EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000001399 (Gene tree)
Gene ID: 101162350
Gene Symbol: ddb1
Alias: -
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 51553 bases
Position: chr3:10101926-10153478
Accession: 101162350
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000037327	CPSF_A	PF03178.15	8.1e-76	1	1
ENSORLP00000040924	CPSF_A	PF03178.15	8.8e-76	1	1
ENSORLP00000001737	CPSF_A	PF03178.15	9.1e-76	1	1
ENSORLP00000034760	CPSF_A	PF03178.15	8.8e-68	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000037199	-	5777	-	ENSORLP00000040924	1087 (aa)	-	-
ENSORLT00000045841	-	5777	-	ENSORLP00000037327	1087 (aa)	-	-
ENSORLT00000001738	-	5894	XM_004066854	ENSORLP00000001737	1126 (aa)	XP_004066902	H2L7C7
ENSORLT00000040593	-	7876	-	ENSORLP00000034760	1064 (aa)	-	-

Gene Model

Click here to download ENSORLG00000001399's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03420	Nucleotide excision repair	KEGG
ola04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000001399's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000001399	ddb1	98	91.066	ENSG00000167986	DDB1	100	94.521	Homo_sapiens
ENSORLG00000001399	ddb1	98	97.791	ENSAPOG00000005036	ddb1	99	97.857	Acanthochromis_polyacanthus
ENSORLG00000001399	ddb1	98	91.162	ENSAMEG00000016518	DDB1	96	89.918	Ailuropoda_melanoleuca
ENSORLG00000001399	ddb1	92	97.959	ENSACIG00000020624	ddb1	99	97.959	Amphilophus_citrinellus
ENSORLG00000001399	ddb1	98	97.502	ENSAOCG00000003066	ddb1	96	96.242	Amphiprion_ocellaris
ENSORLG00000001399	ddb1	98	97.502	ENSAPEG00000000092	ddb1	99	97.672	Amphiprion_percula
ENSORLG00000001399	ddb1	98	97.791	ENSATEG00000020571	ddb1	97	97.953	Anabas_testudineus
ENSORLG00000001399	ddb1	97	89.981	ENSAPLG00000007174	DDB1	93	90.085	Anas_platyrhynchos
ENSORLG00000001399	ddb1	98	90.490	ENSACAG00000017758	DDB1	96	89.276	Anolis_carolinensis
ENSORLG00000001399	ddb1	98	91.066	ENSANAG00000021878	DDB1	96	89.826	Aotus_nancymaae
ENSORLG00000001399	ddb1	98	97.598	ENSACLG00000012401	ddb1	99	97.092	Astatotilapia_calliptera
ENSORLG00000001399	ddb1	98	91.066	ENSBTAG00000021569	DDB1	89	89.826	Bos_taurus
ENSORLG00000001399	ddb1	98	37.418	WBGene00010890	ddb-1	94	37.024	Caenorhabditis_elegans
ENSORLG00000001399	ddb1	98	91.066	ENSCJAG00000019319	DDB1	96	89.826	Callithrix_jacchus
ENSORLG00000001399	ddb1	98	91.162	ENSCAFG00000016264	DDB1	99	91.256	Canis_familiaris
ENSORLG00000001399	ddb1	98	91.162	ENSCAFG00020012722	DDB1	99	91.256	Canis_lupus_dingo
ENSORLG00000001399	ddb1	98	91.066	ENSCHIG00000014969	DDB1	96	89.826	Capra_hircus
ENSORLG00000001399	ddb1	98	90.778	ENSTSYG00000008027	DDB1	96	89.551	Carlito_syrichta
ENSORLG00000001399	ddb1	96	90.882	ENSCAPG00000010786	DDB1	96	89.626	Cavia_aperea
