes
ENSOPRG00000011803	USB1	72	87.879	ENSPANG00000025138	USB1	75	78.814	Papio_anubis
ENSOPRG00000011803	USB1	54	53.175	ENSPMGG00000017725	usb1	72	49.593	Periophthalmus_magnuspinnatus
ENSOPRG00000011803	USB1	72	94.118	ENSPEMG00000016183	Usb1	62	94.118	Peromyscus_maniculatus_bairdii
ENSOPRG00000011803	USB1	100	37.179	ENSPMAG00000000462	usb1	99	37.179	Petromyzon_marinus
ENSOPRG00000011803	USB1	56	52.308	ENSPREG00000001047	usb1	53	53.846	Poecilia_reticulata
ENSOPRG00000011803	USB1	58	75.556	ENSPPYG00000007401	USB1	54	75.556	Pongo_abelii
ENSOPRG00000011803	USB1	72	88.235	ENSPCOG00000022612	USB1	75	79.661	Propithecus_coquereli
ENSOPRG00000011803	USB1	69	88.235	ENSPVAG00000004613	USB1	62	88.235	Pteropus_vampyrus
ENSOPRG00000011803	USB1	72	97.059	ENSRNOG00000013216	Usb1	63	97.059	Rattus_norvegicus
ENSOPRG00000011803	USB1	66	87.879	ENSRBIG00000044466	USB1	70	87.879	Rhinopithecus_bieti
ENSOPRG00000011803	USB1	72	87.879	ENSRROG00000029211	USB1	75	78.814	Rhinopithecus_roxellana
ENSOPRG00000011803	USB1	72	84.848	ENSSBOG00000029362	USB1	74	80.342	Saimiri_boliviensis_boliviensis
ENSOPRG00000011803	USB1	67	73.529	ENSSHAG00000006993	USB1	66	73.529	Sarcophilus_harrisii
ENSOPRG00000011803	USB1	54	52.381	ENSSDUG00000002949	usb1	73	53.211	Seriola_dumerili
ENSOPRG00000011803	USB1	64	62.931	ENSSPUG00000006741	USB1	70	62.931	Sphenodon_punctatus
ENSOPRG00000011803	USB1	72	85.294	ENSSSCG00000002807	USB1	62	85.294	Sus_scrofa
ENSOPRG00000011803	USB1	64	64.035	ENSTGUG00000004792	USB1	62	62.097	Taeniopygia_guttata
ENSOPRG00000011803	USB1	72	79.412	ENSTBEG00000001507	USB1	72	79.412	Tupaia_belangeri
ENSOPRG00000011803	USB1	72	84.848	ENSUAMG00000016823	USB1	62	84.848	Ursus_americanus
ENSOPRG00000011803	USB1	64	84.848	ENSUMAG00000021369	USB1	70	84.848	Ursus_maritimus
ENSOPRG00000011803	USB1	72	87.500	ENSVVUG00000023700	USB1	64	87.500	Vulpes_vulpes
ENSOPRG00000011803	USB1	66	57.025	ENSXETG00000013795	usb1	94	38.983	Xenopus_tropicalis