EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOPRG00000013663 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Ochotona_princeps
Status: putative
Strand: Plus strand
Length: 12418 bases
Position: chrGeneScaffold_1938:47440-59857
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOPRP00000012461	zf-CCCH	PF00642.24	1.8e-20	1	2
ENSOPRP00000012461	zf-CCCH	PF00642.24	1.8e-20	2	2
ENSOPRP00000012461	zf-CCHC	PF00098.23	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOPRT00000013657	CPSF4-201	810	-	ENSOPRP00000012461	269 (aa)	-	UPI0001776175

Gene Model

Click here to download ENSOPRG00000013663's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOPRG00000013663's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOPRG00000013663	CPSF4	100	98.885	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSOPRG00000013663	CPSF4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSOPRG00000013663	CPSF4	100	99.257	ENSAMEG00000006252	CPSF4	100	99.257	Ailuropoda_melanoleuca
ENSOPRG00000013663	CPSF4	100	79.182	ENSACIG00000009248	cpsf4	100	77.323	Amphilophus_citrinellus
ENSOPRG00000013663	CPSF4	100	84.444	ENSAOCG00000019616	cpsf4	100	84.444	Amphiprion_ocellaris
ENSOPRG00000013663	CPSF4	100	84.444	ENSAPEG00000011679	cpsf4	100	84.444	Amphiprion_percula
ENSOPRG00000013663	CPSF4	100	83.824	ENSATEG00000007010	cpsf4	100	83.824	Anabas_testudineus
ENSOPRG00000013663	CPSF4	100	92.937	ENSACAG00000012941	CPSF4	89	92.937	Anolis_carolinensis
ENSOPRG00000013663	CPSF4	100	98.885	ENSANAG00000021360	CPSF4	100	98.885	Aotus_nancymaae
ENSOPRG00000013663	CPSF4	100	83.333	ENSACLG00000010374	cpsf4	100	83.333	Astatotilapia_calliptera
ENSOPRG00000013663	CPSF4	100	84.871	ENSAMXG00000031647	cpsf4	100	85.609	Astyanax_mexicanus
ENSOPRG00000013663	CPSF4	100	88.848	ENSBTAG00000002090	CPSF4	100	88.848	Bos_taurus
ENSOPRG00000013663	CPSF4	100	98.885	ENSCJAG00000015826	CPSF4	100	98.885	Callithrix_jacchus
ENSOPRG00000013663	CPSF4	100	98.885	ENSCAFG00000015036	CPSF4	100	98.885	Canis_familiaris
ENSOPRG00000013663	CPSF4	100	92.565	ENSCAFG00020014462	CPSF4	100	92.565	Canis_lupus_dingo
ENSOPRG00000013663	CPSF4	100	98.513	ENSCHIG00000014313	CPSF4	100	98.513	Capra_hircus
ENSOPRG00000013663	CPSF4	100	89.219	ENSTSYG00000005712	-	100	89.219	Carlito_syrichta
ENSOPRG00000013663	CPSF4	89	82.158	ENSTSYG00000008195	-	99	79.200	Carlito_syrichta
ENSOPRG00000013663	CPSF4	100	81.481	ENSTSYG00000014604	-	100	78.889	Carlito_syrichta
ENSOPRG00000013663	CPSF4	81	99.541	ENSCAPG00000013881	CPSF4	87	99.541	Cavia_aperea
ENSOPRG00000013663	CPSF4	100	89.963	ENSCPOG00000001783	CPSF4	100	89.963	Cavia_porcellus
ENSOPRG00000013663	CPSF4	100	98.885	ENSCCAG00000028291	CPSF4	100	98.885	Cebus_capucinus
ENSOPRG00000013663	CPSF4	100	98.885	ENSCATG00000038440	CPSF4	100	98.885	Cercocebus_atys
ENSOPRG00000013663	CPSF4	100	99.628	ENSCLAG00000007050	CPSF4	100	99.628	Chinchilla_lanigera
