EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000003008 (Gene tree)
Gene ID: 101169122
Gene Symbol: -
Alias: -
Full Name: polyadenylate-binding protein 1-like
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 17243 bases
Position: chr11:7186845-7204087
Accession: 101169122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000003764	PABP	PF00658.18	7.1e-31	1	1
ENSORLP00000003764	RRM_5	PF13893.6	3.2e-08	1	2
ENSORLP00000003764	RRM_5	PF13893.6	3.2e-08	2	2
ENSORLP00000003764	RRM_1	PF00076.22	3.8e-89	1	4
ENSORLP00000003764	RRM_1	PF00076.22	3.8e-89	2	4
ENSORLP00000003764	RRM_1	PF00076.22	3.8e-89	3	4
ENSORLP00000003764	RRM_1	PF00076.22	3.8e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000003765	-	5885	XM_004073802	ENSORLP00000003764	631 (aa)	XP_004073850	H2LCX2

Gene Model

Click here to download ENSORLG00000003008's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03013	RNA transport	KEGG
ola03015	mRNA surveillance pathway	KEGG
ola03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003008's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000003008	-	59	33.333	ENSORLG00000002306	-	54	33.333
ENSORLG00000003008	-	57	34.667	ENSORLG00000008077	rbm19	63	34.667
ENSORLG00000003008	-	56	39.726	ENSORLG00000007807	rbms2b	50	38.667
ENSORLG00000003008	-	60	37.349	ENSORLG00000005379	elavl3	90	37.349
ENSORLG00000003008	-	70	38.554	ENSORLG00000004600	celf5a	91	35.789
ENSORLG00000003008	-	60	36.145	ENSORLG00000028487	elavl4	81	36.145
ENSORLG00000003008	-	59	37.349	ENSORLG00000004217	ELAVL2	92	33.333
ENSORLG00000003008	-	99	88.599	ENSORLG00000002691	pabpc1a	96	89.189
ENSORLG00000003008	-	52	34.091	ENSORLG00000017111	-	50	34.884
ENSORLG00000003008	-	59	34.066	ENSORLG00000000087	-	88	34.066
ENSORLG00000003008	-	99	83.642	ENSORLG00000017479	pabpc4	98	83.385
ENSORLG00000003008	-	98	68.631	ENSORLG00000010322	pabpc1l	99	79.762

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003008	-	58	77.041	ENSG00000186288	PABPC1L2A	98	77.041	Homo_sapiens
ENSORLG00000003008	-	58	77.041	ENSG00000184388	PABPC1L2B	98	77.041	Homo_sapiens
ENSORLG00000003008	-	100	84.929	ENSAPOG00000015105	pabpc1a	100	84.929	Acanthochromis_polyacanthus
ENSORLG00000003008	-	100	87.066	ENSAPOG00000017776	pabpc1b	100	87.066	Acanthochromis_polyacanthus
ENSORLG00000003008	-	58	77.041	ENSAMEG00000019441	-	98	77.041	Ailuropoda_melanoleuca
ENSORLG00000003008	-	99	85.056	ENSACIG00000004685	pabpc1a	99	85.215	Amphilophus_citrinellus
ENSORLG00000003008	-	100	82.835	ENSACIG00000018366	pabpc1b	100	82.835	Amphilophus_citrinellus
ENSORLG00000003008	-	100	87.224	ENSAOCG00000019839	pabpc1b	100	87.224	Amphiprion_ocellaris
ENSORLG00000003008	-	100	84.301	ENSAOCG00000011656	pabpc1a	100	84.615	Amphiprion_ocellaris
