EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSORLG00000002691 (Gene tree)
Gene ID
101163762
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Oryzias_latipes
Status
putative
Strand
Plus strand
Length
5934 bases
Position
chr16:5906818-5912751
Accession
101163762
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSORLP00000031804PABPPF00658.187.5e-3211
ENSORLP00000003355PABPPF00658.187.3e-2411
ENSORLP00000003355RRM_5PF13893.63.4e-0812
ENSORLP00000003355RRM_5PF13893.63.4e-0822
ENSORLP00000031804RRM_5PF13893.66.5e-0811
ENSORLP00000031804RRM_1PF00076.228.1e-9314
ENSORLP00000031804RRM_1PF00076.228.1e-9324
ENSORLP00000031804RRM_1PF00076.228.1e-9334
ENSORLP00000031804RRM_1PF00076.228.1e-9344
ENSORLP00000003355RRM_1PF00076.222e-8614
ENSORLP00000003355RRM_1PF00076.222e-8624
ENSORLP00000003355RRM_1PF00076.222e-8634
ENSORLP00000003355RRM_1PF00076.222e-8644
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSORLT00000040201-3828XM_011484882ENSORLP00000031804635 (aa)XP_011483184UPI0000E9C93B
ENSORLT00000003356-1545-ENSORLP00000003355514 (aa)-H2LBS6
Gene Model
Click here to download ENSORLG00000002691's gene model file
Pathways
Pathway IDPathway NameSource
ola03013RNA transportKEGG
ola03015mRNA surveillance pathwayKEGG
ola03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000002691's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSORLG00000002691pabpc1a5837.349ENSORLG00000008913celf46737.349
ENSORLG00000002691pabpc1a6539.759ENSORLG00000004600celf5a7636.842
ENSORLG00000002691pabpc1a6937.349ENSORLG00000004217ELAVL29832.593
ENSORLG00000002691pabpc1a5536.986ENSORLG00000010447celf3b5836.986
ENSORLG00000002691pabpc1a6530.075ENSORLG00000010428trnau1apa6230.075
ENSORLG00000002691pabpc1a5836.986ENSORLG00000002630celf3a6136.986
ENSORLG00000002691pabpc1a9884.259ENSORLG00000017479pabpc49784.259
ENSORLG00000002691pabpc1a7032.632ENSORLG00000002306-5432.632
ENSORLG00000002691pabpc1a9579.365ENSORLG00000010322pabpc1l9974.194
ENSORLG00000002691pabpc1a5838.554ENSORLG00000013392si:dkey-205h23.25638.554
ENSORLG00000002691pabpc1a6836.145ENSORLG00000028487elavl48136.145
ENSORLG00000002691pabpc1a6730.000ENSORLG00000003917rbms1a5430.000
ENSORLG00000002691pabpc1a9689.189ENSORLG00000003008-9988.599
ENSORLG00000002691pabpc1a6837.349ENSORLG00000005379elavl39037.349
ENSORLG00000002691pabpc1a6836.000ENSORLG00000008077rbm196336.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSORLG00000002691pabpc1a6878.889ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSORLG00000002691pabpc1a6878.889ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSORLG00000002691pabpc1a10099.048ENSAPOG00000015105pabpc1a9999.048Acanthochromis_polyacanthus
ENSORLG00000002691pabpc1a10093.587ENSAPOG00000017776pabpc1b9993.587Acanthochromis_polyacanthus
ENSORLG00000002691pabpc1a6878.889ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSORLG00000002691pabpc1a10098.810ENSACIG00000004685pabpc1a9998.810Amphilophus_citrinellus
ENSORLG00000002691pabpc1a10093.243ENSACIG00000018366pabpc1b10084.555Amphilophus_citrinellus
ENSORLG00000002691pabpc1a10097.480ENSAOCG00000011656pabpc1a9999.048Amphiprion_ocellaris
ENSORLG00000002691pabpc1a10093.112ENSAOCG00000019839pabpc1b9993.112Amphiprion_ocellaris
ENSORLG00000002691pabpc1a10093.112ENSAPEG00000010435pabpc1b9993.112Amphiprion_percula
