EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000002958 (Gene tree)
Gene ID: 101160723
Gene Symbol: rad54l
Alias: -
Full Name: RAD54 like
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 13641 bases
Position: chr4:5540436-5554076
Accession: 101160723
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000029824	ResIII	PF04851.15	5e-08	1	1
ENSORLP00000029824	DEAD	PF00270.29	6.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000003701	-	1461	-	ENSORLP00000003700	486 (aa)	-	H2LCR0
ENSORLT00000045737	-	3421	XM_004067651	ENSORLP00000029824	733 (aa)	XP_004067699	UPI0002A49CB9

Gene Model

Click here to download ENSORLG00000002958's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000002958's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000002958	rad54l	68	31.746	ENSORLG00000003673	chd1l	50	31.746
ENSORLG00000002958	rad54l	89	43.678	ENSORLG00000008918	rad54b	98	45.511
ENSORLG00000002958	rad54l	77	37.198	ENSORLG00000000987	hells	62	37.198
ENSORLG00000002958	rad54l	71	30.345	ENSORLG00000004287	ercc6l2	53	30.517
ENSORLG00000002958	rad54l	71	30.263	ENSORLG00000024240	ercc6l	74	30.451

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000002958	rad54l	99	78.389	ENSG00000085999	RAD54L	100	84.000	Homo_sapiens
ENSORLG00000002958	rad54l	99	84.511	ENSAPOG00000011643	rad54l	99	84.103	Acanthochromis_polyacanthus
ENSORLG00000002958	rad54l	99	77.285	ENSAMEG00000013902	RAD54L	99	76.478	Ailuropoda_melanoleuca
ENSORLG00000002958	rad54l	99	83.989	ENSACIG00000001939	rad54l	99	83.853	Amphilophus_citrinellus
ENSORLG00000002958	rad54l	99	87.500	ENSAOCG00000017576	rad54l	99	87.092	Amphiprion_ocellaris
ENSORLG00000002958	rad54l	96	87.870	ENSAPEG00000020658	rad54l	95	89.504	Amphiprion_percula
ENSORLG00000002958	rad54l	95	88.445	ENSATEG00000006767	rad54l	98	89.275	Anabas_testudineus
ENSORLG00000002958	rad54l	94	82.251	ENSAPLG00000006389	RAD54L	98	82.413	Anas_platyrhynchos
ENSORLG00000002958	rad54l	99	80.054	ENSACAG00000002312	RAD54L	99	79.919	Anolis_carolinensis
ENSORLG00000002958	rad54l	99	78.658	ENSANAG00000035439	RAD54L	99	78.255	Aotus_nancymaae
ENSORLG00000002958	rad54l	100	82.297	ENSACLG00000018711	rad54l	100	82.544	Astatotilapia_calliptera
ENSORLG00000002958	rad54l	100	84.906	ENSAMXG00000012777	rad54l	100	84.771	Astyanax_mexicanus
ENSORLG00000002958	rad54l	99	78.552	ENSBTAG00000019901	RAD54L	99	78.150	Bos_taurus
ENSORLG00000002958	rad54l	96	56.606	WBGene00004298	rad-54	83	58.419	Caenorhabditis_elegans
ENSORLG00000002958	rad54l	99	76.573	ENSCJAG00000021080	RAD54L	95	76.573	Callithrix_jacchus
ENSORLG00000002958	rad54l	99	77.315	ENSCAFG00000004272	RAD54L	99	76.510	Canis_familiaris
