EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000002839 (Gene tree)
Gene ID: 101164338
Gene Symbol: pop1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 12631 bases
Position: chr16:6447608-6460238
Accession: 101164338
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000036393	POP1	PF06978.11	3.5e-38	1	2
ENSORLP00000036393	POP1	PF06978.11	3.5e-38	2	2
ENSORLP00000003546	POP1	PF06978.11	3.7e-38	1	2
ENSORLP00000003546	POP1	PF06978.11	3.7e-38	2	2
ENSORLP00000036393	POPLD	PF08170.12	4.2e-29	1	1
ENSORLP00000003546	POPLD	PF08170.12	4.5e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000003547	-	6403	-	ENSORLP00000003546	945 (aa)	-	H2LCB0
ENSORLT00000037826	-	6683	XM_011484892	ENSORLP00000036393	953 (aa)	XP_011483194	UPI0005CC012B

Gene Model

Click here to download ENSORLG00000002839's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03008	Ribosome biogenesis in eukaryotes	KEGG
ola03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000002839's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000002839	pop1	100	47.172	ENSG00000104356	POP1	100	47.172	Homo_sapiens
ENSORLG00000002839	pop1	100	74.138	ENSAPOG00000008198	pop1	100	74.138	Acanthochromis_polyacanthus
ENSORLG00000002839	pop1	100	47.587	ENSAMEG00000000556	POP1	92	49.842	Ailuropoda_melanoleuca
ENSORLG00000002839	pop1	100	68.615	ENSACIG00000004169	POP1	100	68.103	Amphilophus_citrinellus
ENSORLG00000002839	pop1	100	74.037	ENSAOCG00000010991	pop1	100	74.037	Amphiprion_ocellaris
ENSORLG00000002839	pop1	100	68.283	ENSAPEG00000007607	pop1	100	68.283	Amphiprion_percula
ENSORLG00000002839	pop1	100	73.374	ENSATEG00000024814	POP1	100	72.653	Anabas_testudineus
ENSORLG00000002839	pop1	95	50.158	ENSAPLG00000014418	POP1	99	50.158	Anas_platyrhynchos
ENSORLG00000002839	pop1	99	47.674	ENSACAG00000016083	POP1	100	47.710	Anolis_carolinensis
ENSORLG00000002839	pop1	86	54.062	ENSANAG00000026360	POP1	91	61.628	Aotus_nancymaae
ENSORLG00000002839	pop1	100	71.053	ENSACLG00000010951	pop1	100	71.385	Astatotilapia_calliptera
ENSORLG00000002839	pop1	100	56.194	ENSAMXG00000014483	POP1	100	55.348	Astyanax_mexicanus
ENSORLG00000002839	pop1	100	47.646	ENSBTAG00000012596	POP1	92	49.738	Bos_taurus
ENSORLG00000002839	pop1	63	32.184	WBGene00015486	C05D11.9	67	31.801	Caenorhabditis_elegans
ENSORLG00000002839	pop1	100	47.864	ENSCJAG00000015567	POP1	100	47.864	Callithrix_jacchus
ENSORLG00000002839	pop1	100	48.608	ENSCAFG00000000469	POP1	92	50.542	Canis_familiaris
ENSORLG00000002839	pop1	100	47.481	ENSCAFG00020026765	POP1	92	49.262	Canis_lupus_dingo
ENSORLG00000002839	pop1	100	47.363	ENSCHIG00000017066	POP1	99	47.712	Capra_hircus