ENSOPRG00000013663	CPSF4	100	98.885	ENSCSAG00000017795	CPSF4	100	98.885	Chlorocebus_sabaeus
ENSOPRG00000013663	CPSF4	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSOPRG00000013663	CPSF4	61	80.606	ENSCPBG00000010269	-	100	80.120	Chrysemys_picta_bellii
ENSOPRG00000013663	CPSF4	97	55.556	ENSCING00000021080	-	97	55.556	Ciona_intestinalis
ENSOPRG00000013663	CPSF4	96	53.004	ENSCSAVG00000011469	-	97	52.669	Ciona_savignyi
ENSOPRG00000013663	CPSF4	100	98.885	ENSCANG00000019384	CPSF4	100	98.885	Colobus_angolensis_palliatus
ENSOPRG00000013663	CPSF4	100	89.963	ENSCGRG00001024184	Cpsf4	100	89.963	Cricetulus_griseus_chok1gshd
ENSOPRG00000013663	CPSF4	100	99.257	ENSCGRG00000013892	Cpsf4	100	99.257	Cricetulus_griseus_crigri
ENSOPRG00000013663	CPSF4	100	83.333	ENSCSEG00000019055	cpsf4	100	83.333	Cynoglossus_semilaevis
ENSOPRG00000013663	CPSF4	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSOPRG00000013663	CPSF4	100	84.871	ENSDARG00000020217	cpsf4	100	84.871	Danio_rerio
ENSOPRG00000013663	CPSF4	100	98.885	ENSDNOG00000006344	CPSF4	100	98.885	Dasypus_novemcinctus
ENSOPRG00000013663	CPSF4	81	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSOPRG00000013663	CPSF4	100	54.452	FBgn0015621	Clp	99	53.767	Drosophila_melanogaster
ENSOPRG00000013663	CPSF4	70	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSOPRG00000013663	CPSF4	99	64.794	ENSEBUG00000012552	cpsf4	98	64.794	Eptatretus_burgeri
ENSOPRG00000013663	CPSF4	100	89.963	ENSEASG00005002487	CPSF4	100	89.963	Equus_asinus_asinus
ENSOPRG00000013663	CPSF4	100	99.257	ENSECAG00000007525	CPSF4	100	99.257	Equus_caballus
ENSOPRG00000013663	CPSF4	63	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSOPRG00000013663	CPSF4	100	82.482	ENSELUG00000011481	cpsf4	100	80.292	Esox_lucius
ENSOPRG00000013663	CPSF4	100	99.257	ENSFCAG00000015070	CPSF4	100	99.257	Felis_catus
ENSOPRG00000013663	CPSF4	100	85.502	ENSFALG00000013799	CPSF4	100	84.015	Ficedula_albicollis
ENSOPRG00000013663	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSOPRG00000013663	CPSF4	90	98.765	ENSFDAG00000014092	CPSF4	100	98.765	Fukomys_damarensis
ENSOPRG00000013663	CPSF4	100	82.593	ENSFHEG00000010880	cpsf4	100	82.593	Fundulus_heteroclitus
ENSOPRG00000013663	CPSF4	100	77.122	ENSGMOG00000002330	cpsf4	100	75.646	Gadus_morhua
ENSOPRG00000013663	CPSF4	99	38.421	ENSGALG00000004441	-	98	36.842	Gallus_gallus
ENSOPRG00000013663	CPSF4	100	85.502	ENSGALG00000004714	CPSF4	100	84.387	Gallus_gallus
ENSOPRG00000013663	CPSF4	100	82.222	ENSGAFG00000010580	cpsf4	100	82.222	Gambusia_affinis
ENSOPRG00000013663	CPSF4	100	76.753	ENSGACG00000007792	cpsf4	100	76.015	Gasterosteus_aculeatus
ENSOPRG00000013663	CPSF4	100	95.167	ENSGAGG00000021835	CPSF4	100	95.167	Gopherus_agassizii
ENSOPRG00000013663	CPSF4	68	76.374	ENSGAGG00000020579	-	92	80.606	Gopherus_agassizii
ENSOPRG00000013663	CPSF4	100	98.885	ENSGGOG00000015131	CPSF4	100	98.885	Gorilla_gorilla