ENSORLG00000003008	-	100	87.224	ENSAPEG00000010435	pabpc1b	100	87.224	Amphiprion_percula
ENSORLG00000003008	-	100	84.301	ENSAPEG00000006963	pabpc1a	100	84.615	Amphiprion_percula
ENSORLG00000003008	-	100	83.830	ENSATEG00000024852	pabpc1a	100	84.144	Anabas_testudineus
ENSORLG00000003008	-	100	86.635	ENSATEG00000012917	pabpc1b	100	86.635	Anabas_testudineus
ENSORLG00000003008	-	58	77.041	ENSANAG00000019429	-	98	77.041	Aotus_nancymaae
ENSORLG00000003008	-	58	77.041	ENSANAG00000019431	-	98	77.041	Aotus_nancymaae
ENSORLG00000003008	-	98	89.663	ENSACLG00000009399	pabpc1a	100	89.663	Astatotilapia_calliptera
ENSORLG00000003008	-	100	87.382	ENSACLG00000014335	pabpc1b	100	87.382	Astatotilapia_calliptera
ENSORLG00000003008	-	100	85.984	ENSAMXG00000008599	pabpc1b	100	85.984	Astyanax_mexicanus
ENSORLG00000003008	-	59	76.098	ENSBTAG00000050902	-	98	76.098	Bos_taurus
ENSORLG00000003008	-	60	74.163	ENSBTAG00000052491	-	98	74.163	Bos_taurus
ENSORLG00000003008	-	58	77.041	ENSCJAG00000041326	-	98	77.041	Callithrix_jacchus
ENSORLG00000003008	-	60	76.098	ENSCAFG00020002052	-	98	76.098	Canis_lupus_dingo
ENSORLG00000003008	-	58	77.041	ENSCHIG00000011138	-	98	77.041	Capra_hircus
ENSORLG00000003008	-	58	77.041	ENSCHIG00000006283	-	98	77.041	Capra_hircus
ENSORLG00000003008	-	58	77.041	ENSTSYG00000001775	-	98	77.041	Carlito_syrichta
ENSORLG00000003008	-	58	77.041	ENSCPOG00000009525	-	98	77.041	Cavia_porcellus
ENSORLG00000003008	-	58	77.041	ENSCCAG00000031524	-	98	77.041	Cebus_capucinus
ENSORLG00000003008	-	58	77.041	ENSCATG00000042826	-	98	77.041	Cercocebus_atys
ENSORLG00000003008	-	58	77.041	ENSCATG00000043125	-	98	77.041	Cercocebus_atys
ENSORLG00000003008	-	58	75.000	ENSCLAG00000017409	-	98	75.000	Chinchilla_lanigera
ENSORLG00000003008	-	58	75.000	ENSCLAG00000017412	-	98	75.000	Chinchilla_lanigera
ENSORLG00000003008	-	58	77.041	ENSCSAG00000000102	-	98	77.041	Chlorocebus_sabaeus
ENSORLG00000003008	-	58	77.348	ENSCGRG00001023387	-	96	75.258	Cricetulus_griseus_chok1gshd
ENSORLG00000003008	-	100	84.858	ENSCSEG00000015241	-	100	84.858	Cynoglossus_semilaevis
ENSORLG00000003008	-	99	84.420	ENSCSEG00000013324	pabpc1a	99	84.738	Cynoglossus_semilaevis
ENSORLG00000003008	-	100	84.615	ENSCVAG00000021872	pabpc1a	100	84.615	Cyprinodon_variegatus
ENSORLG00000003008	-	100	85.039	ENSCVAG00000005489	pabpc1b	100	85.512	Cyprinodon_variegatus
ENSORLG00000003008	-	100	86.457	ENSDARG00000021140	pabpc1b	99	91.489	Danio_rerio
ENSORLG00000003008	-	100	83.962	ENSDARG00000017219	pabpc1a	100	84.748	Danio_rerio
ENSORLG00000003008	-	58	77.249	ENSDNOG00000030926	-	98	75.510	Dasypus_novemcinctus
ENSORLG00000003008	-	58	74.490	ENSDORG00000011362	-	98	74.490	Dipodomys_ordii
