EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000001380 (Gene tree)
Gene ID: 101163985
Gene Symbol: cstf2
Alias: -
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 15676 bases
Position: chr10:10186124-10201799
Accession: 101163985
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000001706	RRM_1	PF00076.22	1.4e-24	1	1
ENSORLP00000001708	RRM_1	PF00076.22	1.5e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000001707	-	6939	XM_004073098	ENSORLP00000001706	494 (aa)	XP_004073146	H2L796
ENSORLT00000001709	-	6999	XM_011479936	ENSORLP00000001708	514 (aa)	XP_011478238	H2L798

Gene Model

Click here to download ENSORLG00000001380's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000001380's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000001380	cstf2	97	58.120	ENSG00000101811	CSTF2	83	90.860	Homo_sapiens
ENSORLG00000001380	cstf2	96	87.212	ENSAPOG00000005630	cstf2	96	87.395	Acanthochromis_polyacanthus
ENSORLG00000001380	cstf2	97	57.119	ENSAMEG00000002082	CSTF2	83	80.498	Ailuropoda_melanoleuca
ENSORLG00000001380	cstf2	96	83.264	ENSACIG00000012852	cstf2	96	83.542	Amphilophus_citrinellus
ENSORLG00000001380	cstf2	100	86.465	ENSAOCG00000020905	cstf2	96	87.395	Amphiprion_ocellaris
ENSORLG00000001380	cstf2	100	86.465	ENSAPEG00000006526	cstf2	96	87.605	Amphiprion_percula
ENSORLG00000001380	cstf2	100	83.534	ENSATEG00000018186	cstf2	96	84.969	Anabas_testudineus
ENSORLG00000001380	cstf2	93	58.179	ENSAPLG00000007255	CSTF2	82	82.353	Anas_platyrhynchos
ENSORLG00000001380	cstf2	97	59.002	ENSANAG00000022342	CSTF2	86	80.498	Aotus_nancymaae
ENSORLG00000001380	cstf2	100	84.818	ENSACLG00000000779	cstf2	93	86.526	Astatotilapia_calliptera
ENSORLG00000001380	cstf2	89	87.013	ENSAMXG00000021477	cstf2	71	98.413	Astyanax_mexicanus
ENSORLG00000001380	cstf2	97	59.380	ENSBTAG00000003547	CSTF2	86	80.498	Bos_taurus
ENSORLG00000001380	cstf2	97	59.722	ENSCJAG00000004422	CSTF2	86	80.498	Callithrix_jacchus
ENSORLG00000001380	cstf2	97	58.291	ENSCAFG00000017551	CSTF2	86	80.000	Canis_familiaris
ENSORLG00000001380	cstf2	97	57.521	ENSCAFG00020007619	CSTF2	83	80.498	Canis_lupus_dingo
ENSORLG00000001380	cstf2	97	59.208	ENSCHIG00000016994	CSTF2	83	80.498	Capra_hircus
ENSORLG00000001380	cstf2	97	57.571	ENSTSYG00000006529	CSTF2	86	80.498	Carlito_syrichta
ENSORLG00000001380	cstf2	97	57.797	ENSCPOG00000015255	CSTF2	84	92.157	Cavia_porcellus
ENSORLG00000001380	cstf2	97	59.002	ENSCCAG00000032975	CSTF2	86	80.498	Cebus_capucinus
ENSORLG00000001380	cstf2	97	59.227	ENSCATG00000022835	CSTF2	86	80.498	Cercocebus_atys
ENSORLG00000001380	cstf2	97	58.020	ENSCLAG00000001904	CSTF2	85	90.385	Chinchilla_lanigera
ENSORLG00000001380	cstf2	97	57.190	ENSCSAG00000010360	CSTF2	83	80.498	Chlorocebus_sabaeus
ENSORLG00000001380	cstf2	97	66.284	ENSCPBG00000014293	CSTF2	93	67.447	Chrysemys_picta_bellii
ENSORLG00000001380	cstf2	97	59.051	ENSCANG00000030612	CSTF2	86	80.498	Colobus_angolensis_palliatus
ENSORLG00000001380	cstf2	96	58.219	ENSCGRG00001023023	Cstf2	86	81.590	Cricetulus_griseus_chok1gshd