ENSORLG00000001399	ddb1	98	90.874	ENSCPOG00000009956	DDB1	96	89.643	Cavia_porcellus
ENSORLG00000001399	ddb1	98	91.066	ENSCCAG00000035883	DDB1	96	89.826	Cebus_capucinus
ENSORLG00000001399	ddb1	98	88.889	ENSCATG00000044495	DDB1	94	88.992	Cercocebus_atys
ENSORLG00000001399	ddb1	98	91.066	ENSCLAG00000004126	DDB1	96	89.826	Chinchilla_lanigera
ENSORLG00000001399	ddb1	98	91.066	ENSCSAG00000006392	DDB1	96	89.826	Chlorocebus_sabaeus
ENSORLG00000001399	ddb1	87	83.553	ENSCHOG00000011377	DDB1	88	81.621	Choloepus_hoffmanni
ENSORLG00000001399	ddb1	98	90.778	ENSCPBG00000017728	DDB1	96	89.551	Chrysemys_picta_bellii
ENSORLG00000001399	ddb1	98	61.823	ENSCING00000007437	-	96	60.653	Ciona_intestinalis
ENSORLG00000001399	ddb1	91	60.953	ENSCSAVG00000004783	-	100	60.166	Ciona_savignyi
ENSORLG00000001399	ddb1	98	91.066	ENSCANG00000019948	DDB1	96	89.826	Colobus_angolensis_palliatus
ENSORLG00000001399	ddb1	98	91.162	ENSCGRG00001016599	Ddb1	98	90.112	Cricetulus_griseus_chok1gshd
ENSORLG00000001399	ddb1	98	91.162	ENSCGRG00000013427	Ddb1	96	89.918	Cricetulus_griseus_crigri
ENSORLG00000001399	ddb1	98	96.926	ENSCSEG00000012499	ddb1	99	95.344	Cynoglossus_semilaevis
ENSORLG00000001399	ddb1	98	97.406	ENSCVAG00000019531	ddb1	99	97.486	Cyprinodon_variegatus
ENSORLG00000001399	ddb1	98	91.747	ENSDARG00000074431	ddb1	94	92.071	Danio_rerio
ENSORLG00000001399	ddb1	98	91.162	ENSDNOG00000014884	DDB1	97	91.256	Dasypus_novemcinctus
ENSORLG00000001399	ddb1	83	93.636	ENSDORG00000000127	Ddb1	95	93.636	Dipodomys_ordii
ENSORLG00000001399	ddb1	98	61.472	FBgn0260962	pic	94	61.132	Drosophila_melanogaster
ENSORLG00000001399	ddb1	67	93.701	ENSETEG00000001053	-	64	93.701	Echinops_telfairi
ENSORLG00000001399	ddb1	84	83.802	ENSEBUG00000014593	ddb1	97	83.802	Eptatretus_burgeri
ENSORLG00000001399	ddb1	98	91.162	ENSEASG00005008184	DDB1	96	89.918	Equus_asinus_asinus
ENSORLG00000001399	ddb1	98	91.258	ENSECAG00000012136	DDB1	96	90.009	Equus_caballus
ENSORLG00000001399	ddb1	89	87.215	ENSEEUG00000003194	DDB1	85	87.205	Erinaceus_europaeus
ENSORLG00000001399	ddb1	99	95.175	ENSELUG00000023868	ddb1	94	96.000	Esox_lucius
ENSORLG00000001399	ddb1	98	91.162	ENSFCAG00000029716	DDB1	96	89.918	Felis_catus
ENSORLG00000001399	ddb1	98	90.778	ENSFALG00000011981	DDB1	96	89.093	Ficedula_albicollis
ENSORLG00000001399	ddb1	98	91.066	ENSFDAG00000005128	DDB1	96	89.826	Fukomys_damarensis
ENSORLG00000001399	ddb1	88	97.436	ENSFHEG00000022133	ddb1	95	95.613	Fundulus_heteroclitus
ENSORLG00000001399	ddb1	83	97.659	ENSGMOG00000019386	ddb1	94	97.659	Gadus_morhua
ENSORLG00000001399	ddb1	98	90.970	ENSGALG00000042333	DDB1	96	89.734	Gallus_gallus
ENSORLG00000001399	ddb1	98	97.695	ENSGAFG00000013142	ddb1	99	97.495	Gambusia_affinis