ENSORLG00000002691pabpc1a10097.480ENSAPEG00000006963pabpc1a9999.048Amphiprion_percula
ENSORLG00000002691pabpc1a10097.008ENSATEG00000024852pabpc1a9998.571Anabas_testudineus
ENSORLG00000002691pabpc1a10093.333ENSATEG00000012917pabpc1b9993.333Anabas_testudineus
ENSORLG00000002691pabpc1a6878.889ENSANAG00000019431-9880.102Aotus_nancymaae
ENSORLG00000002691pabpc1a6878.889ENSANAG00000019429-9880.102Aotus_nancymaae
ENSORLG00000002691pabpc1a10092.162ENSACLG00000014335pabpc1b9992.162Astatotilapia_calliptera
ENSORLG00000002691pabpc1a10098.571ENSACLG00000009399pabpc1a10099.010Astatotilapia_calliptera
ENSORLG00000002691pabpc1a9694.048ENSAMXG00000008599pabpc1b9994.048Astyanax_mexicanus
ENSORLG00000002691pabpc1a6878.889ENSBTAG00000052491-9778.889Bos_taurus
ENSORLG00000002691pabpc1a6878.889ENSBTAG00000050902-9879.024Bos_taurus
ENSORLG00000002691pabpc1a6878.889ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSORLG00000002691pabpc1a6878.889ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSORLG00000002691pabpc1a6878.889ENSCHIG00000011138-9880.102Capra_hircus
ENSORLG00000002691pabpc1a6878.889ENSCHIG00000006283-9880.102Capra_hircus
ENSORLG00000002691pabpc1a6878.889ENSTSYG00000001775-9880.102Carlito_syrichta
ENSORLG00000002691pabpc1a6878.889ENSCPOG00000009525-9880.102Cavia_porcellus
ENSORLG00000002691pabpc1a6878.889ENSCCAG00000031524-9880.102Cebus_capucinus
ENSORLG00000002691pabpc1a6878.889ENSCATG00000042826-9880.102Cercocebus_atys
ENSORLG00000002691pabpc1a6878.889ENSCATG00000043125-9880.102Cercocebus_atys
ENSORLG00000002691pabpc1a6876.667ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSORLG00000002691pabpc1a6876.667ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSORLG00000002691pabpc1a6878.889ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSORLG00000002691pabpc1a6879.641ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSORLG00000002691pabpc1a9694.595ENSCSEG00000015241-10087.774Cynoglossus_semilaevis
ENSORLG00000002691pabpc1a9998.333ENSCSEG00000013324pabpc1a9998.333Cynoglossus_semilaevis
ENSORLG00000002691pabpc1a10087.324ENSCVAG00000005489pabpc1b9991.211Cyprinodon_variegatus
ENSORLG00000002691pabpc1a10096.535ENSCVAG00000021872pabpc1a9998.571Cyprinodon_variegatus
ENSORLG00000002691pabpc1a9693.243ENSDARG00000021140pabpc1b9992.619Danio_rerio
ENSORLG00000002691pabpc1a9695.476ENSDARG00000017219pabpc1a9995.476Danio_rerio
ENSORLG00000002691pabpc1a6879.191ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSORLG00000002691pabpc1a6876.111ENSDORG00000011362-9877.551Dipodomys_ordii
ENSORLG00000002691pabpc1a6878.889ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSORLG00000002691pabpc1a6878.889ENSECAG00000002620-9878.641Equus_caballus
ENSORLG00000002691pabpc1a6875.000ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSORLG00000002691pabpc1a9697.222ENSELUG00000003614pabpc1a10093.553Esox_lucius
ENSORLG00000002691pabpc1a10093.381ENSELUG00000015062-9993.381Esox_lucius
ENSORLG00000002691pabpc1a6858.937ENSELUG00000005389-9758.621Esox_lucius
ENSORLG00000002691pabpc1a6878.889ENSFCAG00000039701-9880.102Felis_catus
ENSORLG00000002691pabpc1a6878.889ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSORLG00000002691pabpc1a9694.595ENSFHEG00000008186pabpc1b9992.874Fundulus_heteroclitus