ENSOPRG00000013663	CPSF4	100	83.333	ENSHBUG00000013699	cpsf4	100	83.333	Haplochromis_burtoni
ENSOPRG00000013663	CPSF4	100	97.417	ENSHGLG00000017150	CPSF4	100	97.417	Heterocephalus_glaber_female
ENSOPRG00000013663	CPSF4	78	65.550	ENSHGLG00100017302	-	100	53.532	Heterocephalus_glaber_male
ENSOPRG00000013663	CPSF4	87	95.763	ENSHGLG00100009215	-	100	95.763	Heterocephalus_glaber_male
ENSOPRG00000013663	CPSF4	100	80.370	ENSHCOG00000004397	cpsf4	100	80.370	Hippocampus_comes
ENSOPRG00000013663	CPSF4	100	83.764	ENSIPUG00000017147	cpsf4	100	84.926	Ictalurus_punctatus
ENSOPRG00000013663	CPSF4	100	99.257	ENSSTOG00000001688	CPSF4	100	99.257	Ictidomys_tridecemlineatus
ENSOPRG00000013663	CPSF4	100	99.628	ENSJJAG00000019426	Cpsf4	100	99.628	Jaculus_jaculus
ENSOPRG00000013663	CPSF4	100	81.481	ENSKMAG00000015642	cpsf4	100	81.481	Kryptolebias_marmoratus
ENSOPRG00000013663	CPSF4	100	60.370	ENSLACG00000018470	-	100	60.370	Latimeria_chalumnae
ENSOPRG00000013663	CPSF4	100	88.889	ENSLACG00000010938	CPSF4	100	88.889	Latimeria_chalumnae
ENSOPRG00000013663	CPSF4	100	89.219	ENSLOCG00000004814	cpsf4	100	89.219	Lepisosteus_oculatus
ENSOPRG00000013663	CPSF4	100	98.885	ENSLAFG00000000159	CPSF4	100	98.885	Loxodonta_africana
ENSOPRG00000013663	CPSF4	100	98.885	ENSMFAG00000001462	CPSF4	100	98.885	Macaca_fascicularis
ENSOPRG00000013663	CPSF4	100	98.885	ENSMMUG00000019191	CPSF4	100	98.885	Macaca_mulatta
ENSOPRG00000013663	CPSF4	100	98.885	ENSMNEG00000032306	CPSF4	100	98.885	Macaca_nemestrina
ENSOPRG00000013663	CPSF4	100	98.885	ENSMLEG00000034721	CPSF4	100	98.885	Mandrillus_leucophaeus
ENSOPRG00000013663	CPSF4	100	84.074	ENSMAMG00000006244	cpsf4	100	84.074	Mastacembelus_armatus
ENSOPRG00000013663	CPSF4	100	83.333	ENSMZEG00005007515	cpsf4	100	83.333	Maylandia_zebra
ENSOPRG00000013663	CPSF4	87	84.255	ENSMGAG00000004235	CPSF4	100	82.979	Meleagris_gallopavo
ENSOPRG00000013663	CPSF4	100	99.257	ENSMAUG00000021253	Cpsf4	100	99.257	Mesocricetus_auratus
ENSOPRG00000013663	CPSF4	100	98.885	ENSMICG00000017429	CPSF4	100	98.885	Microcebus_murinus
ENSOPRG00000013663	CPSF4	100	99.257	ENSMOCG00000014901	Cpsf4	100	99.257	Microtus_ochrogaster
ENSOPRG00000013663	CPSF4	100	83.704	ENSMMOG00000001813	cpsf4	100	83.704	Mola_mola
ENSOPRG00000013663	CPSF4	100	96.654	ENSMODG00000001367	CPSF4	100	96.654	Monodelphis_domestica
ENSOPRG00000013663	CPSF4	100	82.222	ENSMALG00000012611	cpsf4	100	82.593	Monopterus_albus
ENSOPRG00000013663	CPSF4	100	99.257	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.257	Mus_caroli
ENSOPRG00000013663	CPSF4	100	99.257	ENSMUSG00000029625	Cpsf4	100	99.257	Mus_musculus
ENSOPRG00000013663	CPSF4	100	99.257	MGP_PahariEiJ_G0024581	Cpsf4	100	99.257	Mus_pahari
ENSOPRG00000013663	CPSF4	100	99.257	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.257	Mus_spretus
ENSOPRG00000013663	CPSF4	100	99.257	ENSMPUG00000016508	CPSF4	100	99.257	Mustela_putorius_furo
ENSOPRG00000013663	CPSF4	87	88.511	ENSMLUG00000010980	CPSF4	100	88.511	Myotis_lucifugus
