EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000000913 (Gene tree)
Gene ID: 101164046
Gene Symbol: si:ch73-63e15.2
Alias: -
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 51695 bases
Position: chr4:2622487-2674181
Accession: 101164046
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000040669	ResIII	PF04851.15	2.9e-07	1	1
ENSORLP00000036965	ResIII	PF04851.15	3.1e-07	1	1
ENSORLP00000001116	ResIII	PF04851.15	3.4e-07	1	1
ENSORLP00000037396	ResIII	PF04851.15	3.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000043398	-	5428	XM_023953942	ENSORLP00000036965	1474 (aa)	XP_023809710	-
ENSORLT00000043217	-	5347	-	ENSORLP00000040669	1447 (aa)	-	-
ENSORLT00000042216	-	5060	XM_023953937	ENSORLP00000037396	1557 (aa)	XP_023809705	UPI000CE248FB
ENSORLT00000001117	-	4721	-	ENSORLP00000001116	1548 (aa)	-	H2L5N4

Gene Model

Click here to download ENSORLG00000000913's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000000913's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000000913	si:ch73-63e15.2	65	64.399	ENSORLG00000001593	sbno1	70	65.138

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000000913	si:ch73-63e15.2	78	66.525	ENSG00000064932	SBNO2	88	67.468	Homo_sapiens
ENSORLG00000000913	si:ch73-63e15.2	99	79.662	ENSAPOG00000003185	si:ch73-63e15.2	100	79.094	Acanthochromis_polyacanthus
ENSORLG00000000913	si:ch73-63e15.2	100	80.184	ENSAOCG00000016581	si:ch73-63e15.2	95	87.037	Amphiprion_ocellaris
ENSORLG00000000913	si:ch73-63e15.2	100	80.053	ENSAPEG00000008862	si:ch73-63e15.2	100	80.805	Amphiprion_percula
ENSORLG00000000913	si:ch73-63e15.2	91	81.416	ENSATEG00000023838	si:ch73-63e15.2	95	88.854	Anabas_testudineus
ENSORLG00000000913	si:ch73-63e15.2	76	72.174	ENSAPLG00000007158	SBNO2	89	71.750	Anas_platyrhynchos
ENSORLG00000000913	si:ch73-63e15.2	78	66.099	ENSANAG00000026685	SBNO2	89	66.781	Aotus_nancymaae
ENSORLG00000000913	si:ch73-63e15.2	99	78.050	ENSACLG00000005090	si:ch73-63e15.2	100	77.486	Astatotilapia_calliptera
ENSORLG00000000913	si:ch73-63e15.2	79	79.896	ENSAMXG00000018868	sbno2a	96	79.257	Astyanax_mexicanus
ENSORLG00000000913	si:ch73-63e15.2	78	80.899	ENSAMXG00000015881	si:ch73-63e15.2	99	68.176	Astyanax_mexicanus
ENSORLG00000000913	si:ch73-63e15.2	78	67.146	ENSBTAG00000020780	SBNO2	88	67.637	Bos_taurus
ENSORLG00000000913	si:ch73-63e15.2	77	67.876	ENSCAFG00000019543	SBNO2	90	64.206	Canis_familiaris
ENSORLG00000000913	si:ch73-63e15.2	77	67.876	ENSCAFG00020017115	SBNO2	95	64.314	Canis_lupus_dingo
ENSORLG00000000913	si:ch73-63e15.2	77	67.698	ENSCHIG00000026127	SBNO2	85	68.170	Capra_hircus