ENSORLG00000002839	pop1	100	46.395	ENSTSYG00000003097	POP1	100	46.750	Carlito_syrichta
ENSORLG00000002839	pop1	100	46.917	ENSCAPG00000007251	POP1	100	46.473	Cavia_aperea
ENSORLG00000002839	pop1	100	48.213	ENSCPOG00000002901	POP1	100	47.771	Cavia_porcellus
ENSORLG00000002839	pop1	100	48.393	ENSCCAG00000018939	POP1	100	48.293	Cebus_capucinus
ENSORLG00000002839	pop1	100	47.459	ENSCATG00000040916	POP1	100	47.172	Cercocebus_atys
ENSORLG00000002839	pop1	100	47.527	ENSCLAG00000007208	POP1	89	49.525	Chinchilla_lanigera
ENSORLG00000002839	pop1	93	49.840	ENSCSAG00000012340	POP1	99	49.947	Chlorocebus_sabaeus
ENSORLG00000002839	pop1	95	46.800	ENSCHOG00000011432	POP1	96	46.708	Choloepus_hoffmanni
ENSORLG00000002839	pop1	100	48.970	ENSCPBG00000006373	POP1	100	48.924	Chrysemys_picta_bellii
ENSORLG00000002839	pop1	100	47.510	ENSCANG00000001647	POP1	100	46.845	Colobus_angolensis_palliatus
ENSORLG00000002839	pop1	100	46.289	ENSCGRG00001017308	Pop1	92	48.514	Cricetulus_griseus_chok1gshd
ENSORLG00000002839	pop1	100	43.936	ENSCGRG00000010824	Pop1	100	43.744	Cricetulus_griseus_crigri
ENSORLG00000002839	pop1	100	70.204	ENSCSEG00000008737	POP1	100	70.010	Cynoglossus_semilaevis
ENSORLG00000002839	pop1	100	71.178	ENSCVAG00000022248	pop1	100	70.769	Cyprinodon_variegatus
ENSORLG00000002839	pop1	53	53.400	ENSDARG00000102087	pop1	99	51.772	Danio_rerio
ENSORLG00000002839	pop1	100	44.361	ENSDNOG00000019974	POP1	92	46.469	Dasypus_novemcinctus
ENSORLG00000002839	pop1	100	42.693	ENSDORG00000015384	Pop1	90	44.468	Dipodomys_ordii
ENSORLG00000002839	pop1	88	45.783	ENSETEG00000007839	POP1	88	45.611	Echinops_telfairi
ENSORLG00000002839	pop1	52	45.129	ENSEBUG00000009897	pop1	96	44.356	Eptatretus_burgeri
ENSORLG00000002839	pop1	100	47.541	ENSEASG00005003189	POP1	98	47.445	Equus_asinus_asinus
ENSORLG00000002839	pop1	100	47.541	ENSECAG00000024236	POP1	100	47.445	Equus_caballus
ENSORLG00000002839	pop1	51	72.368	ENSEEUG00000003050	-	53	76.923	Erinaceus_europaeus
ENSORLG00000002839	pop1	100	61.168	ENSELUG00000003526	pop1	100	61.139	Esox_lucius
ENSORLG00000002839	pop1	100	46.692	ENSFCAG00000002168	POP1	92	48.702	Felis_catus
ENSORLG00000002839	pop1	100	47.559	ENSFALG00000005711	POP1	100	47.363	Ficedula_albicollis
ENSORLG00000002839	pop1	100	47.358	ENSFDAG00000017068	POP1	92	49.269	Fukomys_damarensis
ENSORLG00000002839	pop1	100	70.868	ENSFHEG00000019518	pop1	100	70.842	Fundulus_heteroclitus
ENSORLG00000002839	pop1	100	62.680	ENSGMOG00000000659	POP1	100	62.641	Gadus_morhua
ENSORLG00000002839	pop1	100	70.298	ENSGAFG00000019770	POP1	100	69.619	Gambusia_affinis
ENSORLG00000002839	pop1	100	64.169	ENSGACG00000003499	pop1	100	63.785	Gasterosteus_aculeatus