ENSORLG00000001399	ddb1	98	97.214	ENSGACG00000017182	ddb1	99	95.704	Gasterosteus_aculeatus
ENSORLG00000001399	ddb1	93	90.457	ENSGAGG00000014124	DDB1	95	89.179	Gopherus_agassizii
ENSORLG00000001399	ddb1	98	91.066	ENSGGOG00000004052	DDB1	96	89.826	Gorilla_gorilla
ENSORLG00000001399	ddb1	98	97.598	ENSHBUG00000008873	ddb1	96	96.334	Haplochromis_burtoni
ENSORLG00000001399	ddb1	98	91.066	ENSHGLG00000018430	DDB1	96	89.826	Heterocephalus_glaber_female
ENSORLG00000001399	ddb1	98	90.010	ENSHGLG00100014475	DDB1	96	88.818	Heterocephalus_glaber_male
ENSORLG00000001399	ddb1	98	97.022	ENSHCOG00000018670	ddb1	98	97.207	Hippocampus_comes
ENSORLG00000001399	ddb1	99	94.229	ENSIPUG00000005612	DDB1	98	95.438	Ictalurus_punctatus
ENSORLG00000001399	ddb1	98	91.066	ENSSTOG00000007552	DDB1	96	89.826	Ictidomys_tridecemlineatus
ENSORLG00000001399	ddb1	98	91.066	ENSJJAG00000017769	Ddb1	95	90.064	Jaculus_jaculus
ENSORLG00000001399	ddb1	98	97.598	ENSKMAG00000002315	ddb1	99	97.672	Kryptolebias_marmoratus
ENSORLG00000001399	ddb1	90	97.711	ENSLBEG00000017065	ddb1	99	97.711	Labrus_bergylta
ENSORLG00000001399	ddb1	98	90.970	ENSLACG00000017611	DDB1	97	90.368	Latimeria_chalumnae
ENSORLG00000001399	ddb1	90	85.578	ENSLOCG00000000012	ddb1	93	87.150	Lepisosteus_oculatus
ENSORLG00000001399	ddb1	98	90.970	ENSLAFG00000011513	DDB1	96	89.734	Loxodonta_africana
ENSORLG00000001399	ddb1	98	91.066	ENSMFAG00000042035	DDB1	96	89.826	Macaca_fascicularis
ENSORLG00000001399	ddb1	98	91.066	ENSMMUG00000002691	DDB1	100	94.286	Macaca_mulatta
ENSORLG00000001399	ddb1	98	91.066	ENSMNEG00000031559	DDB1	96	89.826	Macaca_nemestrina
ENSORLG00000001399	ddb1	98	91.066	ENSMLEG00000044136	DDB1	98	89.532	Mandrillus_leucophaeus
ENSORLG00000001399	ddb1	98	98.079	ENSMAMG00000014372	ddb1	96	96.792	Mastacembelus_armatus
ENSORLG00000001399	ddb1	98	97.598	ENSMZEG00005013835	ddb1	96	96.242	Maylandia_zebra
ENSORLG00000001399	ddb1	91	90.638	ENSMGAG00000004990	DDB1	94	90.387	Meleagris_gallopavo
ENSORLG00000001399	ddb1	98	91.162	ENSMAUG00000012926	Ddb1	96	89.918	Mesocricetus_auratus
ENSORLG00000001399	ddb1	98	91.258	ENSMICG00000013703	DDB1	96	90.009	Microcebus_murinus
ENSORLG00000001399	ddb1	98	91.066	ENSMOCG00000020499	Ddb1	96	89.826	Microtus_ochrogaster
ENSORLG00000001399	ddb1	92	97.857	ENSMMOG00000001758	ddb1	99	97.857	Mola_mola
ENSORLG00000001399	ddb1	98	82.759	ENSMODG00000020353	DDB1	93	83.101	Monodelphis_domestica
ENSORLG00000001399	ddb1	98	97.695	ENSMALG00000014071	ddb1	96	96.425	Monopterus_albus
ENSORLG00000001399	ddb1	98	91.162	MGP_CAROLIEiJ_G0022695	Ddb1	96	89.918	Mus_caroli
ENSORLG00000001399	ddb1	98	91.258	ENSMUSG00000024740	Ddb1	96	90.009	Mus_musculus
ENSORLG00000001399	ddb1	98	91.162	MGP_PahariEiJ_G0014189	Ddb1	96	89.918	Mus_pahari
