EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSOPRG00000014018 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Ochotona_princeps
Status: putative
Strand: Plus strand
Length: 8586 bases
Position: chrGeneScaffold_13:7221-15806
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSOPRP00000012816	UPF1_Zn_bind	PF09416.10	3.1e-75	1	1
ENSOPRP00000012816	ResIII	PF04851.15	1.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSOPRT00000014044	UPF1-201	3102	-	ENSOPRP00000012816	1033 (aa)	-	UPI00017A1FCF

Gene Model

Click here to download ENSOPRG00000014018's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSOPRG00000014018's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSOPRG00000014018	UPF1	100	91.547	ENSG00000005007	UPF1	93	91.547	Homo_sapiens
ENSOPRG00000014018	UPF1	99	87.812	ENSAPOG00000010916	-	95	87.908	Acanthochromis_polyacanthus
ENSOPRG00000014018	UPF1	99	86.312	ENSAPOG00000023773	upf1	95	86.890	Acanthochromis_polyacanthus
ENSOPRG00000014018	UPF1	99	90.771	ENSAMEG00000011474	UPF1	93	90.771	Ailuropoda_melanoleuca
ENSOPRG00000014018	UPF1	98	87.707	ENSACIG00000010985	-	100	87.805	Amphilophus_citrinellus
ENSOPRG00000014018	UPF1	99	86.233	ENSACIG00000019949	upf1	95	86.986	Amphilophus_citrinellus
ENSOPRG00000014018	UPF1	99	87.716	ENSAOCG00000006352	-	100	85.131	Amphiprion_ocellaris
ENSOPRG00000014018	UPF1	99	85.864	ENSAOCG00000018519	upf1	95	86.837	Amphiprion_ocellaris
ENSOPRG00000014018	UPF1	99	87.716	ENSAPEG00000006292	-	100	85.131	Amphiprion_percula
ENSOPRG00000014018	UPF1	99	85.864	ENSAPEG00000016344	upf1	95	86.837	Amphiprion_percula
ENSOPRG00000014018	UPF1	99	87.716	ENSATEG00000016606	-	95	87.812	Anabas_testudineus
ENSOPRG00000014018	UPF1	88	90.033	ENSATEG00000017867	upf1	95	86.295	Anabas_testudineus
ENSOPRG00000014018	UPF1	99	90.105	ENSAPLG00000009175	UPF1	99	90.105	Anas_platyrhynchos
ENSOPRG00000014018	UPF1	100	89.259	ENSANAG00000024107	UPF1	95	89.259	Aotus_nancymaae
ENSOPRG00000014018	UPF1	99	86.138	ENSACLG00000007181	upf1	95	86.890	Astatotilapia_calliptera
ENSOPRG00000014018	UPF1	99	86.948	ENSACLG00000022630	-	95	87.524	Astatotilapia_calliptera
ENSOPRG00000014018	UPF1	99	87.919	ENSAMXG00000042187	upf1	95	88.495	Astyanax_mexicanus
ENSOPRG00000014018	UPF1	99	90.771	ENSBTAG00000020922	UPF1	93	90.771	Bos_taurus
ENSOPRG00000014018	UPF1	79	54.513	WBGene00004880	smg-2	77	54.513	Caenorhabditis_elegans
ENSOPRG00000014018	UPF1	100	90.589	ENSCJAG00000019627	UPF1	93	90.589	Callithrix_jacchus