ENSORLG00000002958	rad54l	99	77.285	ENSCAFG00020015066	RAD54L	99	76.478	Canis_lupus_dingo
ENSORLG00000002958	rad54l	99	78.389	ENSCHIG00000020118	RAD54L	99	78.121	Capra_hircus
ENSORLG00000002958	rad54l	99	77.614	ENSTSYG00000002032	RAD54L	99	76.676	Carlito_syrichta
ENSORLG00000002958	rad54l	99	78.523	ENSCPOG00000006768	RAD54L	99	77.450	Cavia_porcellus
ENSORLG00000002958	rad54l	99	78.658	ENSCCAG00000025783	RAD54L	99	78.389	Cebus_capucinus
ENSORLG00000002958	rad54l	99	78.926	ENSCATG00000030589	RAD54L	99	78.523	Cercocebus_atys
ENSORLG00000002958	rad54l	99	79.060	ENSCLAG00000004645	RAD54L	99	78.121	Chinchilla_lanigera
ENSORLG00000002958	rad54l	99	78.792	ENSCSAG00000001229	RAD54L	99	78.389	Chlorocebus_sabaeus
ENSORLG00000002958	rad54l	99	80.054	ENSCPBG00000005675	RAD54L	99	79.650	Chrysemys_picta_bellii
ENSORLG00000002958	rad54l	99	62.533	ENSCING00000024456	-	99	62.205	Ciona_intestinalis
ENSORLG00000002958	rad54l	99	62.598	ENSCSAVG00000010859	-	88	67.208	Ciona_savignyi
ENSORLG00000002958	rad54l	99	78.792	ENSCANG00000034891	RAD54L	99	78.389	Colobus_angolensis_palliatus
ENSORLG00000002958	rad54l	99	78.437	ENSCGRG00001014807	Rad54l	99	78.167	Cricetulus_griseus_chok1gshd
ENSORLG00000002958	rad54l	99	78.437	ENSCGRG00000016038	Rad54l	99	78.167	Cricetulus_griseus_crigri
ENSORLG00000002958	rad54l	99	84.993	ENSCSEG00000001983	rad54l	99	84.720	Cynoglossus_semilaevis
ENSORLG00000002958	rad54l	88	87.649	ENSCVAG00000019561	rad54l	100	87.649	Cyprinodon_variegatus
ENSORLG00000002958	rad54l	100	82.927	ENSDARG00000018623	rad54l	100	82.520	Danio_rerio
ENSORLG00000002958	rad54l	99	77.748	ENSDNOG00000003395	RAD54L	99	76.944	Dasypus_novemcinctus
ENSORLG00000002958	rad54l	99	72.090	ENSDORG00000002632	Rad54l	99	72.400	Dipodomys_ordii
ENSORLG00000002958	rad54l	99	54.267	FBgn0002989	okr	87	56.828	Drosophila_melanogaster
ENSORLG00000002958	rad54l	77	75.109	ENSETEG00000000550	RAD54L	78	77.049	Echinops_telfairi
ENSORLG00000002958	rad54l	99	77.868	ENSEASG00005004511	RAD54L	96	81.315	Equus_asinus_asinus
ENSORLG00000002958	rad54l	99	77.718	ENSECAG00000008760	RAD54L	99	77.869	Equus_caballus
ENSORLG00000002958	rad54l	99	75.973	ENSEEUG00000008113	RAD54L	99	75.973	Erinaceus_europaeus
ENSORLG00000002958	rad54l	100	85.141	ENSELUG00000002295	rad54l	100	84.605	Esox_lucius
ENSORLG00000002958	rad54l	99	76.510	ENSFCAG00000003444	RAD54L	99	75.973	Felis_catus
ENSORLG00000002958	rad54l	99	79.380	ENSFALG00000009480	RAD54L	99	78.976	Ficedula_albicollis
ENSORLG00000002958	rad54l	99	78.121	ENSFDAG00000007806	RAD54L	99	77.987	Fukomys_damarensis