ENSORLG00000001380	cstf2	96	86.316	ENSCVAG00000005731	cstf2	96	85.474	Cyprinodon_variegatus
ENSORLG00000001380	cstf2	77	98.182	ENSDARG00000090788	cstf2	94	98.305	Danio_rerio
ENSORLG00000001380	cstf2	97	59.552	ENSDORG00000007195	Cstf2	87	89.937	Dipodomys_ordii
ENSORLG00000001380	cstf2	73	85.455	ENSETEG00000004931	CSTF2	63	83.673	Echinops_telfairi
ENSORLG00000001380	cstf2	97	56.766	ENSEASG00005001216	CSTF2	83	80.000	Equus_asinus_asinus
ENSORLG00000001380	cstf2	97	57.436	ENSECAG00000009325	CSTF2	86	80.000	Equus_caballus
ENSORLG00000001380	cstf2	97	57.949	ENSFCAG00000007000	CSTF2	86	80.498	Felis_catus
ENSORLG00000001380	cstf2	88	56.294	ENSFALG00000003859	CSTF2	83	80.952	Ficedula_albicollis
ENSORLG00000001380	cstf2	97	57.313	ENSFDAG00000002416	CSTF2	86	80.498	Fukomys_damarensis
ENSORLG00000001380	cstf2	96	84.221	ENSFHEG00000017065	cstf2	93	83.366	Fundulus_heteroclitus
ENSORLG00000001380	cstf2	96	73.333	ENSGMOG00000005145	cstf2	99	72.708	Gadus_morhua
ENSORLG00000001380	cstf2	97	59.898	ENSGALG00000006760	CSTF2	86	83.806	Gallus_gallus
ENSORLG00000001380	cstf2	96	83.023	ENSGAFG00000020027	cstf2	96	82.609	Gambusia_affinis
ENSORLG00000001380	cstf2	97	77.344	ENSGACG00000017326	cstf2	98	78.978	Gasterosteus_aculeatus
ENSORLG00000001380	cstf2	97	58.564	ENSGAGG00000006037	CSTF2	87	83.534	Gopherus_agassizii
ENSORLG00000001380	cstf2	97	59.358	ENSGGOG00000022267	CSTF2	86	80.498	Gorilla_gorilla
ENSORLG00000001380	cstf2	100	84.879	ENSHBUG00000016183	cstf2	93	86.583	Haplochromis_burtoni
ENSORLG00000001380	cstf2	97	57.143	ENSHGLG00000000659	-	86	88.889	Heterocephalus_glaber_female
ENSORLG00000001380	cstf2	96	51.394	ENSHGLG00000013455	-	99	50.175	Heterocephalus_glaber_female
ENSORLG00000001380	cstf2	97	57.143	ENSHGLG00100001130	-	86	88.889	Heterocephalus_glaber_male
ENSORLG00000001380	cstf2	96	51.394	ENSHGLG00100015391	-	99	50.175	Heterocephalus_glaber_male
ENSORLG00000001380	cstf2	96	83.300	ENSHCOG00000005157	cstf2	96	83.065	Hippocampus_comes
ENSORLG00000001380	cstf2	98	66.792	ENSIPUG00000017839	cstf2	97	66.475	Ictalurus_punctatus
ENSORLG00000001380	cstf2	97	58.793	ENSSTOG00000023445	CSTF2	85	90.385	Ictidomys_tridecemlineatus
ENSORLG00000001380	cstf2	96	58.247	ENSJJAG00000020507	Cstf2	85	90.385	Jaculus_jaculus
ENSORLG00000001380	cstf2	100	83.903	ENSKMAG00000001068	cstf2	96	86.402	Kryptolebias_marmoratus
ENSORLG00000001380	cstf2	65	93.333	ENSLBEG00000028720	cstf2	89	94.915	Labrus_bergylta
ENSORLG00000001380	cstf2	97	59.699	ENSLACG00000015927	CSTF2	99	58.065	Latimeria_chalumnae
ENSORLG00000001380	cstf2	97	86.667	ENSLOCG00000015300	cstf2	79	91.837	Lepisosteus_oculatus
ENSORLG00000001380	cstf2	97	58.603	ENSLAFG00000000474	CSTF2	86	81.328	Loxodonta_africana
ENSORLG00000001380	cstf2	97	59.051	ENSMFAG00000043888	CSTF2	86	80.498	Macaca_fascicularis
ENSORLG00000001380	cstf2	97	59.051	ENSMMUG00000013008	CSTF2	86	78.879	Macaca_mulatta
ENSORLG00000001380	cstf2	97	59.051	ENSMNEG00000041824	CSTF2	86	80.498	Macaca_nemestrina