ENSOPRG00000013663	CPSF4	100	98.885	ENSNGAG00000001567	Cpsf4	100	98.885	Nannospalax_galili
ENSOPRG00000013663	CPSF4	91	82.927	ENSNBRG00000003943	cpsf4	98	82.927	Neolamprologus_brichardi
ENSOPRG00000013663	CPSF4	100	95.911	ENSNLEG00000011074	CPSF4	100	95.911	Nomascus_leucogenys
ENSOPRG00000013663	CPSF4	100	96.654	ENSMEUG00000006955	CPSF4	100	96.654	Notamacropus_eugenii
ENSOPRG00000013663	CPSF4	100	99.257	ENSODEG00000011181	-	100	99.257	Octodon_degus
ENSOPRG00000013663	CPSF4	100	74.359	ENSODEG00000009779	-	100	74.359	Octodon_degus
ENSOPRG00000013663	CPSF4	99	76.604	ENSODEG00000018283	-	91	74.340	Octodon_degus
ENSOPRG00000013663	CPSF4	100	83.333	ENSONIG00000008495	cpsf4	100	83.333	Oreochromis_niloticus
ENSOPRG00000013663	CPSF4	100	54.317	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSOPRG00000013663	CPSF4	87	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSOPRG00000013663	CPSF4	100	99.257	ENSOCUG00000002437	CPSF4	70	99.257	Oryctolagus_cuniculus
ENSOPRG00000013663	CPSF4	100	82.900	ENSORLG00000022798	cpsf4	100	82.900	Oryzias_latipes
ENSOPRG00000013663	CPSF4	100	82.900	ENSORLG00020008548	cpsf4	100	82.900	Oryzias_latipes_hni
ENSOPRG00000013663	CPSF4	100	82.528	ENSORLG00015019575	cpsf4	100	82.528	Oryzias_latipes_hsok
ENSOPRG00000013663	CPSF4	100	81.413	ENSOMEG00000005176	cpsf4	100	81.413	Oryzias_melastigma
ENSOPRG00000013663	CPSF4	100	99.257	ENSOGAG00000010884	CPSF4	100	99.257	Otolemur_garnettii
ENSOPRG00000013663	CPSF4	100	87.912	ENSOARG00000018668	CPSF4	100	87.546	Ovis_aries
ENSOPRG00000013663	CPSF4	100	98.513	ENSPPAG00000043355	CPSF4	100	98.513	Pan_paniscus
ENSOPRG00000013663	CPSF4	100	99.257	ENSPPRG00000003134	CPSF4	100	99.257	Panthera_pardus
ENSOPRG00000013663	CPSF4	90	99.174	ENSPTIG00000005604	CPSF4	90	99.174	Panthera_tigris_altaica
ENSOPRG00000013663	CPSF4	100	98.513	ENSPTRG00000019453	CPSF4	100	98.513	Pan_troglodytes
ENSOPRG00000013663	CPSF4	100	98.885	ENSPANG00000023123	CPSF4	100	98.885	Papio_anubis
ENSOPRG00000013663	CPSF4	100	83.577	ENSPKIG00000014278	cpsf4	100	83.577	Paramormyrops_kingsleyae
ENSOPRG00000013663	CPSF4	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSOPRG00000013663	CPSF4	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSOPRG00000013663	CPSF4	100	72.491	ENSPMGG00000017735	cpsf4	100	71.218	Periophthalmus_magnuspinnatus
ENSOPRG00000013663	CPSF4	100	99.257	ENSPEMG00000004508	Cpsf4	100	99.257	Peromyscus_maniculatus_bairdii
ENSOPRG00000013663	CPSF4	100	96.654	ENSPCIG00000024776	CPSF4	100	96.654	Phascolarctos_cinereus
ENSOPRG00000013663	CPSF4	100	82.222	ENSPFOG00000014912	cpsf4	100	82.222	Poecilia_formosa
ENSOPRG00000013663	CPSF4	100	75.093	ENSPLAG00000009599	cpsf4	100	75.093	Poecilia_latipinna
ENSOPRG00000013663	CPSF4	100	82.222	ENSPMEG00000009790	cpsf4	100	82.222	Poecilia_mexicana
ENSOPRG00000013663	CPSF4	100	81.481	ENSPREG00000018166	cpsf4	100	78.810	Poecilia_reticulata