ENSORLG00000000913	si:ch73-63e15.2	76	66.957	ENSCAPG00000005731	SBNO2	94	66.696	Cavia_aperea
ENSORLG00000000913	si:ch73-63e15.2	77	66.926	ENSCPOG00000007477	SBNO2	86	66.495	Cavia_porcellus
ENSORLG00000000913	si:ch73-63e15.2	78	66.525	ENSCCAG00000037518	SBNO2	89	67.209	Cebus_capucinus
ENSORLG00000000913	si:ch73-63e15.2	78	66.638	ENSCATG00000037046	SBNO2	88	67.296	Cercocebus_atys
ENSORLG00000000913	si:ch73-63e15.2	78	67.869	ENSCLAG00000010178	SBNO2	99	67.962	Chinchilla_lanigera
ENSORLG00000000913	si:ch73-63e15.2	77	67.301	ENSCSAG00000012317	SBNO2	90	64.692	Chlorocebus_sabaeus
ENSORLG00000000913	si:ch73-63e15.2	77	70.306	ENSCPBG00000008920	SBNO2	80	83.945	Chrysemys_picta_bellii
ENSORLG00000000913	si:ch73-63e15.2	74	66.696	ENSCANG00000036745	SBNO2	96	67.053	Colobus_angolensis_palliatus
ENSORLG00000000913	si:ch73-63e15.2	77	65.830	ENSCGRG00001023960	Sbno2	84	66.318	Cricetulus_griseus_chok1gshd
ENSORLG00000000913	si:ch73-63e15.2	77	67.243	ENSCGRG00000011984	Sbno2	85	67.617	Cricetulus_griseus_crigri
ENSORLG00000000913	si:ch73-63e15.2	80	82.215	ENSCSEG00000006856	si:ch73-63e15.2	96	85.182	Cynoglossus_semilaevis
ENSORLG00000000913	si:ch73-63e15.2	100	76.612	ENSCVAG00000005663	si:ch73-63e15.2	100	76.578	Cyprinodon_variegatus
ENSORLG00000000913	si:ch73-63e15.2	99	67.381	ENSDARG00000016188	SBNO2	99	67.742	Danio_rerio
ENSORLG00000000913	si:ch73-63e15.2	81	74.941	ENSDARG00000098801	sbno2a	93	74.306	Danio_rerio
ENSORLG00000000913	si:ch73-63e15.2	77	68.566	ENSDORG00000002916	Sbno2	90	65.817	Dipodomys_ordii
ENSORLG00000000913	si:ch73-63e15.2	78	67.093	ENSEASG00005021621	SBNO2	88	67.808	Equus_asinus_asinus
ENSORLG00000000913	si:ch73-63e15.2	78	67.349	ENSECAG00000011827	SBNO2	88	67.894	Equus_caballus
ENSORLG00000000913	si:ch73-63e15.2	99	72.428	ENSELUG00000020457	si:ch73-63e15.2	99	71.438	Esox_lucius
ENSORLG00000000913	si:ch73-63e15.2	78	70.904	ENSFALG00000013988	SBNO2	92	66.927	Ficedula_albicollis
ENSORLG00000000913	si:ch73-63e15.2	75	66.282	ENSFDAG00000015186	SBNO2	87	65.742	Fukomys_damarensis
ENSORLG00000000913	si:ch73-63e15.2	91	81.979	ENSFHEG00000022262	si:ch73-63e15.2	100	76.804	Fundulus_heteroclitus
ENSORLG00000000913	si:ch73-63e15.2	78	84.502	ENSGMOG00000007542	si:ch73-63e15.2	96	84.502	Gadus_morhua
ENSORLG00000000913	si:ch73-63e15.2	79	70.805	ENSGALG00000037522	SBNO2	93	65.791	Gallus_gallus
ENSORLG00000000913	si:ch73-63e15.2	79	88.596	ENSGAFG00000004860	si:ch73-63e15.2	93	88.596	Gambusia_affinis
ENSORLG00000000913	si:ch73-63e15.2	77	86.938	ENSGACG00000013190	si:ch73-63e15.2	94	87.325	Gasterosteus_aculeatus
ENSORLG00000000913	si:ch73-63e15.2	88	66.542	ENSGAGG00000008348	SBNO2	97	66.392	Gopherus_agassizii