ENSORLG00000003008	-	59	76.500	ENSEASG00005010399	-	95	76.500	Equus_asinus_asinus
ENSORLG00000003008	-	59	76.500	ENSECAG00000002620	-	95	76.500	Equus_caballus
ENSORLG00000003008	-	58	73.469	ENSEEUG00000008203	-	98	73.469	Erinaceus_europaeus
ENSORLG00000003008	-	60	57.759	ENSELUG00000005389	-	97	57.759	Esox_lucius
ENSORLG00000003008	-	99	84.858	ENSELUG00000003614	pabpc1a	100	84.858	Esox_lucius
ENSORLG00000003008	-	100	85.243	ENSELUG00000015062	-	100	85.243	Esox_lucius
ENSORLG00000003008	-	58	77.041	ENSFCAG00000039701	-	98	77.041	Felis_catus
ENSORLG00000003008	-	58	77.041	ENSFDAG00000005484	-	98	77.041	Fukomys_damarensis
ENSORLG00000003008	-	100	85.174	ENSFHEG00000008186	pabpc1b	100	86.120	Fundulus_heteroclitus
ENSORLG00000003008	-	100	84.458	ENSFHEG00000018979	pabpc1a	100	84.772	Fundulus_heteroclitus
ENSORLG00000003008	-	99	82.942	ENSGMOG00000013448	pabpc1a	99	83.099	Gadus_morhua
ENSORLG00000003008	-	100	78.972	ENSGMOG00000002448	-	100	78.972	Gadus_morhua
ENSORLG00000003008	-	100	86.120	ENSGAFG00000010193	pabpc1b	100	86.909	Gambusia_affinis
ENSORLG00000003008	-	100	84.458	ENSGAFG00000019750	pabpc1a	100	84.615	Gambusia_affinis
ENSORLG00000003008	-	100	83.568	ENSGACG00000003771	pabpc1b	100	83.568	Gasterosteus_aculeatus
ENSORLG00000003008	-	100	84.458	ENSGACG00000003572	pabpc1a	100	84.458	Gasterosteus_aculeatus
ENSORLG00000003008	-	58	77.041	ENSGGOG00000038606	-	98	77.041	Gorilla_gorilla
ENSORLG00000003008	-	58	77.041	ENSGGOG00000043933	-	98	77.041	Gorilla_gorilla
ENSORLG00000003008	-	100	87.382	ENSHBUG00000002075	pabpc1b	100	87.382	Haplochromis_burtoni
ENSORLG00000003008	-	98	89.663	ENSHBUG00000020487	pabpc1a	100	89.663	Haplochromis_burtoni
ENSORLG00000003008	-	58	76.020	ENSHGLG00000019762	-	98	76.020	Heterocephalus_glaber_female
ENSORLG00000003008	-	58	76.020	ENSHGLG00000019668	-	98	76.020	Heterocephalus_glaber_female
ENSORLG00000003008	-	58	76.020	ENSHGLG00100020854	-	98	76.020	Heterocephalus_glaber_male
ENSORLG00000003008	-	97	66.667	ENSHCOG00000003175	pabpc1b	99	66.667	Hippocampus_comes
ENSORLG00000003008	-	100	83.987	ENSHCOG00000013502	pabpc1a	100	84.301	Hippocampus_comes
ENSORLG00000003008	-	71	55.902	ENSIPUG00000021244	-	60	55.902	Ictalurus_punctatus
ENSORLG00000003008	-	100	80.727	ENSIPUG00000010791	-	100	80.727	Ictalurus_punctatus
ENSORLG00000003008	-	74	59.701	ENSIPUG00000018724	-	76	59.701	Ictalurus_punctatus
ENSORLG00000003008	-	100	83.438	ENSIPUG00000008848	pabpc1a	100	83.754	Ictalurus_punctatus
ENSORLG00000003008	-	62	76.531	ENSSTOG00000022096	-	98	76.531	Ictidomys_tridecemlineatus
ENSORLG00000003008	-	62	76.531	ENSSTOG00000026028	-	98	76.531	Ictidomys_tridecemlineatus
ENSORLG00000003008	-	58	75.510	ENSJJAG00000007037	-	98	75.510	Jaculus_jaculus