ENSORLG00000002958	rad54l	61	83.669	ENSFHEG00000009824	rad54l	76	83.937	Fundulus_heteroclitus
ENSORLG00000002958	rad54l	99	82.947	ENSGMOG00000014568	rad54l	99	82.947	Gadus_morhua
ENSORLG00000002958	rad54l	99	80.297	ENSGALG00000010356	RAD54L	92	79.892	Gallus_gallus
ENSORLG00000002958	rad54l	91	82.912	ENSGAFG00000011110	rad54l	100	82.912	Gambusia_affinis
ENSORLG00000002958	rad54l	100	85.560	ENSGACG00000003111	rad54l	98	85.155	Gasterosteus_aculeatus
ENSORLG00000002958	rad54l	99	79.217	ENSGAGG00000014089	RAD54L	96	78.812	Gopherus_agassizii
ENSORLG00000002958	rad54l	99	78.523	ENSGGOG00000010602	RAD54L	99	78.121	Gorilla_gorilla
ENSORLG00000002958	rad54l	100	82.568	ENSHBUG00000007793	rad54l	100	82.432	Haplochromis_burtoni
ENSORLG00000002958	rad54l	99	78.792	ENSHGLG00000000753	RAD54L	99	78.389	Heterocephalus_glaber_female
ENSORLG00000002958	rad54l	99	78.658	ENSHGLG00100016987	RAD54L	99	78.389	Heterocephalus_glaber_male
ENSORLG00000002958	rad54l	100	82.369	ENSIPUG00000015999	rad54l	99	85.942	Ictalurus_punctatus
ENSORLG00000002958	rad54l	99	77.718	ENSSTOG00000029125	RAD54L	99	77.181	Ictidomys_tridecemlineatus
ENSORLG00000002958	rad54l	99	65.457	ENSJJAG00000000235	-	99	64.516	Jaculus_jaculus
ENSORLG00000002958	rad54l	99	84.783	ENSKMAG00000009944	rad54l	99	84.511	Kryptolebias_marmoratus
ENSORLG00000002958	rad54l	99	86.296	ENSLBEG00000014617	rad54l	97	89.583	Labrus_bergylta
ENSORLG00000002958	rad54l	99	83.266	ENSLOCG00000004144	rad54l	100	83.358	Lepisosteus_oculatus
ENSORLG00000002958	rad54l	99	77.823	ENSLAFG00000007583	RAD54L	99	77.419	Loxodonta_africana
ENSORLG00000002958	rad54l	99	78.926	ENSMFAG00000031241	RAD54L	99	78.523	Macaca_fascicularis
ENSORLG00000002958	rad54l	99	78.926	ENSMMUG00000011568	RAD54L	99	78.523	Macaca_mulatta
ENSORLG00000002958	rad54l	99	78.792	ENSMNEG00000038562	RAD54L	99	78.389	Macaca_nemestrina
ENSORLG00000002958	rad54l	99	78.926	ENSMLEG00000038145	RAD54L	99	78.523	Mandrillus_leucophaeus
ENSORLG00000002958	rad54l	99	84.688	ENSMAMG00000022180	rad54l	99	88.018	Mastacembelus_armatus
ENSORLG00000002958	rad54l	100	82.162	ENSMZEG00005018081	rad54l	100	82.409	Maylandia_zebra
ENSORLG00000002958	rad54l	99	80.135	ENSMGAG00000010634	RAD54L	99	79.595	Meleagris_gallopavo
ENSORLG00000002958	rad54l	99	78.706	ENSMAUG00000020076	Rad54l	99	78.437	Mesocricetus_auratus
ENSORLG00000002958	rad54l	99	78.523	ENSMICG00000003266	RAD54L	99	77.718	Microcebus_murinus
ENSORLG00000002958	rad54l	99	78.976	ENSMOCG00000001778	Rad54l	99	78.706	Microtus_ochrogaster
ENSORLG00000002958	rad54l	99	82.726	ENSMALG00000021148	rad54l	99	82.726	Monopterus_albus