ENSORLG00000002839	pop1	100	48.387	ENSGAGG00000011737	POP1	98	48.438	Gopherus_agassizii
ENSORLG00000002839	pop1	100	46.929	ENSGGOG00000003176	POP1	100	47.409	Gorilla_gorilla
ENSORLG00000002839	pop1	100	71.486	ENSHBUG00000021583	pop1	100	71.486	Haplochromis_burtoni
ENSORLG00000002839	pop1	100	47.217	ENSHGLG00000006029	POP1	92	49.218	Heterocephalus_glaber_female
ENSORLG00000002839	pop1	100	47.217	ENSHGLG00100016879	POP1	92	49.218	Heterocephalus_glaber_male
ENSORLG00000002839	pop1	100	64.128	ENSHCOG00000013888	pop1	100	63.527	Hippocampus_comes
ENSORLG00000002839	pop1	99	56.574	ENSIPUG00000018336	pop1	100	55.853	Ictalurus_punctatus
ENSORLG00000002839	pop1	100	46.679	ENSSTOG00000011455	POP1	89	48.431	Ictidomys_tridecemlineatus
ENSORLG00000002839	pop1	95	47.961	ENSJJAG00000013325	Pop1	91	47.854	Jaculus_jaculus
ENSORLG00000002839	pop1	100	73.320	ENSKMAG00000001346	POP1	100	73.320	Kryptolebias_marmoratus
ENSORLG00000002839	pop1	100	64.823	ENSLBEG00000024457	POP1	100	64.596	Labrus_bergylta
ENSORLG00000002839	pop1	94	51.499	ENSLACG00000012498	POP1	98	51.852	Latimeria_chalumnae
ENSORLG00000002839	pop1	100	54.644	ENSLOCG00000009817	POP1	100	54.823	Lepisosteus_oculatus
ENSORLG00000002839	pop1	95	50.632	ENSLAFG00000010770	POP1	91	50.421	Loxodonta_africana
ENSORLG00000002839	pop1	100	47.797	ENSMFAG00000000347	POP1	100	47.368	Macaca_fascicularis
ENSORLG00000002839	pop1	100	47.053	ENSMNEG00000036870	POP1	100	46.654	Macaca_nemestrina
ENSORLG00000002839	pop1	100	47.935	ENSMLEG00000034986	POP1	100	47.172	Mandrillus_leucophaeus
ENSORLG00000002839	pop1	100	73.104	ENSMAMG00000004040	pop1	100	72.599	Mastacembelus_armatus
ENSORLG00000002839	pop1	100	71.284	ENSMZEG00005025448	pop1	100	71.284	Maylandia_zebra
ENSORLG00000002839	pop1	100	46.724	ENSMGAG00000012167	POP1	100	47.479	Meleagris_gallopavo
ENSORLG00000002839	pop1	100	46.881	ENSMAUG00000017537	Pop1	92	48.677	Mesocricetus_auratus
ENSORLG00000002839	pop1	100	46.845	ENSMICG00000004361	POP1	92	48.654	Microcebus_murinus
ENSORLG00000002839	pop1	100	46.401	ENSMOCG00000006356	Pop1	92	48.677	Microtus_ochrogaster
ENSORLG00000002839	pop1	100	65.971	ENSMMOG00000018242	pop1	100	65.866	Mola_mola
ENSORLG00000002839	pop1	100	46.476	ENSMODG00000006561	POP1	100	46.242	Monodelphis_domestica
ENSORLG00000002839	pop1	100	70.517	ENSMALG00000012621	POP1	100	70.719	Monopterus_albus
ENSORLG00000002839	pop1	100	46.006	MGP_CAROLIEiJ_G0019726	Pop1	92	47.594	Mus_caroli
ENSORLG00000002839	pop1	100	45.865	ENSMUSG00000022325	Pop1	92	47.385	Mus_musculus
ENSORLG00000002839	pop1	100	45.192	MGP_PahariEiJ_G0019735	Pop1	92	47.529	Mus_pahari
ENSORLG00000002839	pop1	100	45.629	MGP_SPRETEiJ_G0020622	Pop1	92	47.286	Mus_spretus