ENSORLG00000003008	-	100	84.772	ENSKMAG00000000605	pabpc1a	100	84.772	Kryptolebias_marmoratus
ENSORLG00000003008	-	99	85.920	ENSKMAG00000008049	pabpc1b	99	86.240	Kryptolebias_marmoratus
ENSORLG00000003008	-	100	84.144	ENSLBEG00000024002	-	100	84.144	Labrus_bergylta
ENSORLG00000003008	-	100	85.804	ENSLBEG00000026845	pabpc1b	100	85.804	Labrus_bergylta
ENSORLG00000003008	-	58	76.923	ENSLAFG00000023096	-	98	76.923	Loxodonta_africana
ENSORLG00000003008	-	58	76.650	ENSMFAG00000028878	-	98	76.650	Macaca_fascicularis
ENSORLG00000003008	-	58	77.041	ENSMMUG00000037681	-	98	77.041	Macaca_mulatta
ENSORLG00000003008	-	58	77.041	ENSMMUG00000009740	-	98	77.041	Macaca_mulatta
ENSORLG00000003008	-	58	77.041	ENSMMUG00000039929	-	98	77.041	Macaca_mulatta
ENSORLG00000003008	-	58	77.041	ENSMNEG00000037732	-	98	77.041	Macaca_nemestrina
ENSORLG00000003008	-	58	77.041	ENSMLEG00000027495	-	98	77.041	Mandrillus_leucophaeus
ENSORLG00000003008	-	100	87.539	ENSMAMG00000014610	pabpc1b	100	87.697	Mastacembelus_armatus
ENSORLG00000003008	-	99	88.942	ENSMAMG00000004502	-	100	88.942	Mastacembelus_armatus
ENSORLG00000003008	-	98	89.663	ENSMZEG00005025416	pabpc1a	100	89.663	Maylandia_zebra
ENSORLG00000003008	-	100	87.382	ENSMZEG00005026745	pabpc1b	100	87.382	Maylandia_zebra
ENSORLG00000003008	-	58	77.041	ENSMICG00000047642	-	98	77.041	Microcebus_murinus
ENSORLG00000003008	-	100	81.171	ENSMMOG00000018009	pabpc1b	100	81.171	Mola_mola
ENSORLG00000003008	-	99	88.462	ENSMMOG00000018044	pabpc1a	100	88.571	Mola_mola
ENSORLG00000003008	-	98	72.276	ENSMODG00000013156	-	98	72.364	Monodelphis_domestica
ENSORLG00000003008	-	99	64.706	ENSMODG00000015024	-	99	64.706	Monodelphis_domestica
ENSORLG00000003008	-	100	83.043	ENSMALG00000006066	pabpc1b	100	83.043	Monopterus_albus
ENSORLG00000003008	-	99	84.579	ENSMALG00000013020	-	99	84.738	Monopterus_albus
ENSORLG00000003008	-	58	78.689	ENSNGAG00000012688	-	98	75.510	Nannospalax_galili
ENSORLG00000003008	-	100	87.382	ENSNBRG00000013737	pabpc1b	100	87.382	Neolamprologus_brichardi
ENSORLG00000003008	-	98	89.663	ENSNBRG00000003068	-	100	89.663	Neolamprologus_brichardi
ENSORLG00000003008	-	58	77.041	ENSNLEG00000018128	-	98	77.041	Nomascus_leucogenys
ENSORLG00000003008	-	58	76.531	ENSODEG00000018540	-	98	76.531	Octodon_degus
ENSORLG00000003008	-	99	85.374	ENSONIG00000006871	-	99	85.533	Oreochromis_niloticus
ENSORLG00000003008	-	100	87.697	ENSONIG00000002717	pabpc1b	100	87.697	Oreochromis_niloticus
ENSORLG00000003008	-	58	77.041	ENSOCUG00000002565	-	98	77.041	Oryctolagus_cuniculus
ENSORLG00000003008	-	100	83.516	ENSORLG00020022398	pabpc1a	100	83.987	Oryzias_latipes_hni
ENSORLG00000003008	-	100	99.366	ENSORLG00020022259	-	100	99.366	Oryzias_latipes_hni