ENSORLG00000000913	si:ch73-63e15.2	99	78.202	ENSHBUG00000010742	si:ch73-63e15.2	100	78.341	Haplochromis_burtoni
ENSORLG00000000913	si:ch73-63e15.2	77	68.076	ENSHGLG00000008739	SBNO2	90	64.331	Heterocephalus_glaber_female
ENSORLG00000000913	si:ch73-63e15.2	78	67.436	ENSHGLG00100005269	SBNO2	99	67.612	Heterocephalus_glaber_male
ENSORLG00000000913	si:ch73-63e15.2	80	84.687	ENSHCOG00000000884	si:ch73-63e15.2	96	78.725	Hippocampus_comes
ENSORLG00000000913	si:ch73-63e15.2	77	81.261	ENSIPUG00000000537	si:ch73-63e15.2	96	72.893	Ictalurus_punctatus
ENSORLG00000000913	si:ch73-63e15.2	77	82.379	ENSIPUG00000019672	sbno2	99	75.071	Ictalurus_punctatus
ENSORLG00000000913	si:ch73-63e15.2	77	67.667	ENSSTOG00000025832	SBNO2	89	64.521	Ictidomys_tridecemlineatus
ENSORLG00000000913	si:ch73-63e15.2	77	65.325	ENSJJAG00000017397	Sbno2	91	62.500	Jaculus_jaculus
ENSORLG00000000913	si:ch73-63e15.2	100	77.947	ENSKMAG00000005541	si:ch73-63e15.2	100	77.456	Kryptolebias_marmoratus
ENSORLG00000000913	si:ch73-63e15.2	100	78.003	ENSLBEG00000025016	si:ch73-63e15.2	95	89.892	Labrus_bergylta
ENSORLG00000000913	si:ch73-63e15.2	80	81.519	ENSLOCG00000004643	si:ch73-63e15.2	83	84.350	Lepisosteus_oculatus
ENSORLG00000000913	si:ch73-63e15.2	76	65.183	ENSLAFG00000008824	SBNO2	89	65.145	Loxodonta_africana
ENSORLG00000000913	si:ch73-63e15.2	78	65.506	ENSMFAG00000040030	SBNO2	90	66.154	Macaca_fascicularis
ENSORLG00000000913	si:ch73-63e15.2	77	67.474	ENSMMUG00000010886	SBNO2	90	64.692	Macaca_mulatta
ENSORLG00000000913	si:ch73-63e15.2	78	66.723	ENSMNEG00000039927	SBNO2	88	67.382	Macaca_nemestrina
ENSORLG00000000913	si:ch73-63e15.2	71	67.917	ENSMLEG00000038556	SBNO2	98	64.751	Mandrillus_leucophaeus
ENSORLG00000000913	si:ch73-63e15.2	91	81.406	ENSMAMG00000018758	si:ch73-63e15.2	100	77.243	Mastacembelus_armatus
ENSORLG00000000913	si:ch73-63e15.2	99	78.391	ENSMZEG00005010682	si:ch73-63e15.2	100	77.472	Maylandia_zebra
ENSORLG00000000913	si:ch73-63e15.2	78	70.946	ENSMGAG00000003801	SBNO2	90	70.798	Meleagris_gallopavo
ENSORLG00000000913	si:ch73-63e15.2	77	66.984	ENSMAUG00000008034	Sbno2	85	67.675	Mesocricetus_auratus
ENSORLG00000000913	si:ch73-63e15.2	78	67.008	ENSMICG00000013071	SBNO2	88	67.551	Microcebus_murinus
ENSORLG00000000913	si:ch73-63e15.2	77	67.589	ENSMOCG00000010504	Sbno2	85	67.817	Microtus_ochrogaster
ENSORLG00000000913	si:ch73-63e15.2	78	69.348	ENSMODG00000005382	SBNO2	88	66.426	Monodelphis_domestica
ENSORLG00000000913	si:ch73-63e15.2	63	83.896	ENSMALG00000021831	si:ch73-63e15.2	96	83.896	Monopterus_albus