ENSORLG00000001399	ddb1	98	91.258	MGP_SPRETEiJ_G0023609	Ddb1	96	90.009	Mus_spretus
ENSORLG00000001399	ddb1	98	87.896	ENSMPUG00000014200	DDB1	96	86.801	Mustela_putorius_furo
ENSORLG00000001399	ddb1	98	91.258	ENSMLUG00000013232	DDB1	96	90.009	Myotis_lucifugus
ENSORLG00000001399	ddb1	98	91.258	ENSNGAG00000009384	Ddb1	96	90.009	Nannospalax_galili
ENSORLG00000001399	ddb1	98	97.695	ENSNBRG00000019581	ddb1	96	96.425	Neolamprologus_brichardi
ENSORLG00000001399	ddb1	98	88.414	ENSNLEG00000002022	DDB1	94	88.529	Nomascus_leucogenys
ENSORLG00000001399	ddb1	87	97.297	ENSMEUG00000001099	DDB1	84	97.297	Notamacropus_eugenii
ENSORLG00000001399	ddb1	90	81.059	ENSOPRG00000008254	DDB1	86	81.059	Ochotona_princeps
ENSORLG00000001399	ddb1	98	90.970	ENSODEG00000002419	DDB1	96	89.734	Octodon_degus
ENSORLG00000001399	ddb1	98	97.695	ENSONIG00000005804	ddb1	96	96.425	Oreochromis_niloticus
ENSORLG00000001399	ddb1	90	89.420	ENSOANG00000004897	DDB1	95	89.522	Ornithorhynchus_anatinus
ENSORLG00000001399	ddb1	98	91.162	ENSOCUG00000001667	DDB1	96	89.918	Oryctolagus_cuniculus
ENSORLG00000001399	ddb1	99	99.644	ENSORLG00020001277	ddb1	99	99.644	Oryzias_latipes_hni
ENSORLG00000001399	ddb1	98	99.808	ENSORLG00015002080	ddb1	99	99.815	Oryzias_latipes_hsok
ENSORLG00000001399	ddb1	98	99.135	ENSOMEG00000006181	ddb1	98	98.891	Oryzias_melastigma
ENSORLG00000001399	ddb1	98	91.258	ENSOGAG00000016103	DDB1	96	90.009	Otolemur_garnettii
ENSORLG00000001399	ddb1	98	91.066	ENSOARG00000011716	DDB1	95	89.826	Ovis_aries
ENSORLG00000001399	ddb1	98	91.066	ENSPPAG00000035343	DDB1	96	89.826	Pan_paniscus
ENSORLG00000001399	ddb1	98	91.162	ENSPPRG00000013300	DDB1	96	89.918	Panthera_pardus
ENSORLG00000001399	ddb1	96	91.176	ENSPTIG00000006909	DDB1	94	89.907	Panthera_tigris_altaica
ENSORLG00000001399	ddb1	98	91.066	ENSPTRG00000003737	DDB1	96	89.826	Pan_troglodytes
ENSORLG00000001399	ddb1	98	91.066	ENSPANG00000000242	DDB1	96	89.826	Papio_anubis
ENSORLG00000001399	ddb1	99	94.607	ENSPKIG00000019213	ddb1	94	95.810	Paramormyrops_kingsleyae
ENSORLG00000001399	ddb1	96	90.049	ENSPSIG00000013275	DDB1	96	88.837	Pelodiscus_sinensis
ENSORLG00000001399	ddb1	92	97.857	ENSPMGG00000021179	ddb1	99	97.857	Periophthalmus_magnuspinnatus
ENSORLG00000001399	ddb1	98	91.162	ENSPEMG00000012241	Ddb1	96	89.918	Peromyscus_maniculatus_bairdii
ENSORLG00000001399	ddb1	96	86.444	ENSPMAG00000008479	ddb1	100	86.444	Petromyzon_marinus
ENSORLG00000001399	ddb1	98	91.547	ENSPCIG00000002643	DDB1	96	90.284	Phascolarctos_cinereus
ENSORLG00000001399	ddb1	98	97.887	ENSPFOG00000002768	ddb1	94	97.946	Poecilia_formosa
ENSORLG00000001399	ddb1	98	97.887	ENSPLAG00000017227	ddb1	98	97.864	Poecilia_latipinna