ENSORLG00000001380	cstf2	97	59.051	ENSMLEG00000036870	CSTF2	86	80.498	Mandrillus_leucophaeus
ENSORLG00000001380	cstf2	94	86.882	ENSMAMG00000020364	cstf2	96	86.667	Mastacembelus_armatus
ENSORLG00000001380	cstf2	100	84.818	ENSMZEG00005007200	cstf2	96	86.526	Maylandia_zebra
ENSORLG00000001380	cstf2	84	70.000	ENSMGAG00000004139	CSTF2	73	85.714	Meleagris_gallopavo
ENSORLG00000001380	cstf2	96	57.705	ENSMAUG00000000965	Cstf2	86	81.590	Mesocricetus_auratus
ENSORLG00000001380	cstf2	97	58.662	ENSMICG00000014121	CSTF2	86	81.743	Microcebus_murinus
ENSORLG00000001380	cstf2	96	58.048	ENSMOCG00000008081	Cstf2	85	82.128	Microtus_ochrogaster
ENSORLG00000001380	cstf2	96	72.842	ENSMMOG00000000538	cstf2	96	73.181	Mola_mola
ENSORLG00000001380	cstf2	97	60.943	ENSMODG00000011785	CSTF2	99	58.475	Monodelphis_domestica
ENSORLG00000001380	cstf2	96	74.648	MGP_CAROLIEiJ_G0033383	Cstf2	85	90.385	Mus_caroli
ENSORLG00000001380	cstf2	96	57.570	ENSMUSG00000031256	Cstf2	85	90.385	Mus_musculus
ENSORLG00000001380	cstf2	96	74.648	MGP_PahariEiJ_G0031923	Cstf2	86	81.328	Mus_pahari
ENSORLG00000001380	cstf2	96	75.000	MGP_SPRETEiJ_G0034548	Cstf2	85	90.385	Mus_spretus
ENSORLG00000001380	cstf2	97	54.859	ENSMPUG00000002339	CSTF2	80	80.498	Mustela_putorius_furo
ENSORLG00000001380	cstf2	90	81.224	ENSMLUG00000004598	CSTF2	78	80.816	Myotis_lucifugus
ENSORLG00000001380	cstf2	96	59.107	ENSNGAG00000021985	Cstf2	86	80.913	Nannospalax_galili
ENSORLG00000001380	cstf2	93	76.151	ENSNBRG00000021694	cstf2	100	78.288	Neolamprologus_brichardi
ENSORLG00000001380	cstf2	97	59.051	ENSNLEG00000007510	CSTF2	86	80.498	Nomascus_leucogenys
ENSORLG00000001380	cstf2	78	67.290	ENSMEUG00000011186	-	99	61.939	Notamacropus_eugenii
ENSORLG00000001380	cstf2	97	60.140	ENSMEUG00000007875	-	99	61.221	Notamacropus_eugenii
ENSORLG00000001380	cstf2	87	58.812	ENSMEUG00000014025	-	99	59.763	Notamacropus_eugenii
ENSORLG00000001380	cstf2	63	73.333	ENSOPRG00000003106	CSTF2	78	75.758	Ochotona_princeps
ENSORLG00000001380	cstf2	97	57.555	ENSODEG00000002059	CSTF2	86	79.918	Octodon_degus
ENSORLG00000001380	cstf2	91	89.474	ENSONIG00000002631	cstf2	60	89.069	Oreochromis_niloticus
ENSORLG00000001380	cstf2	84	85.714	ENSOANG00000004208	CSTF2	71	85.714	Ornithorhynchus_anatinus
ENSORLG00000001380	cstf2	97	57.363	ENSOCUG00000010468	CSTF2	86	81.328	Oryctolagus_cuniculus
ENSORLG00000001380	cstf2	100	99.416	ENSORLG00020021917	cstf2	100	99.416	Oryzias_latipes_hni
ENSORLG00000001380	cstf2	100	99.416	ENSORLG00015011996	cstf2	100	99.416	Oryzias_latipes_hsok
ENSORLG00000001380	cstf2	100	95.543	ENSOMEG00000015507	cstf2	96	95.573	Oryzias_melastigma
ENSORLG00000001380	cstf2	97	55.063	ENSOGAG00000011192	CSTF2	79	80.417	Otolemur_garnettii
ENSORLG00000001380	cstf2	97	59.208	ENSOARG00000001022	CSTF2	83	80.498	Ovis_aries
ENSORLG00000001380	cstf2	97	59.358	ENSPPAG00000031804	CSTF2	86	80.498	Pan_paniscus
ENSORLG00000001380	cstf2	97	57.949	ENSPPRG00000022492	CSTF2	86	80.498	Panthera_pardus
ENSORLG00000001380	cstf2	97	57.607	ENSPTIG00000009922	CSTF2	86	79.668	Panthera_tigris_altaica