ENSORLG00000000913	si:ch73-63e15.2	77	66.926	ENSMUSG00000035673	Sbno2	93	67.530	Mus_musculus
ENSORLG00000000913	si:ch73-63e15.2	77	66.926	MGP_PahariEiJ_G0030976	Sbno2	84	67.742	Mus_pahari
ENSORLG00000000913	si:ch73-63e15.2	77	67.185	MGP_SPRETEiJ_G0016381	Sbno2	90	68.003	Mus_spretus
ENSORLG00000000913	si:ch73-63e15.2	66	70.050	ENSMPUG00000008747	SBNO2	91	70.270	Mustela_putorius_furo
ENSORLG00000000913	si:ch73-63e15.2	77	67.010	ENSNGAG00000004308	Sbno2	86	67.273	Nannospalax_galili
ENSORLG00000000913	si:ch73-63e15.2	78	87.931	ENSNBRG00000022968	si:ch73-63e15.2	99	88.660	Neolamprologus_brichardi
ENSORLG00000000913	si:ch73-63e15.2	74	69.031	ENSNLEG00000001305	SBNO2	89	69.712	Nomascus_leucogenys
ENSORLG00000000913	si:ch73-63e15.2	64	66.947	ENSMEUG00000013511	-	78	66.632	Notamacropus_eugenii
ENSORLG00000000913	si:ch73-63e15.2	77	67.622	ENSOPRG00000017238	SBNO2	93	68.453	Ochotona_princeps
ENSORLG00000000913	si:ch73-63e15.2	77	67.672	ENSODEG00000011822	SBNO2	85	67.509	Octodon_degus
ENSORLG00000000913	si:ch73-63e15.2	99	78.709	ENSONIG00000002490	si:ch73-63e15.2	98	86.869	Oreochromis_niloticus
ENSORLG00000000913	si:ch73-63e15.2	100	99.679	ENSORLG00020010978	si:ch73-63e15.2	100	99.679	Oryzias_latipes_hni
ENSORLG00000000913	si:ch73-63e15.2	100	99.585	ENSORLG00015000202	si:ch73-63e15.2	100	99.585	Oryzias_latipes_hsok
ENSORLG00000000913	si:ch73-63e15.2	100	94.388	ENSOMEG00000000359	si:ch73-63e15.2	100	94.388	Oryzias_melastigma
ENSORLG00000000913	si:ch73-63e15.2	77	65.034	ENSOARG00000011130	SBNO2	86	65.455	Ovis_aries
ENSORLG00000000913	si:ch73-63e15.2	78	65.541	ENSPPAG00000032482	SBNO2	90	66.469	Pan_paniscus
ENSORLG00000000913	si:ch73-63e15.2	78	66.440	ENSPTRG00000010185	SBNO2	88	67.382	Pan_troglodytes
ENSORLG00000000913	si:ch73-63e15.2	78	63.404	ENSPANG00000009658	SBNO2	87	63.870	Papio_anubis
ENSORLG00000000913	si:ch73-63e15.2	90	82.650	ENSPKIG00000024201	si:ch73-63e15.2	83	82.692	Paramormyrops_kingsleyae
ENSORLG00000000913	si:ch73-63e15.2	69	78.042	ENSPKIG00000009707	-	96	70.380	Paramormyrops_kingsleyae
ENSORLG00000000913	si:ch73-63e15.2	65	72.563	ENSPSIG00000002852	SBNO2	99	72.462	Pelodiscus_sinensis
ENSORLG00000000913	si:ch73-63e15.2	80	83.686	ENSPMGG00000014375	si:ch73-63e15.2	92	83.347	Periophthalmus_magnuspinnatus
ENSORLG00000000913	si:ch73-63e15.2	77	67.160	ENSPEMG00000024122	Sbno2	84	67.338	Peromyscus_maniculatus_bairdii
ENSORLG00000000913	si:ch73-63e15.2	77	71.378	ENSPCIG00000011264	SBNO2	88	67.121	Phascolarctos_cinereus
ENSORLG00000000913	si:ch73-63e15.2	99	76.115	ENSPFOG00000004096	si:ch73-63e15.2	99	86.844	Poecilia_formosa
ENSORLG00000000913	si:ch73-63e15.2	100	75.938	ENSPLAG00000014653	si:ch73-63e15.2	100	76.953	Poecilia_latipinna