ENSORLG00000001399	ddb1	98	97.887	ENSPMEG00000011398	ddb1	98	97.864	Poecilia_mexicana
ENSORLG00000001399	ddb1	98	97.887	ENSPREG00000004440	ddb1	98	97.953	Poecilia_reticulata
ENSORLG00000001399	ddb1	98	87.057	ENSPPYG00000003193	DDB1	95	85.740	Pongo_abelii
ENSORLG00000001399	ddb1	84	87.440	ENSPCAG00000011040	DDB1	80	87.440	Procavia_capensis
ENSORLG00000001399	ddb1	98	90.604	ENSPCOG00000015176	DDB1	96	89.661	Propithecus_coquereli
ENSORLG00000001399	ddb1	98	90.970	ENSPVAG00000003847	DDB1	96	89.734	Pteropus_vampyrus
ENSORLG00000001399	ddb1	99	94.891	ENSPNAG00000006635	ddb1	97	96.089	Pygocentrus_nattereri
ENSORLG00000001399	ddb1	98	91.258	ENSRNOG00000020715	Ddb1	96	90.009	Rattus_norvegicus
ENSORLG00000001399	ddb1	98	91.066	ENSRBIG00000033611	DDB1	96	89.826	Rhinopithecus_bieti
ENSORLG00000001399	ddb1	98	91.066	ENSRROG00000041407	DDB1	96	89.826	Rhinopithecus_roxellana
ENSORLG00000001399	ddb1	98	91.162	ENSSBOG00000019775	DDB1	96	89.918	Saimiri_boliviensis_boliviensis
ENSORLG00000001399	ddb1	91	89.083	ENSSHAG00000011600	DDB1	95	87.855	Sarcophilus_harrisii
ENSORLG00000001399	ddb1	98	95.581	ENSSFOG00015011151	ddb1	97	95.814	Scleropages_formosus
ENSORLG00000001399	ddb1	98	97.406	ENSSMAG00000009495	ddb1	96	96.150	Scophthalmus_maximus
ENSORLG00000001399	ddb1	98	97.983	ENSSDUG00000004642	ddb1	96	96.700	Seriola_dumerili
ENSORLG00000001399	ddb1	98	97.983	ENSSLDG00000015804	ddb1	96	96.700	Seriola_lalandi_dorsalis
ENSORLG00000001399	ddb1	71	94.340	ENSSARG00000003290	-	71	94.340	Sorex_araneus
ENSORLG00000001399	ddb1	98	90.490	ENSSPUG00000019338	DDB1	96	89.276	Sphenodon_punctatus
ENSORLG00000001399	ddb1	98	97.791	ENSSPAG00000009888	ddb1	99	97.953	Stegastes_partitus
ENSORLG00000001399	ddb1	98	90.586	ENSSSCG00000013094	DDB1	94	90.645	Sus_scrofa
ENSORLG00000001399	ddb1	98	90.970	ENSTGUG00000006414	DDB1	96	89.184	Taeniopygia_guttata
ENSORLG00000001399	ddb1	98	96.638	ENSTRUG00000016682	ddb1	99	96.927	Takifugu_rubripes
ENSORLG00000001399	ddb1	87	89.927	ENSTNIG00000009565	ddb1	95	89.927	Tetraodon_nigroviridis
ENSORLG00000001399	ddb1	91	85.307	ENSTTRG00000011055	DDB1	88	85.307	Tursiops_truncatus
ENSORLG00000001399	ddb1	98	91.162	ENSUAMG00000017793	DDB1	93	91.256	Ursus_americanus
ENSORLG00000001399	ddb1	98	91.162	ENSUMAG00000011788	DDB1	98	91.256	Ursus_maritimus
ENSORLG00000001399	ddb1	87	86.132	ENSVPAG00000007963	DDB1	87	86.132	Vicugna_pacos
ENSORLG00000001399	ddb1	98	91.162	ENSVVUG00000004987	DDB1	96	89.918	Vulpes_vulpes
ENSORLG00000001399	ddb1	98	88.612	ENSXETG00000008820	ddb1	96	87.489	Xenopus_tropicalis
ENSORLG00000001399	ddb1	92	97.755	ENSXCOG00000013956	ddb1	99	97.755	Xiphophorus_couchianus
ENSORLG00000001399	ddb1	98	97.695	ENSXMAG00000000022	ddb1	99	97.495	Xiphophorus_maculatus