ENSOPRG00000014018	UPF1	99	90.771	ENSCAFG00000014578	UPF1	93	90.771	Canis_familiaris
ENSOPRG00000014018	UPF1	99	91.731	ENSCAFG00020012347	UPF1	93	91.731	Canis_lupus_dingo
ENSOPRG00000014018	UPF1	99	91.731	ENSCHIG00000011018	UPF1	93	91.731	Capra_hircus
ENSOPRG00000014018	UPF1	100	90.684	ENSTSYG00000008877	UPF1	98	90.684	Carlito_syrichta
ENSOPRG00000014018	UPF1	100	90.589	ENSCAPG00000005758	UPF1	95	90.589	Cavia_aperea
ENSOPRG00000014018	UPF1	99	90.553	ENSCPOG00000025463	UPF1	94	90.553	Cavia_porcellus
ENSOPRG00000014018	UPF1	100	91.547	ENSCCAG00000032175	UPF1	94	90.589	Cebus_capucinus
ENSOPRG00000014018	UPF1	99	90.544	ENSCATG00000040306	UPF1	98	90.553	Cercocebus_atys
ENSOPRG00000014018	UPF1	100	90.589	ENSCLAG00000004037	UPF1	100	90.589	Chinchilla_lanigera
ENSOPRG00000014018	UPF1	100	91.547	ENSCSAG00000005276	UPF1	93	91.547	Chlorocebus_sabaeus
ENSOPRG00000014018	UPF1	99	90.796	ENSCPBG00000012513	UPF1	94	90.796	Chrysemys_picta_bellii
ENSOPRG00000014018	UPF1	73	78.637	ENSCING00000021399	-	91	78.637	Ciona_intestinalis
ENSOPRG00000014018	UPF1	99	69.665	ENSCSAVG00000006533	-	94	69.761	Ciona_savignyi
ENSOPRG00000014018	UPF1	100	90.589	ENSCANG00000029819	UPF1	97	90.589	Colobus_angolensis_palliatus
ENSOPRG00000014018	UPF1	100	91.258	ENSCGRG00001021067	Upf1	94	91.258	Cricetulus_griseus_chok1gshd
ENSOPRG00000014018	UPF1	100	90.304	ENSCGRG00000013480	Upf1	98	90.304	Cricetulus_griseus_crigri
ENSOPRG00000014018	UPF1	99	81.801	ENSCSEG00000017239	upf1	95	82.133	Cynoglossus_semilaevis
ENSOPRG00000014018	UPF1	99	87.512	ENSCSEG00000016159	-	95	87.512	Cynoglossus_semilaevis
ENSOPRG00000014018	UPF1	99	87.428	ENSCVAG00000010561	upf1	95	87.428	Cyprinodon_variegatus
ENSOPRG00000014018	UPF1	99	87.919	ENSDARG00000016302	upf1	95	88.495	Danio_rerio
ENSOPRG00000014018	UPF1	100	87.844	ENSDORG00000009984	Upf1	95	87.844	Dipodomys_ordii
ENSOPRG00000014018	UPF1	83	71.068	FBgn0030354	Upf1	75	69.921	Drosophila_melanogaster
ENSOPRG00000014018	UPF1	52	81.818	ENSEBUG00000010069	upf1	89	81.818	Eptatretus_burgeri
ENSOPRG00000014018	UPF1	99	91.827	ENSEASG00005006549	UPF1	93	91.827	Equus_asinus_asinus
ENSOPRG00000014018	UPF1	99	91.827	ENSECAG00000010639	UPF1	93	91.827	Equus_caballus
ENSOPRG00000014018	UPF1	99	85.782	ENSELUG00000020917	upf1	95	86.069	Esox_lucius
ENSOPRG00000014018	UPF1	99	87.226	ENSELUG00000012916	-	95	87.238	Esox_lucius
ENSOPRG00000014018	UPF1	99	90.676	ENSFCAG00000009757	UPF1	93	90.676	Felis_catus
ENSOPRG00000014018	UPF1	99	90.613	ENSFALG00000009312	UPF1	96	90.613	Ficedula_albicollis