ENSOPRG00000013663	CPSF4	87	98.291	ENSPPYG00000017378	CPSF4	100	98.291	Pongo_abelii
ENSOPRG00000013663	CPSF4	100	98.141	ENSPCAG00000001892	CPSF4	100	98.141	Procavia_capensis
ENSOPRG00000013663	CPSF4	100	98.885	ENSPCOG00000012771	CPSF4	100	98.885	Propithecus_coquereli
ENSOPRG00000013663	CPSF4	100	92.565	ENSPVAG00000007531	CPSF4	100	92.565	Pteropus_vampyrus
ENSOPRG00000013663	CPSF4	100	83.333	ENSPNYG00000018559	cpsf4	100	83.333	Pundamilia_nyererei
ENSOPRG00000013663	CPSF4	100	85.978	ENSPNAG00000003736	cpsf4	100	86.716	Pygocentrus_nattereri
ENSOPRG00000013663	CPSF4	100	89.591	ENSRNOG00000000985	Cpsf4	100	89.591	Rattus_norvegicus
ENSOPRG00000013663	CPSF4	87	99.145	ENSRBIG00000033886	CPSF4	100	99.145	Rhinopithecus_bieti
ENSOPRG00000013663	CPSF4	100	89.591	ENSRROG00000040431	CPSF4	100	89.591	Rhinopithecus_roxellana
ENSOPRG00000013663	CPSF4	100	98.885	ENSSBOG00000020493	CPSF4	100	98.885	Saimiri_boliviensis_boliviensis
ENSOPRG00000013663	CPSF4	100	96.654	ENSSHAG00000011533	CPSF4	100	96.654	Sarcophilus_harrisii
ENSOPRG00000013663	CPSF4	100	84.783	ENSSFOG00015007883	cpsf4	100	85.507	Scleropages_formosus
ENSOPRG00000013663	CPSF4	100	78.810	ENSSMAG00000006374	cpsf4	100	77.323	Scophthalmus_maximus
ENSOPRG00000013663	CPSF4	100	82.963	ENSSDUG00000018887	cpsf4	100	82.963	Seriola_dumerili
ENSOPRG00000013663	CPSF4	100	82.963	ENSSLDG00000019078	cpsf4	100	82.963	Seriola_lalandi_dorsalis
ENSOPRG00000013663	CPSF4	87	99.573	ENSSARG00000012416	CPSF4	100	99.573	Sorex_araneus
ENSOPRG00000013663	CPSF4	96	59.615	ENSSPUG00000014803	-	97	59.302	Sphenodon_punctatus
ENSOPRG00000013663	CPSF4	100	93.680	ENSSPUG00000003549	CPSF4	100	93.680	Sphenodon_punctatus
ENSOPRG00000013663	CPSF4	100	78.810	ENSSPAG00000006174	cpsf4	100	76.580	Stegastes_partitus
ENSOPRG00000013663	CPSF4	100	89.963	ENSSSCG00000026896	CPSF4	100	89.963	Sus_scrofa
ENSOPRG00000013663	CPSF4	100	84.502	ENSTGUG00000007552	CPSF4	100	83.026	Taeniopygia_guttata
ENSOPRG00000013663	CPSF4	100	80.952	ENSTRUG00000024220	cpsf4	100	80.952	Takifugu_rubripes
ENSOPRG00000013663	CPSF4	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSOPRG00000013663	CPSF4	87	89.744	ENSTBEG00000011406	CPSF4	100	89.744	Tupaia_belangeri
ENSOPRG00000013663	CPSF4	100	78.067	ENSTTRG00000003007	CPSF4	100	78.067	Tursiops_truncatus
ENSOPRG00000013663	CPSF4	92	88.664	ENSUAMG00000008051	CPSF4	85	88.664	Ursus_americanus
ENSOPRG00000013663	CPSF4	100	89.591	ENSUMAG00000009474	CPSF4	100	89.591	Ursus_maritimus
ENSOPRG00000013663	CPSF4	100	89.591	ENSVVUG00000008824	CPSF4	100	89.591	Vulpes_vulpes
ENSOPRG00000013663	CPSF4	100	87.814	ENSXETG00000009892	cpsf4	100	87.814	Xenopus_tropicalis
ENSOPRG00000013663	CPSF4	99	60.448	ENSXETG00000004641	cpsf4l	99	60.448	Xenopus_tropicalis
ENSOPRG00000013663	CPSF4	100	81.852	ENSXCOG00000016040	cpsf4	100	81.852	Xiphophorus_couchianus
ENSOPRG00000013663	CPSF4	100	82.222	ENSXMAG00000024670	cpsf4	100	82.222	Xiphophorus_maculatus