ENSORLG00000000913	si:ch73-63e15.2	100	76.383	ENSPMEG00000002129	si:ch73-63e15.2	90	90.000	Poecilia_mexicana
ENSORLG00000000913	si:ch73-63e15.2	99	75.887	ENSPREG00000006755	si:ch73-63e15.2	100	75.138	Poecilia_reticulata
ENSORLG00000000913	si:ch73-63e15.2	72	68.377	ENSPCAG00000012256	SBNO2	79	68.169	Procavia_capensis
ENSORLG00000000913	si:ch73-63e15.2	78	61.722	ENSPCOG00000015216	SBNO2	88	61.901	Propithecus_coquereli
ENSORLG00000000913	si:ch73-63e15.2	100	77.873	ENSPNYG00000019926	si:ch73-63e15.2	100	78.327	Pundamilia_nyererei
ENSORLG00000000913	si:ch73-63e15.2	78	80.898	ENSPNAG00000026609	sbno2a	99	68.297	Pygocentrus_nattereri
ENSORLG00000000913	si:ch73-63e15.2	78	82.282	ENSPNAG00000020260	si:ch73-63e15.2	83	81.787	Pygocentrus_nattereri
ENSORLG00000000913	si:ch73-63e15.2	77	67.128	ENSRNOG00000013987	Sbno2	88	67.913	Rattus_norvegicus
ENSORLG00000000913	si:ch73-63e15.2	72	66.083	ENSRBIG00000009740	SBNO2	87	66.884	Rhinopithecus_bieti
ENSORLG00000000913	si:ch73-63e15.2	69	69.039	ENSRROG00000044671	SBNO2	85	69.632	Rhinopithecus_roxellana
ENSORLG00000000913	si:ch73-63e15.2	78	66.099	ENSSBOG00000023562	SBNO2	89	66.781	Saimiri_boliviensis_boliviensis
ENSORLG00000000913	si:ch73-63e15.2	76	70.351	ENSSHAG00000010241	SBNO2	97	70.088	Sarcophilus_harrisii
ENSORLG00000000913	si:ch73-63e15.2	90	81.071	ENSSFOG00015005861	si:ch73-63e15.2	93	81.163	Scleropages_formosus
ENSORLG00000000913	si:ch73-63e15.2	100	77.471	ENSSMAG00000012489	si:ch73-63e15.2	100	77.914	Scophthalmus_maximus
ENSORLG00000000913	si:ch73-63e15.2	100	77.486	ENSSDUG00000003527	si:ch73-63e15.2	100	78.113	Seriola_dumerili
ENSORLG00000000913	si:ch73-63e15.2	100	77.101	ENSSLDG00000004623	si:ch73-63e15.2	100	77.728	Seriola_lalandi_dorsalis
ENSORLG00000000913	si:ch73-63e15.2	91	83.617	ENSSPAG00000017717	si:ch73-63e15.2	100	80.718	Stegastes_partitus
ENSORLG00000000913	si:ch73-63e15.2	78	66.808	ENSSSCG00000030042	SBNO2	89	67.466	Sus_scrofa
ENSORLG00000000913	si:ch73-63e15.2	76	86.148	ENSTRUG00000018193	si:ch73-63e15.2	87	86.148	Takifugu_rubripes
ENSORLG00000000913	si:ch73-63e15.2	70	68.522	ENSUAMG00000006568	SBNO2	93	70.561	Ursus_americanus
ENSORLG00000000913	si:ch73-63e15.2	77	67.761	ENSVVUG00000022823	SBNO2	89	64.127	Vulpes_vulpes
ENSORLG00000000913	si:ch73-63e15.2	72	74.701	ENSXETG00000021579	sbno2	89	75.100	Xenopus_tropicalis
ENSORLG00000000913	si:ch73-63e15.2	89	87.789	ENSXCOG00000009209	si:ch73-63e15.2	94	87.789	Xiphophorus_couchianus
ENSORLG00000000913	si:ch73-63e15.2	100	76.697	ENSXMAG00000012091	si:ch73-63e15.2	91	88.011	Xiphophorus_maculatus