ENSOPRG00000014018	UPF1	100	90.494	ENSFDAG00000014816	UPF1	100	90.494	Fukomys_damarensis
ENSOPRG00000014018	UPF1	99	83.761	ENSFHEG00000006428	upf1	94	83.761	Fundulus_heteroclitus
ENSOPRG00000014018	UPF1	91	89.292	ENSFHEG00000016276	-	96	90.381	Fundulus_heteroclitus
ENSOPRG00000014018	UPF1	99	85.446	ENSGMOG00000007541	upf1	95	87.643	Gadus_morhua
ENSOPRG00000014018	UPF1	99	91.058	ENSGALG00000003220	UPF1	93	91.058	Gallus_gallus
ENSOPRG00000014018	UPF1	65	96.296	ENSGAFG00000015443	-	84	96.296	Gambusia_affinis
ENSOPRG00000014018	UPF1	99	87.320	ENSGAFG00000004831	upf1	95	87.320	Gambusia_affinis
ENSOPRG00000014018	UPF1	99	91.058	ENSGAGG00000022217	UPF1	94	91.058	Gopherus_agassizii
ENSOPRG00000014018	UPF1	100	91.547	ENSGGOG00000002608	UPF1	99	91.547	Gorilla_gorilla
ENSOPRG00000014018	UPF1	86	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSOPRG00000014018	UPF1	86	89.157	ENSHBUG00000014694	upf1	90	89.157	Haplochromis_burtoni
ENSOPRG00000014018	UPF1	100	90.399	ENSHGLG00000010900	UPF1	93	90.399	Heterocephalus_glaber_female
ENSOPRG00000014018	UPF1	100	88.688	ENSHGLG00100005904	UPF1	97	88.688	Heterocephalus_glaber_male
ENSOPRG00000014018	UPF1	99	86.744	ENSHCOG00000008918	upf1	100	86.750	Hippocampus_comes
ENSOPRG00000014018	UPF1	99	88.111	ENSIPUG00000005108	UPF1	95	88.591	Ictalurus_punctatus
ENSOPRG00000014018	UPF1	100	91.354	ENSSTOG00000009196	UPF1	94	90.399	Ictidomys_tridecemlineatus
ENSOPRG00000014018	UPF1	100	90.114	ENSJJAG00000023151	Upf1	94	90.114	Jaculus_jaculus
ENSOPRG00000014018	UPF1	99	87.716	ENSKMAG00000004962	upf1	95	87.716	Kryptolebias_marmoratus
ENSOPRG00000014018	UPF1	99	87.344	ENSLBEG00000027848	-	95	87.440	Labrus_bergylta
ENSOPRG00000014018	UPF1	88	89.923	ENSLBEG00000014862	upf1	95	86.364	Labrus_bergylta
ENSOPRG00000014018	UPF1	67	93.257	ENSLACG00000008482	UPF1	100	93.687	Latimeria_chalumnae
ENSOPRG00000014018	UPF1	99	89.817	ENSLOCG00000002072	upf1	95	89.914	Lepisosteus_oculatus
ENSOPRG00000014018	UPF1	99	90.485	ENSLAFG00000014963	UPF1	93	90.485	Loxodonta_africana
ENSOPRG00000014018	UPF1	100	90.589	ENSMFAG00000037748	UPF1	94	90.589	Macaca_fascicularis
ENSOPRG00000014018	UPF1	100	90.589	ENSMMUG00000023286	UPF1	94	90.589	Macaca_mulatta
ENSOPRG00000014018	UPF1	100	90.589	ENSMNEG00000000046	UPF1	94	90.589	Macaca_nemestrina
ENSOPRG00000014018	UPF1	100	90.589	ENSMLEG00000028404	UPF1	100	90.589	Mandrillus_leucophaeus
ENSOPRG00000014018	UPF1	88	90.033	ENSMAMG00000006229	upf1	95	86.295	Mastacembelus_armatus