ENSORLG00000003008	-	100	83.359	ENSORLG00015013633	pabpc1	100	83.830	Oryzias_latipes_hsok
ENSORLG00000003008	-	100	99.208	ENSORLG00015010932	-	100	99.208	Oryzias_latipes_hsok
ENSORLG00000003008	-	100	83.830	ENSOMEG00000020219	pabpc1a	100	84.301	Oryzias_melastigma
ENSORLG00000003008	-	99	88.010	ENSOMEG00000013627	pabpc1b	100	88.010	Oryzias_melastigma
ENSORLG00000003008	-	58	77.041	ENSOGAG00000029513	-	98	77.041	Otolemur_garnettii
ENSORLG00000003008	-	58	77.041	ENSOGAG00000026047	-	98	77.041	Otolemur_garnettii
ENSORLG00000003008	-	58	77.041	ENSOARG00000005943	-	98	77.041	Ovis_aries
ENSORLG00000003008	-	58	77.041	ENSPPAG00000012920	-	98	77.041	Pan_paniscus
ENSORLG00000003008	-	58	77.041	ENSPPRG00000011809	-	98	77.041	Panthera_pardus
ENSORLG00000003008	-	58	77.041	ENSPPRG00000011804	-	98	77.041	Panthera_pardus
ENSORLG00000003008	-	58	77.041	ENSPTRG00000028252	-	98	77.041	Pan_troglodytes
ENSORLG00000003008	-	58	77.041	ENSPANG00000011549	-	98	77.041	Papio_anubis
ENSORLG00000003008	-	100	86.929	ENSPKIG00000005676	pabpc1b	100	86.929	Paramormyrops_kingsleyae
ENSORLG00000003008	-	71	87.892	ENSPMGG00000022487	pabpc1a	92	87.892	Periophthalmus_magnuspinnatus
ENSORLG00000003008	-	71	88.789	ENSPMGG00000023134	-	97	88.591	Periophthalmus_magnuspinnatus
ENSORLG00000003008	-	99	68.413	ENSPCIG00000016995	-	55	68.413	Phascolarctos_cinereus
ENSORLG00000003008	-	100	85.647	ENSPFOG00000005917	pabpc1b	100	86.435	Poecilia_formosa
ENSORLG00000003008	-	100	83.051	ENSPFOG00000010815	pabpc1a	100	83.359	Poecilia_formosa
ENSORLG00000003008	-	100	84.458	ENSPLAG00000004114	pabpc1a	100	84.772	Poecilia_latipinna
ENSORLG00000003008	-	100	85.962	ENSPLAG00000001388	pabpc1b	100	86.751	Poecilia_latipinna
ENSORLG00000003008	-	100	85.647	ENSPMEG00000014399	pabpc1b	100	86.435	Poecilia_mexicana
ENSORLG00000003008	-	100	84.458	ENSPMEG00000001334	pabpc1a	100	84.772	Poecilia_mexicana
ENSORLG00000003008	-	100	85.962	ENSPREG00000010911	pabpc1b	100	86.751	Poecilia_reticulata
ENSORLG00000003008	-	99	89.183	ENSPREG00000019595	pabpc1a	100	89.183	Poecilia_reticulata
ENSORLG00000003008	-	58	77.041	ENSPPYG00000020468	-	98	77.041	Pongo_abelii
ENSORLG00000003008	-	58	77.041	ENSPCAG00000005308	-	98	77.041	Procavia_capensis
ENSORLG00000003008	-	58	76.531	ENSPCOG00000026349	-	98	76.531	Propithecus_coquereli
ENSORLG00000003008	-	63	77.436	ENSPVAG00000016117	-	98	77.436	Pteropus_vampyrus
ENSORLG00000003008	-	100	87.382	ENSPNYG00000012578	pabpc1b	100	87.382	Pundamilia_nyererei
ENSORLG00000003008	-	99	85.374	ENSPNYG00000005192	pabpc1a	99	85.533	Pundamilia_nyererei
ENSORLG00000003008	-	100	84.906	ENSPNAG00000028408	pabpc1a	100	84.906	Pygocentrus_nattereri
ENSORLG00000003008	-	100	85.827	ENSPNAG00000024626	pabpc1b	100	85.827	Pygocentrus_nattereri