ENSORLG00000002958	rad54l	99	74.021	MGP_CAROLIEiJ_G0026325	Rad54l	99	73.107	Mus_caroli
ENSORLG00000002958	rad54l	99	78.389	ENSMUSG00000028702	Rad54l	99	77.450	Mus_musculus
ENSORLG00000002958	rad54l	99	78.495	MGP_PahariEiJ_G0028657	Rad54l	99	78.091	Mus_pahari
ENSORLG00000002958	rad54l	99	78.523	MGP_SPRETEiJ_G0027297	Rad54l	99	77.584	Mus_spretus
ENSORLG00000002958	rad54l	99	77.852	ENSMPUG00000012883	RAD54L	99	77.181	Mustela_putorius_furo
ENSORLG00000002958	rad54l	99	78.226	ENSMLUG00000003763	RAD54L	99	77.823	Myotis_lucifugus
ENSORLG00000002958	rad54l	99	77.718	ENSNGAG00000024213	Rad54l	99	77.450	Nannospalax_galili
ENSORLG00000002958	rad54l	99	78.523	ENSNLEG00000016548	RAD54L	99	78.121	Nomascus_leucogenys
ENSORLG00000002958	rad54l	92	79.792	ENSMEUG00000006793	RAD54L	99	79.792	Notamacropus_eugenii
ENSORLG00000002958	rad54l	90	82.578	ENSOPRG00000016016	RAD54L	90	82.867	Ochotona_princeps
ENSORLG00000002958	rad54l	99	78.658	ENSODEG00000008519	RAD54L	99	78.255	Octodon_degus
ENSORLG00000002958	rad54l	100	82.432	ENSONIG00000007659	rad54l	100	82.679	Oreochromis_niloticus
ENSORLG00000002958	rad54l	99	78.284	ENSOCUG00000005229	RAD54L	99	77.480	Oryctolagus_cuniculus
ENSORLG00000002958	rad54l	99	99.590	ENSORLG00020006554	rad54l	99	99.853	Oryzias_latipes_hni
ENSORLG00000002958	rad54l	100	99.591	ENSORLG00015002907	rad54l	100	99.591	Oryzias_latipes_hsok
ENSORLG00000002958	rad54l	100	96.589	ENSOMEG00000007770	rad54l	100	96.589	Oryzias_melastigma
ENSORLG00000002958	rad54l	99	78.447	ENSOARG00000002264	RAD54L	99	78.179	Ovis_aries
ENSORLG00000002958	rad54l	99	78.523	ENSPPAG00000031222	RAD54L	99	78.121	Pan_paniscus
ENSORLG00000002958	rad54l	99	76.510	ENSPPRG00000010317	RAD54L	99	75.973	Panthera_pardus
ENSORLG00000002958	rad54l	99	76.510	ENSPTIG00000012200	RAD54L	99	75.973	Panthera_tigris_altaica
ENSORLG00000002958	rad54l	99	78.523	ENSPTRG00000000689	RAD54L	99	78.121	Pan_troglodytes
ENSORLG00000002958	rad54l	99	78.926	ENSPANG00000016295	RAD54L	99	78.523	Papio_anubis
ENSORLG00000002958	rad54l	100	78.003	ENSPKIG00000016172	rad54l	100	77.913	Paramormyrops_kingsleyae
ENSORLG00000002958	rad54l	98	80.218	ENSPSIG00000003258	RAD54L	99	79.809	Pelodiscus_sinensis
ENSORLG00000002958	rad54l	99	79.026	ENSPMGG00000016335	rad54l	99	79.048	Periophthalmus_magnuspinnatus
ENSORLG00000002958	rad54l	99	78.571	ENSPEMG00000011422	Rad54l	99	78.167	Peromyscus_maniculatus_bairdii
ENSORLG00000002958	rad54l	99	70.281	ENSPMAG00000007719	rad54l	99	69.478	Petromyzon_marinus
ENSORLG00000002958	rad54l	99	79.273	ENSPCIG00000029032	RAD54L	99	78.735	Phascolarctos_cinereus
ENSORLG00000002958	rad54l	86	85.984	ENSPFOG00000013732	rad54l	98	86.859	Poecilia_formosa