ENSORLG00000002839	pop1	100	47.348	ENSMPUG00000015250	POP1	100	47.155	Mustela_putorius_furo
ENSORLG00000002839	pop1	100	44.638	ENSMLUG00000010204	POP1	100	44.971	Myotis_lucifugus
ENSORLG00000002839	pop1	100	46.525	ENSNGAG00000001582	Pop1	100	46.332	Nannospalax_galili
ENSORLG00000002839	pop1	100	66.906	ENSNBRG00000002356	pop1	100	66.804	Neolamprologus_brichardi
ENSORLG00000002839	pop1	100	47.788	ENSNLEG00000002541	POP1	100	47.358	Nomascus_leucogenys
ENSORLG00000002839	pop1	89	54.830	ENSMEUG00000003118	POP1	90	54.830	Notamacropus_eugenii
ENSORLG00000002839	pop1	100	47.190	ENSOPRG00000007667	POP1	92	48.529	Ochotona_princeps
ENSORLG00000002839	pop1	100	46.367	ENSODEG00000003984	POP1	92	49.057	Octodon_degus
ENSORLG00000002839	pop1	100	72.194	ENSONIG00000016445	pop1	100	72.194	Oreochromis_niloticus
ENSORLG00000002839	pop1	61	47.047	ENSOANG00000001278	-	94	47.047	Ornithorhynchus_anatinus
ENSORLG00000002839	pop1	100	46.558	ENSOCUG00000017400	POP1	92	48.750	Oryctolagus_cuniculus
ENSORLG00000002839	pop1	100	86.762	ENSORLG00020022450	POP1	100	86.253	Oryzias_latipes_hni
ENSORLG00000002839	pop1	100	97.170	ENSORLG00015012746	POP1	100	97.170	Oryzias_latipes_hsok
ENSORLG00000002839	pop1	100	86.444	ENSOMEG00000006915	pop1	99	86.548	Oryzias_melastigma
ENSORLG00000002839	pop1	100	47.262	ENSOGAG00000001466	POP1	100	46.788	Otolemur_garnettii
ENSORLG00000002839	pop1	100	47.267	ENSPPAG00000018410	POP1	100	47.363	Pan_paniscus
ENSORLG00000002839	pop1	100	46.648	ENSPPRG00000005002	POP1	92	48.491	Panthera_pardus
ENSORLG00000002839	pop1	100	46.514	ENSPTIG00000016527	POP1	92	48.444	Panthera_tigris_altaica
ENSORLG00000002839	pop1	100	47.459	ENSPTRG00000020458	POP1	100	47.459	Pan_troglodytes
ENSORLG00000002839	pop1	100	48.031	ENSPANG00000009704	POP1	100	47.601	Papio_anubis
ENSORLG00000002839	pop1	100	59.263	ENSPKIG00000016325	POP1	100	59.169	Paramormyrops_kingsleyae
ENSORLG00000002839	pop1	100	47.578	ENSPSIG00000012343	POP1	100	47.531	Pelodiscus_sinensis
ENSORLG00000002839	pop1	100	62.741	ENSPMGG00000022253	POP1	100	62.335	Periophthalmus_magnuspinnatus
ENSORLG00000002839	pop1	99	45.750	ENSPEMG00000023633	Pop1	92	47.407	Peromyscus_maniculatus_bairdii
ENSORLG00000002839	pop1	93	44.235	ENSPMAG00000003209	POP1	100	44.293	Petromyzon_marinus
ENSORLG00000002839	pop1	100	46.794	ENSPCIG00000012216	POP1	93	48.354	Phascolarctos_cinereus
ENSORLG00000002839	pop1	100	70.679	ENSPFOG00000012490	POP1	100	70.062	Poecilia_formosa
ENSORLG00000002839	pop1	100	70.443	ENSPLAG00000004646	POP1	100	69.825	Poecilia_latipinna
ENSORLG00000002839	pop1	100	70.576	ENSPMEG00000019592	POP1	100	69.959	Poecilia_mexicana