ENSORLG00000002691pabpc1a10096.693ENSFHEG00000018979pabpc1a9998.571Fundulus_heteroclitus
ENSORLG00000002691pabpc1a10098.333ENSGMOG00000013448pabpc1a9998.333Gadus_morhua
ENSORLG00000002691pabpc1a9993.717ENSGMOG00000002448-8693.717Gadus_morhua
ENSORLG00000002691pabpc1a9693.587ENSGAFG00000010193pabpc1b9993.587Gambusia_affinis
ENSORLG00000002691pabpc1a10096.378ENSGAFG00000019750pabpc1a9998.571Gambusia_affinis
ENSORLG00000002691pabpc1a9692.399ENSGACG00000003771pabpc1b9992.399Gasterosteus_aculeatus
ENSORLG00000002691pabpc1a10096.220ENSGACG00000003572pabpc1a10096.220Gasterosteus_aculeatus
ENSORLG00000002691pabpc1a6878.889ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSORLG00000002691pabpc1a6878.889ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSORLG00000002691pabpc1a10098.571ENSHBUG00000020487pabpc1a10099.010Haplochromis_burtoni
ENSORLG00000002691pabpc1a10092.180ENSHBUG00000002075pabpc1b9992.162Haplochromis_burtoni
ENSORLG00000002691pabpc1a6877.778ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSORLG00000002691pabpc1a6877.778ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSORLG00000002691pabpc1a6877.778ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSORLG00000002691pabpc1a9487.500ENSHCOG00000003175pabpc1b9981.053Hippocampus_comes
ENSORLG00000002691pabpc1a10098.333ENSHCOG00000013502pabpc1a9998.333Hippocampus_comes
ENSORLG00000002691pabpc1a10083.987ENSIPUG00000010791-10083.830Ictalurus_punctatus
ENSORLG00000002691pabpc1a8155.224ENSIPUG00000018724-8555.224Ictalurus_punctatus
ENSORLG00000002691pabpc1a8356.941ENSIPUG00000021244-6554.470Ictalurus_punctatus
ENSORLG00000002691pabpc1a10095.476ENSIPUG00000008848pabpc1a9995.476Ictalurus_punctatus
ENSORLG00000002691pabpc1a6878.333ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSORLG00000002691pabpc1a6878.333ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSORLG00000002691pabpc1a6877.222ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSORLG00000002691pabpc1a10099.286ENSKMAG00000000605pabpc1a9999.286Kryptolebias_marmoratus
ENSORLG00000002691pabpc1a10087.736ENSKMAG00000008049pabpc1b9993.112Kryptolebias_marmoratus
ENSORLG00000002691pabpc1a10096.220ENSLBEG00000024002-10096.220Labrus_bergylta
ENSORLG00000002691pabpc1a9692.874ENSLBEG00000026845pabpc1b9992.874Labrus_bergylta
ENSORLG00000002691pabpc1a6877.778ENSLAFG00000023096-9878.974Loxodonta_africana
ENSORLG00000002691pabpc1a6878.453ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSORLG00000002691pabpc1a6878.889ENSMMUG00000037681-9880.102Macaca_mulatta
ENSORLG00000002691pabpc1a6878.889ENSMMUG00000039929-9880.102Macaca_mulatta
ENSORLG00000002691pabpc1a6878.889ENSMMUG00000009740-9880.102Macaca_mulatta
ENSORLG00000002691pabpc1a6878.889ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSORLG00000002691pabpc1a6878.889ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSORLG00000002691pabpc1a9694.595ENSMAMG00000014610pabpc1b9993.587Mastacembelus_armatus
ENSORLG00000002691pabpc1a10096.850ENSMAMG00000004502-9998.571Mastacembelus_armatus
ENSORLG00000002691pabpc1a10092.162ENSMZEG00005026745pabpc1b9992.162Maylandia_zebra
ENSORLG00000002691pabpc1a10098.571ENSMZEG00005025416pabpc1a10099.010Maylandia_zebra
ENSORLG00000002691pabpc1a6878.889ENSMICG00000047642-9880.102Microcebus_murinus
ENSORLG00000002691pabpc1a10094.844ENSMMOG00000018044pabpc1a10094.844Mola_mola