ENSORLG00000003008	-	88	84.615	ENSRBIG00000028738	-	95	84.615	Rhinopithecus_bieti
ENSORLG00000003008	-	58	77.041	ENSRBIG00000027173	-	98	77.041	Rhinopithecus_bieti
ENSORLG00000003008	-	58	77.041	ENSRROG00000017404	-	98	77.041	Rhinopithecus_roxellana
ENSORLG00000003008	-	97	62.641	ENSSHAG00000000511	-	99	62.641	Sarcophilus_harrisii
ENSORLG00000003008	-	100	84.882	ENSSFOG00015006662	pabpc1a	100	85.512	Scleropages_formosus
ENSORLG00000003008	-	100	86.435	ENSSFOG00015002752	-	100	86.435	Scleropages_formosus
ENSORLG00000003008	-	61	76.879	ENSSFOG00015019668	-	66	76.879	Scleropages_formosus
ENSORLG00000003008	-	99	86.306	ENSSMAG00000006869	pabpc1b	99	86.465	Scophthalmus_maximus
ENSORLG00000003008	-	100	84.144	ENSSMAG00000010803	pabpc1a	100	84.144	Scophthalmus_maximus
ENSORLG00000003008	-	100	84.615	ENSSDUG00000006675	pabpc1a	100	84.615	Seriola_dumerili
ENSORLG00000003008	-	100	85.489	ENSSDUG00000011965	pabpc1b	100	85.489	Seriola_dumerili
ENSORLG00000003008	-	100	87.167	ENSSLDG00000014156	pabpc1b	100	87.167	Seriola_lalandi_dorsalis
ENSORLG00000003008	-	100	84.615	ENSSLDG00000011661	pabpc1a	100	84.615	Seriola_lalandi_dorsalis
ENSORLG00000003008	-	100	84.301	ENSSPAG00000014453	-	100	84.615	Stegastes_partitus
ENSORLG00000003008	-	100	87.697	ENSSPAG00000019265	pabpc1b	100	87.855	Stegastes_partitus
ENSORLG00000003008	-	58	77.041	ENSSSCG00000036336	-	98	77.041	Sus_scrofa
ENSORLG00000003008	-	58	77.041	ENSSSCG00000032167	-	98	77.041	Sus_scrofa
ENSORLG00000003008	-	100	84.252	ENSTRUG00000003767	-	100	84.458	Takifugu_rubripes
ENSORLG00000003008	-	100	83.229	ENSTRUG00000011577	-	100	83.699	Takifugu_rubripes
ENSORLG00000003008	-	100	80.371	ENSTNIG00000013307	pabpc1a	100	80.835	Tetraodon_nigroviridis
ENSORLG00000003008	-	100	83.856	ENSTNIG00000009153	pabpc1b	100	83.856	Tetraodon_nigroviridis
ENSORLG00000003008	-	58	77.041	ENSTTRG00000013181	-	98	77.041	Tursiops_truncatus
ENSORLG00000003008	-	58	77.041	ENSUAMG00000008089	-	98	77.041	Ursus_americanus
ENSORLG00000003008	-	97	52.769	ENSUMAG00000023926	-	89	67.127	Ursus_maritimus
ENSORLG00000003008	-	58	77.041	ENSUMAG00000003364	-	98	77.041	Ursus_maritimus
ENSORLG00000003008	-	59	75.743	ENSVVUG00000015892	-	98	75.743	Vulpes_vulpes
ENSORLG00000003008	-	99	43.498	ENSXETG00000015439	-	100	43.049	Xenopus_tropicalis
ENSORLG00000003008	-	100	83.201	ENSXCOG00000019901	pabpc1b	100	83.201	Xiphophorus_couchianus
ENSORLG00000003008	-	100	81.013	ENSXCOG00000017066	pabpc1a	100	81.646	Xiphophorus_couchianus
ENSORLG00000003008	-	100	83.987	ENSXMAG00000002555	pabpc1a	100	84.301	Xiphophorus_maculatus
ENSORLG00000003008	-	100	85.962	ENSXMAG00000003753	pabpc1b	100	86.751	Xiphophorus_maculatus