ENSOPRG00000014018	UPF1	99	86.865	ENSMAMG00000006231	-	95	87.440	Mastacembelus_armatus
ENSOPRG00000014018	UPF1	99	86.948	ENSMZEG00005016386	-	95	87.524	Maylandia_zebra
ENSOPRG00000014018	UPF1	99	85.080	ENSMZEG00005003489	upf1	95	86.610	Maylandia_zebra
ENSOPRG00000014018	UPF1	99	89.639	ENSMGAG00000004745	UPF1	100	89.639	Meleagris_gallopavo
ENSOPRG00000014018	UPF1	100	90.304	ENSMAUG00000011398	Upf1	95	90.304	Mesocricetus_auratus
ENSOPRG00000014018	UPF1	100	91.835	ENSMICG00000001659	UPF1	93	91.835	Microcebus_murinus
ENSOPRG00000014018	UPF1	100	90.304	ENSMOCG00000005699	Upf1	94	90.304	Microtus_ochrogaster
ENSOPRG00000014018	UPF1	99	85.413	ENSMMOG00000007537	-	99	85.509	Mola_mola
ENSOPRG00000014018	UPF1	99	84.863	ENSMMOG00000007881	upf1	94	86.898	Mola_mola
ENSOPRG00000014018	UPF1	99	91.154	ENSMODG00000003689	UPF1	95	91.154	Monodelphis_domestica
ENSOPRG00000014018	UPF1	99	86.437	ENSMALG00000018100	-	95	86.533	Monopterus_albus
ENSOPRG00000014018	UPF1	99	86.455	ENSMALG00000000144	upf1	95	86.538	Monopterus_albus
ENSOPRG00000014018	UPF1	100	91.162	MGP_CAROLIEiJ_G0031142	Upf1	89	98.785	Mus_caroli
ENSOPRG00000014018	UPF1	100	91.162	ENSMUSG00000058301	Upf1	89	98.785	Mus_musculus
ENSOPRG00000014018	UPF1	100	91.162	MGP_PahariEiJ_G0021607	Upf1	89	98.785	Mus_pahari
ENSOPRG00000014018	UPF1	100	91.162	MGP_SPRETEiJ_G0032260	Upf1	89	98.785	Mus_spretus
ENSOPRG00000014018	UPF1	99	91.731	ENSMPUG00000015516	UPF1	93	91.731	Mustela_putorius_furo
ENSOPRG00000014018	UPF1	99	91.731	ENSMLUG00000012122	UPF1	93	91.731	Myotis_lucifugus
ENSOPRG00000014018	UPF1	100	90.114	ENSNGAG00000024107	Upf1	93	90.114	Nannospalax_galili
ENSOPRG00000014018	UPF1	96	96.341	ENSNBRG00000022069	-	100	87.147	Neolamprologus_brichardi
ENSOPRG00000014018	UPF1	99	84.226	ENSNBRG00000000670	upf1	95	84.976	Neolamprologus_brichardi
ENSOPRG00000014018	UPF1	100	84.681	ENSNLEG00000006062	UPF1	100	84.681	Nomascus_leucogenys
ENSOPRG00000014018	UPF1	76	91.429	ENSMEUG00000014146	-	71	91.429	Notamacropus_eugenii
ENSOPRG00000014018	UPF1	99	90.544	ENSODEG00000012426	UPF1	95	90.589	Octodon_degus
ENSOPRG00000014018	UPF1	99	85.175	ENSONIG00000010452	upf1	95	86.705	Oreochromis_niloticus
ENSOPRG00000014018	UPF1	99	87.044	ENSONIG00000012729	-	95	87.620	Oreochromis_niloticus
ENSOPRG00000014018	UPF1	99	89.269	ENSOANG00000004568	UPF1	93	89.554	Ornithorhynchus_anatinus
ENSOPRG00000014018	UPF1	99	87.236	ENSORLG00000008453	upf1	95	87.236	Oryzias_latipes
ENSOPRG00000014018	UPF1	99	87.236	ENSORLG00020014758	upf1	95	87.236	Oryzias_latipes_hni