ENSORLG00000002691pabpc1a10083.673ENSMMOG00000018009pabpc1b10083.359Mola_mola
ENSORLG00000002691pabpc1a9973.747ENSMODG00000015024-9973.747Monodelphis_domestica
ENSORLG00000002691pabpc1a9487.302ENSMODG00000013156-9879.236Monodelphis_domestica
ENSORLG00000002691pabpc1a10084.458ENSMALG00000006066pabpc1b10084.458Monopterus_albus
ENSORLG00000002691pabpc1a10096.850ENSMALG00000013020-9999.048Monopterus_albus
ENSORLG00000002691pabpc1a6880.838ENSNGAG00000012688-9878.571Nannospalax_galili
ENSORLG00000002691pabpc1a10092.399ENSNBRG00000013737pabpc1b9992.399Neolamprologus_brichardi
ENSORLG00000002691pabpc1a10098.571ENSNBRG00000003068-10099.010Neolamprologus_brichardi
ENSORLG00000002691pabpc1a6878.889ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSORLG00000002691pabpc1a6878.333ENSODEG00000018540-9879.592Octodon_degus
ENSORLG00000002691pabpc1a10098.333ENSONIG00000006871-9998.333Oreochromis_niloticus
ENSORLG00000002691pabpc1a9694.595ENSONIG00000002717pabpc1b9991.924Oreochromis_niloticus
ENSORLG00000002691pabpc1a6878.889ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSORLG00000002691pabpc1a9689.189ENSORLG00020022259-9988.361Oryzias_latipes_hni
ENSORLG00000002691pabpc1a100100.000ENSORLG00020022398pabpc1a10099.843Oryzias_latipes_hni
ENSORLG00000002691pabpc1a100100.000ENSORLG00015013633pabpc1100100.000Oryzias_latipes_hsok
ENSORLG00000002691pabpc1a10084.144ENSORLG00015010932-10083.673Oryzias_latipes_hsok
ENSORLG00000002691pabpc1a10079.159ENSOMEG00000013627pabpc1b10086.139Oryzias_melastigma
ENSORLG00000002691pabpc1a10099.762ENSOMEG00000020219pabpc1a10099.055Oryzias_melastigma
ENSORLG00000002691pabpc1a6878.889ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSORLG00000002691pabpc1a6878.889ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSORLG00000002691pabpc1a6878.889ENSOARG00000005943-9880.102Ovis_aries
ENSORLG00000002691pabpc1a6878.889ENSPPAG00000012920-9880.102Pan_paniscus
ENSORLG00000002691pabpc1a6878.889ENSPPRG00000011804-9880.102Panthera_pardus
ENSORLG00000002691pabpc1a6878.889ENSPPRG00000011809-9880.102Panthera_pardus
ENSORLG00000002691pabpc1a6878.889ENSPTRG00000028252-9880.102Pan_troglodytes
ENSORLG00000002691pabpc1a6878.889ENSPANG00000011549-9880.102Papio_anubis
ENSORLG00000002691pabpc1a10093.333ENSPKIG00000005676pabpc1b9993.333Paramormyrops_kingsleyae
ENSORLG00000002691pabpc1a8292.162ENSPMGG00000023134-9792.377Periophthalmus_magnuspinnatus
ENSORLG00000002691pabpc1a8296.934ENSPMGG00000022487pabpc1a9892.887Periophthalmus_magnuspinnatus
ENSORLG00000002691pabpc1a9579.452ENSPCIG00000016995-5571.451Phascolarctos_cinereus
ENSORLG00000002691pabpc1a9693.349ENSPFOG00000005917pabpc1b9993.349Poecilia_formosa
ENSORLG00000002691pabpc1a96100.000ENSPFOG00000010815pabpc1a10095.054Poecilia_formosa
ENSORLG00000002691pabpc1a9693.587ENSPLAG00000001388pabpc1b9993.587Poecilia_latipinna
ENSORLG00000002691pabpc1a10097.008ENSPLAG00000004114pabpc1a9998.571Poecilia_latipinna
ENSORLG00000002691pabpc1a10097.008ENSPMEG00000001334pabpc1a9998.571Poecilia_mexicana
ENSORLG00000002691pabpc1a9693.349ENSPMEG00000014399pabpc1b9993.349Poecilia_mexicana
ENSORLG00000002691pabpc1a9693.587ENSPREG00000010911pabpc1b9993.587Poecilia_reticulata
ENSORLG00000002691pabpc1a10096.047ENSPREG00000019595pabpc1a100100.000Poecilia_reticulata