ENSORLG00000002839	pop1	100	71.253	ENSPREG00000020951	POP1	100	70.842	Poecilia_reticulata
ENSORLG00000002839	pop1	100	47.368	ENSPPYG00000018777	POP1	100	47.076	Pongo_abelii
ENSORLG00000002839	pop1	100	45.149	ENSPCAG00000016662	POP1	92	46.973	Procavia_capensis
ENSORLG00000002839	pop1	100	46.558	ENSPCOG00000019420	POP1	92	48.491	Propithecus_coquereli
ENSORLG00000002839	pop1	100	46.377	ENSPVAG00000014468	POP1	92	48.214	Pteropus_vampyrus
ENSORLG00000002839	pop1	100	67.662	ENSPNYG00000004476	pop1	100	67.868	Pundamilia_nyererei
ENSORLG00000002839	pop1	100	55.731	ENSPNAG00000000265	pop1	100	55.588	Pygocentrus_nattereri
ENSORLG00000002839	pop1	100	45.977	ENSRNOG00000005243	Pop1	92	47.794	Rattus_norvegicus
ENSORLG00000002839	pop1	100	47.839	ENSRBIG00000007996	POP1	100	47.172	Rhinopithecus_bieti
ENSORLG00000002839	pop1	100	47.839	ENSRROG00000012334	POP1	100	47.172	Rhinopithecus_roxellana
ENSORLG00000002839	pop1	95	49.583	ENSSBOG00000020830	POP1	93	49.478	Saimiri_boliviensis_boliviensis
ENSORLG00000002839	pop1	100	46.872	ENSSHAG00000000296	POP1	100	46.583	Sarcophilus_harrisii
ENSORLG00000002839	pop1	100	58.884	ENSSFOG00015007429	pop1	99	58.539	Scleropages_formosus
ENSORLG00000002839	pop1	100	70.332	ENSSMAG00000010467	POP1	100	70.466	Scophthalmus_maximus
ENSORLG00000002839	pop1	100	72.205	ENSSDUG00000007817	POP1	100	72.407	Seriola_dumerili
ENSORLG00000002839	pop1	100	72.709	ENSSLDG00000012565	POP1	100	72.910	Seriola_lalandi_dorsalis
ENSORLG00000002839	pop1	100	45.930	ENSSPUG00000003550	-	100	46.311	Sphenodon_punctatus
ENSORLG00000002839	pop1	100	71.692	ENSSPAG00000014955	pop1	100	70.859	Stegastes_partitus
ENSORLG00000002839	pop1	100	47.915	ENSSSCG00000006078	POP1	92	49.631	Sus_scrofa
ENSORLG00000002839	pop1	95	46.273	ENSTGUG00000012011	-	100	46.273	Taeniopygia_guttata
ENSORLG00000002839	pop1	100	68.079	ENSTRUG00000010856	pop1	100	67.839	Takifugu_rubripes
ENSORLG00000002839	pop1	95	68.191	ENSTNIG00000013297	pop1	98	68.471	Tetraodon_nigroviridis
ENSORLG00000002839	pop1	99	45.030	ENSTBEG00000014214	POP1	96	46.002	Tupaia_belangeri
ENSORLG00000002839	pop1	100	46.487	ENSTTRG00000016071	POP1	92	48.485	Tursiops_truncatus
ENSORLG00000002839	pop1	99	49.096	ENSUAMG00000017309	POP1	96	49.581	Ursus_americanus
ENSORLG00000002839	pop1	100	47.257	ENSUMAG00000016952	POP1	91	63.095	Ursus_maritimus
ENSORLG00000002839	pop1	86	51.685	ENSVPAG00000008278	POP1	74	61.538	Vicugna_pacos
ENSORLG00000002839	pop1	100	47.287	ENSVVUG00000010994	POP1	92	49.156	Vulpes_vulpes
ENSORLG00000002839	pop1	100	61.044	ENSXCOG00000017043	POP1	100	60.674	Xiphophorus_couchianus
ENSORLG00000002839	pop1	100	69.650	ENSXMAG00000002472	POP1	100	69.650	Xiphophorus_maculatus