ENSOPRG00000014018	UPF1	99	87.236	ENSORLG00015010165	upf1	100	83.155	Oryzias_latipes_hsok
ENSOPRG00000014018	UPF1	99	87.428	ENSOMEG00000003665	upf1	95	87.428	Oryzias_melastigma
ENSOPRG00000014018	UPF1	100	91.643	ENSOGAG00000012866	UPF1	93	91.643	Otolemur_garnettii
ENSOPRG00000014018	UPF1	96	90.039	ENSOARG00000010739	UPF1	93	90.039	Ovis_aries
ENSOPRG00000014018	UPF1	100	90.589	ENSPPAG00000043884	UPF1	96	90.589	Pan_paniscus
ENSOPRG00000014018	UPF1	99	90.676	ENSPPRG00000023470	UPF1	93	90.676	Panthera_pardus
ENSOPRG00000014018	UPF1	99	89.519	ENSPTIG00000010159	UPF1	99	89.519	Panthera_tigris_altaica
ENSOPRG00000014018	UPF1	100	90.589	ENSPTRG00000010721	UPF1	94	90.589	Pan_troglodytes
ENSOPRG00000014018	UPF1	100	90.589	ENSPANG00000008847	UPF1	94	90.589	Papio_anubis
ENSOPRG00000014018	UPF1	88	91.685	ENSPKIG00000006069	upf1	88	91.685	Paramormyrops_kingsleyae
ENSOPRG00000014018	UPF1	72	92.829	ENSPSIG00000009491	UPF1	98	92.829	Pelodiscus_sinensis
ENSOPRG00000014018	UPF1	87	89.171	ENSPMGG00000017327	upf1	95	84.895	Periophthalmus_magnuspinnatus
ENSOPRG00000014018	UPF1	100	90.304	ENSPEMG00000001085	Upf1	89	98.785	Peromyscus_maniculatus_bairdii
ENSOPRG00000014018	UPF1	99	83.349	ENSPMAG00000001206	upf1	94	83.349	Petromyzon_marinus
ENSOPRG00000014018	UPF1	99	91.154	ENSPCIG00000006156	UPF1	93	91.154	Phascolarctos_cinereus
ENSOPRG00000014018	UPF1	99	85.347	ENSPLAG00000018155	-	95	85.347	Poecilia_latipinna
ENSOPRG00000014018	UPF1	99	87.416	ENSPLAG00000016232	-	95	87.416	Poecilia_latipinna
ENSOPRG00000014018	UPF1	99	86.111	ENSPMEG00000011443	-	95	86.111	Poecilia_mexicana
ENSOPRG00000014018	UPF1	99	87.332	ENSPMEG00000016319	-	95	87.332	Poecilia_mexicana
ENSOPRG00000014018	UPF1	99	86.936	ENSPREG00000011247	-	95	87.224	Poecilia_reticulata
ENSOPRG00000014018	UPF1	99	85.837	ENSPREG00000009940	upf1	94	85.837	Poecilia_reticulata
ENSOPRG00000014018	UPF1	100	85.823	ENSPPYG00000009752	UPF1	93	85.823	Pongo_abelii
ENSOPRG00000014018	UPF1	64	99.663	ENSPCAG00000012962	UPF1	59	99.663	Procavia_capensis
ENSOPRG00000014018	UPF1	100	90.875	ENSPCOG00000023813	UPF1	94	90.875	Propithecus_coquereli
ENSOPRG00000014018	UPF1	66	100.000	ENSPVAG00000003183	UPF1	61	100.000	Pteropus_vampyrus
ENSOPRG00000014018	UPF1	99	86.948	ENSPNYG00000016731	-	95	87.524	Pundamilia_nyererei
ENSOPRG00000014018	UPF1	99	85.080	ENSPNYG00000003694	upf1	95	86.610	Pundamilia_nyererei
ENSOPRG00000014018	UPF1	99	88.015	ENSPNAG00000025614	upf1	95	88.591	Pygocentrus_nattereri
ENSOPRG00000014018	UPF1	100	91.162	ENSRNOG00000020134	Upf1	94	91.162	Rattus_norvegicus