ENSORLG00000002691pabpc1a6878.889ENSPPYG00000020468-9880.102Pongo_abelii
ENSORLG00000002691pabpc1a6878.889ENSPCAG00000005308-9880.102Procavia_capensis
ENSORLG00000002691pabpc1a6878.333ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSORLG00000002691pabpc1a6879.330ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSORLG00000002691pabpc1a10092.180ENSPNYG00000012578pabpc1b9992.162Pundamilia_nyererei
ENSORLG00000002691pabpc1a10098.571ENSPNYG00000005192pabpc1a9998.571Pundamilia_nyererei
ENSORLG00000002691pabpc1a9694.048ENSPNAG00000024626pabpc1b9994.048Pygocentrus_nattereri
ENSORLG00000002691pabpc1a10095.238ENSPNAG00000028408pabpc1a9995.238Pygocentrus_nattereri
ENSORLG00000002691pabpc1a10079.623ENSRBIG00000028738-9489.810Rhinopithecus_bieti
ENSORLG00000002691pabpc1a6878.889ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSORLG00000002691pabpc1a6878.889ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSORLG00000002691pabpc1a9772.967ENSSHAG00000000511-10072.967Sarcophilus_harrisii
ENSORLG00000002691pabpc1a8277.070ENSSFOG00015019668-8878.613Scleropages_formosus
ENSORLG00000002691pabpc1a10094.048ENSSFOG00015002752-9994.048Scleropages_formosus
ENSORLG00000002691pabpc1a10094.286ENSSFOG00015006662pabpc1a9994.286Scleropages_formosus
ENSORLG00000002691pabpc1a10098.571ENSSMAG00000010803pabpc1a9998.571Scophthalmus_maximus
ENSORLG00000002691pabpc1a10092.637ENSSMAG00000006869pabpc1b9992.637Scophthalmus_maximus
ENSORLG00000002691pabpc1a10096.850ENSSDUG00000006675pabpc1a9998.810Seriola_dumerili
ENSORLG00000002691pabpc1a9694.595ENSSDUG00000011965pabpc1b9993.824Seriola_dumerili
ENSORLG00000002691pabpc1a9694.595ENSSLDG00000014156pabpc1b9992.723Seriola_lalandi_dorsalis
ENSORLG00000002691pabpc1a10096.850ENSSLDG00000011661pabpc1a9998.810Seriola_lalandi_dorsalis
ENSORLG00000002691pabpc1a9693.587ENSSPAG00000019265pabpc1b9993.587Stegastes_partitus
ENSORLG00000002691pabpc1a10099.048ENSSPAG00000014453-9999.048Stegastes_partitus
ENSORLG00000002691pabpc1a6878.889ENSSSCG00000032167-9880.102Sus_scrofa
ENSORLG00000002691pabpc1a6878.889ENSSSCG00000036336-9880.102Sus_scrofa
ENSORLG00000002691pabpc1a9698.571ENSTRUG00000011577-10094.654Takifugu_rubripes
ENSORLG00000002691pabpc1a10092.162ENSTRUG00000003767-9992.162Takifugu_rubripes
ENSORLG00000002691pabpc1a9498.771ENSTNIG00000013307pabpc1a10091.628Tetraodon_nigroviridis
ENSORLG00000002691pabpc1a9691.924ENSTNIG00000009153pabpc1b10085.670Tetraodon_nigroviridis
ENSORLG00000002691pabpc1a6878.889ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSORLG00000002691pabpc1a6878.889ENSUAMG00000008089-9880.102Ursus_americanus
ENSORLG00000002691pabpc1a9463.488ENSUMAG00000023926-8969.890Ursus_maritimus
ENSORLG00000002691pabpc1a6878.889ENSUMAG00000003364-9880.102Ursus_maritimus
ENSORLG00000002691pabpc1a6878.333ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSORLG00000002691pabpc1a9750.000ENSXETG00000015439-9750.000Xenopus_tropicalis
ENSORLG00000002691pabpc1a10085.243ENSXCOG00000019901pabpc1b10085.243Xiphophorus_couchianus
ENSORLG00000002691pabpc1a10091.339ENSXCOG00000017066pabpc1a10091.339Xiphophorus_couchianus
ENSORLG00000002691pabpc1a10096.850ENSXMAG00000002555pabpc1a10096.850Xiphophorus_maculatus
ENSORLG00000002691pabpc1a9693.587ENSXMAG00000003753pabpc1b9993.587Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us