ENSORLG00000002958	rad54l	83	84.416	ENSPLAG00000023416	rad54l	99	84.416	Poecilia_latipinna
ENSORLG00000002958	rad54l	91	83.507	ENSPMEG00000008299	rad54l	100	83.507	Poecilia_mexicana
ENSORLG00000002958	rad54l	99	83.198	ENSPREG00000019955	rad54l	99	82.520	Poecilia_reticulata
ENSORLG00000002958	rad54l	93	77.362	ENSPPYG00000001398	RAD54L	99	76.827	Pongo_abelii
ENSORLG00000002958	rad54l	79	82.039	ENSPCAG00000005323	RAD54L	80	82.039	Procavia_capensis
ENSORLG00000002958	rad54l	99	78.389	ENSPCOG00000015423	RAD54L	99	77.450	Propithecus_coquereli
ENSORLG00000002958	rad54l	99	79.757	ENSPNYG00000002942	rad54l	99	79.757	Pundamilia_nyererei
ENSORLG00000002958	rad54l	100	83.671	ENSPNAG00000012483	rad54l	100	83.671	Pygocentrus_nattereri
ENSORLG00000002958	rad54l	99	78.255	ENSRNOG00000013148	Rad54l	99	77.315	Rattus_norvegicus
ENSORLG00000002958	rad54l	99	78.926	ENSRBIG00000043495	RAD54L	99	78.658	Rhinopithecus_bieti
ENSORLG00000002958	rad54l	99	78.926	ENSRROG00000020844	RAD54L	99	78.523	Rhinopithecus_roxellana
ENSORLG00000002958	rad54l	81	49.071	YGL163C	RAD54	71	49.309	Saccharomyces_cerevisiae
ENSORLG00000002958	rad54l	99	78.658	ENSSBOG00000024672	RAD54L	99	78.255	Saimiri_boliviensis_boliviensis
ENSORLG00000002958	rad54l	99	79.704	ENSSHAG00000000110	RAD54L	99	79.167	Sarcophilus_harrisii
ENSORLG00000002958	rad54l	100	86.216	ENSSDUG00000019147	rad54l	100	85.946	Seriola_dumerili
ENSORLG00000002958	rad54l	100	86.486	ENSSLDG00000012330	rad54l	100	86.216	Seriola_lalandi_dorsalis
ENSORLG00000002958	rad54l	83	76.404	ENSSARG00000006689	RAD54L	100	76.404	Sorex_araneus
ENSORLG00000002958	rad54l	99	86.160	ENSSPAG00000011016	rad54l	99	86.296	Stegastes_partitus
ENSORLG00000002958	rad54l	99	78.523	ENSSSCG00000003905	RAD54L	99	77.584	Sus_scrofa
ENSORLG00000002958	rad54l	99	79.245	ENSTGUG00000008233	RAD54L	99	78.841	Taeniopygia_guttata
ENSORLG00000002958	rad54l	99	82.674	ENSTRUG00000008410	rad54l	99	82.900	Takifugu_rubripes
ENSORLG00000002958	rad54l	99	82.186	ENSTNIG00000004716	rad54l	99	81.793	Tetraodon_nigroviridis
ENSORLG00000002958	rad54l	99	73.020	ENSTTRG00000006315	RAD54L	99	73.020	Tursiops_truncatus
ENSORLG00000002958	rad54l	99	77.297	ENSUAMG00000011824	RAD54L	99	76.486	Ursus_americanus
ENSORLG00000002958	rad54l	99	75.946	ENSUMAG00000023603	RAD54L	99	75.405	Ursus_maritimus
ENSORLG00000002958	rad54l	99	77.450	ENSVVUG00000007201	RAD54L	99	76.644	Vulpes_vulpes
ENSORLG00000002958	rad54l	96	75.035	ENSXETG00000004369	rad54l	97	76.012	Xenopus_tropicalis
ENSORLG00000002958	rad54l	55	81.841	ENSXCOG00000016028	rad54l	84	81.841	Xiphophorus_couchianus