ENSOPRG00000014018	UPF1	100	88.213	ENSRBIG00000013894	UPF1	98	90.471	Rhinopithecus_bieti
ENSOPRG00000014018	UPF1	100	90.589	ENSRROG00000040935	UPF1	98	90.471	Rhinopithecus_roxellana
ENSOPRG00000014018	UPF1	77	55.444	YMR080C	NAM7	82	55.444	Saccharomyces_cerevisiae
ENSOPRG00000014018	UPF1	99	90.476	ENSSBOG00000023632	UPF1	96	90.476	Saimiri_boliviensis_boliviensis
ENSOPRG00000014018	UPF1	99	90.028	ENSSHAG00000010499	UPF1	100	90.028	Sarcophilus_harrisii
ENSOPRG00000014018	UPF1	99	89.721	ENSSFOG00015021095	upf1	99	89.817	Scleropages_formosus
ENSOPRG00000014018	UPF1	99	87.344	ENSSMAG00000021018	-	95	87.440	Scophthalmus_maximus
ENSOPRG00000014018	UPF1	88	89.157	ENSSMAG00000005055	upf1	95	85.606	Scophthalmus_maximus
ENSOPRG00000014018	UPF1	99	87.728	ENSSDUG00000009629	-	95	87.824	Seriola_dumerili
ENSOPRG00000014018	UPF1	88	90.252	ENSSDUG00000013320	upf1	95	86.389	Seriola_dumerili
ENSOPRG00000014018	UPF1	88	90.252	ENSSLDG00000020868	upf1	95	86.667	Seriola_lalandi_dorsalis
ENSOPRG00000014018	UPF1	99	87.728	ENSSLDG00000006878	-	95	87.824	Seriola_lalandi_dorsalis
ENSOPRG00000014018	UPF1	99	90.865	ENSSPUG00000010538	UPF1	94	90.865	Sphenodon_punctatus
ENSOPRG00000014018	UPF1	99	87.704	ENSSPAG00000011521	-	95	87.704	Stegastes_partitus
ENSOPRG00000014018	UPF1	99	84.342	ENSSPAG00000000003	upf1	95	84.498	Stegastes_partitus
ENSOPRG00000014018	UPF1	99	91.731	ENSSSCG00000039301	UPF1	99	91.731	Sus_scrofa
ENSOPRG00000014018	UPF1	78	97.561	ENSTGUG00000001057	UPF1	86	97.561	Taeniopygia_guttata
ENSOPRG00000014018	UPF1	99	86.744	ENSTRUG00000005131	-	95	86.840	Takifugu_rubripes
ENSOPRG00000014018	UPF1	99	86.154	ENSTRUG00000000150	upf1	95	86.154	Takifugu_rubripes
ENSOPRG00000014018	UPF1	99	87.596	ENSTTRG00000011544	UPF1	93	87.596	Tursiops_truncatus
ENSOPRG00000014018	UPF1	99	91.635	ENSUAMG00000007093	UPF1	93	91.635	Ursus_americanus
ENSOPRG00000014018	UPF1	99	91.635	ENSUMAG00000006652	UPF1	99	91.635	Ursus_maritimus
ENSOPRG00000014018	UPF1	99	91.731	ENSVVUG00000007797	UPF1	93	91.731	Vulpes_vulpes
ENSOPRG00000014018	UPF1	99	75.924	ENSXETG00000013602	upf1	93	75.924	Xenopus_tropicalis
ENSOPRG00000014018	UPF1	96	85.104	ENSXCOG00000015275	-	91	85.104	Xiphophorus_couchianus
ENSOPRG00000014018	UPF1	99	87.488	ENSXCOG00000005764	-	100	87.488	Xiphophorus_couchianus
ENSOPRG00000014018	UPF1	99	85.441	ENSXMAG00000001703	-	95	85.441	Xiphophorus_maculatus
ENSOPRG00000014018	UPF1	99	87.140	ENSXMAG00000002540	-	95	87.140	Xiphophorus_maculatus