ENSORLG00000001380	cstf2	97	59.358	ENSPTRG00000022090	CSTF2	86	80.498	Pan_troglodytes
ENSORLG00000001380	cstf2	97	59.051	ENSPANG00000002303	CSTF2	86	80.498	Papio_anubis
ENSORLG00000001380	cstf2	98	71.230	ENSPKIG00000005033	cstf2	92	72.561	Paramormyrops_kingsleyae
ENSORLG00000001380	cstf2	96	84.664	ENSPMGG00000006534	cstf2	96	85.714	Periophthalmus_magnuspinnatus
ENSORLG00000001380	cstf2	96	57.483	ENSPEMG00000019415	Cstf2	86	81.590	Peromyscus_maniculatus_bairdii
ENSORLG00000001380	cstf2	78	66.892	ENSPCIG00000002989	CSTF2	83	85.356	Phascolarctos_cinereus
ENSORLG00000001380	cstf2	96	82.927	ENSPLAG00000011176	cstf2	96	81.301	Poecilia_latipinna
ENSORLG00000001380	cstf2	96	82.317	ENSPMEG00000017743	cstf2	96	81.301	Poecilia_mexicana
ENSORLG00000001380	cstf2	65	86.607	ENSPREG00000011481	cstf2	97	77.122	Poecilia_reticulata
ENSORLG00000001380	cstf2	97	57.190	ENSPPYG00000020541	CSTF2	83	80.498	Pongo_abelii
ENSORLG00000001380	cstf2	97	58.627	ENSPCOG00000027744	CSTF2	86	80.498	Propithecus_coquereli
ENSORLG00000001380	cstf2	93	46.831	ENSPVAG00000008342	CSTF2	87	54.825	Pteropus_vampyrus
ENSORLG00000001380	cstf2	100	77.519	ENSPNYG00000010852	cstf2	94	91.781	Pundamilia_nyererei
ENSORLG00000001380	cstf2	96	69.844	ENSPNAG00000018887	cstf2	97	67.669	Pygocentrus_nattereri
ENSORLG00000001380	cstf2	96	58.390	ENSRNOG00000048025	Cstf2	86	81.328	Rattus_norvegicus
ENSORLG00000001380	cstf2	97	59.187	ENSRBIG00000030745	CSTF2	86	80.498	Rhinopithecus_bieti
ENSORLG00000001380	cstf2	97	59.051	ENSRROG00000045042	CSTF2	86	80.498	Rhinopithecus_roxellana
ENSORLG00000001380	cstf2	97	59.002	ENSSBOG00000021649	CSTF2	86	80.498	Saimiri_boliviensis_boliviensis
ENSORLG00000001380	cstf2	86	83.673	ENSSHAG00000003681	CSTF2	76	83.628	Sarcophilus_harrisii
ENSORLG00000001380	cstf2	96	71.735	ENSSFOG00015006348	cstf2	97	69.038	Scleropages_formosus
ENSORLG00000001380	cstf2	100	85.049	ENSSMAG00000013463	cstf2	96	86.345	Scophthalmus_maximus
ENSORLG00000001380	cstf2	97	60.461	ENSSPUG00000005288	-	98	61.034	Sphenodon_punctatus
ENSORLG00000001380	cstf2	97	60.040	ENSSSCG00000012486	CSTF2	86	80.498	Sus_scrofa
ENSORLG00000001380	cstf2	97	58.000	ENSTGUG00000002253	CSTF2	87	83.133	Taeniopygia_guttata
ENSORLG00000001380	cstf2	97	79.487	ENSTNIG00000016860	cstf2	98	79.840	Tetraodon_nigroviridis
ENSORLG00000001380	cstf2	97	58.120	ENSTTRG00000013556	CSTF2	86	80.498	Tursiops_truncatus
ENSORLG00000001380	cstf2	97	57.458	ENSUAMG00000026605	CSTF2	86	80.498	Ursus_americanus
ENSORLG00000001380	cstf2	91	72.028	ENSUMAG00000012417	CSTF2	95	71.530	Ursus_maritimus
ENSORLG00000001380	cstf2	76	69.679	ENSVPAG00000006466	CSTF2	60	67.262	Vicugna_pacos
ENSORLG00000001380	cstf2	97	58.120	ENSVVUG00000004717	CSTF2	86	80.498	Vulpes_vulpes
ENSORLG00000001380	cstf2	89	81.538	ENSXETG00000009642	cstf2	83	87.755	Xenopus_tropicalis
ENSORLG00000001380	cstf2	96	69.318	ENSXCOG00000016436	cstf2	96	68.045	Xiphophorus_couchianus
ENSORLG00000001380	cstf2	65	86.647	ENSXMAG00000013524	cstf2	97	79.104	Xiphophorus_maculatus