EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000003062 (Gene tree)
Gene ID: 101159759
Gene Symbol: sf3b4
Alias: -
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 6705 bases
Position: chr11:7217350-7224054
Accession: 101159759
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000034483	RRM_1	PF00076.22	2.9e-39	1	2
ENSORLP00000034483	RRM_1	PF00076.22	2.9e-39	2	2
ENSORLP00000003820	RRM_1	PF00076.22	3.2e-39	1	2
ENSORLP00000003820	RRM_1	PF00076.22	3.2e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000003821	-	2007	XM_023959648	ENSORLP00000003820	399 (aa)	XP_023815416	H2LD23
ENSORLT00000027770	-	5360	-	ENSORLP00000034483	388 (aa)	-	-

Gene Model

Click here to download ENSORLG00000003062's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003062's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000003062	sf3b4	61	36.842	ENSORLG00000004217	ELAVL2	88	32.121
ENSORLG00000003062	sf3b4	64	34.021	ENSORLG00000002529	-	88	34.010

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003062	sf3b4	59	97.807	ENSG00000143368	SF3B4	99	96.296	Homo_sapiens
ENSORLG00000003062	sf3b4	59	98.696	ENSAPOG00000017647	sf3b4	86	90.805	Acanthochromis_polyacanthus
ENSORLG00000003062	sf3b4	59	97.807	ENSAMEG00000010073	SF3B4	55	96.983	Ailuropoda_melanoleuca
ENSORLG00000003062	sf3b4	61	82.624	ENSACIG00000018455	sf3b4	73	93.952	Amphilophus_citrinellus
ENSORLG00000003062	sf3b4	58	99.558	ENSAOCG00000019801	sf3b4	86	90.805	Amphiprion_ocellaris
ENSORLG00000003062	sf3b4	58	99.558	ENSAPEG00000010365	sf3b4	86	90.805	Amphiprion_percula
ENSORLG00000003062	sf3b4	59	98.261	ENSATEG00000012844	sf3b4	86	84.900	Anabas_testudineus
ENSORLG00000003062	sf3b4	55	100.000	ENSACAG00000010019	SF3B4	56	98.276	Anolis_carolinensis
ENSORLG00000003062	sf3b4	59	97.807	ENSANAG00000031025	SF3B4	55	96.983	Aotus_nancymaae
ENSORLG00000003062	sf3b4	61	98.312	ENSACLG00000014260	sf3b4	74	91.030	Astatotilapia_calliptera
ENSORLG00000003062	sf3b4	59	98.696	ENSAMXG00000008282	sf3b4	58	97.845	Astyanax_mexicanus
ENSORLG00000003062	sf3b4	59	97.807	ENSBTAG00000012495	SF3B4	55	96.983	Bos_taurus
ENSORLG00000003062	sf3b4	52	96.040	ENSBTAG00000012793	-	51	95.146	Bos_taurus
ENSORLG00000003062	sf3b4	55	81.395	WBGene00004723	sap-49	55	81.690	Caenorhabditis_elegans
ENSORLG00000003062	sf3b4	59	97.807	ENSCAFG00000011617	SF3B4	55	96.983	Canis_familiaris
ENSORLG00000003062	sf3b4	59	97.807	ENSCAFG00020019775	SF3B4	55	96.983	Canis_lupus_dingo
ENSORLG00000003062	sf3b4	59	97.807	ENSCHIG00000025663	-	55	96.983	Capra_hircus
ENSORLG00000003062	sf3b4	79	59.804	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSORLG00000003062	sf3b4	59	97.807	ENSTSYG00000009295	SF3B4	55	96.983	Carlito_syrichta
ENSORLG00000003062	sf3b4	61	92.593	ENSCAPG00000006451	SF3B4	50	96.045	Cavia_aperea
ENSORLG00000003062	sf3b4	59	97.807	ENSCPOG00000008267	SF3B4	55	96.983	Cavia_porcellus
ENSORLG00000003062	sf3b4	81	66.764	ENSCCAG00000019823	-	50	87.560	Cebus_capucinus
ENSORLG00000003062	sf3b4	59	96.930	ENSCCAG00000021751	-	52	96.121	Cebus_capucinus
ENSORLG00000003062	sf3b4	59	97.807	ENSCATG00000033114	SF3B4	55	96.983	Cercocebus_atys
ENSORLG00000003062	sf3b4	59	97.807	ENSCLAG00000015851	SF3B4	55	96.983	Chinchilla_lanigera
ENSORLG00000003062	sf3b4	59	97.807	ENSCSAG00000018129	SF3B4	55	96.983	Chlorocebus_sabaeus
ENSORLG00000003062	sf3b4	55	100.000	ENSCPBG00000008041	SF3B4	56	97.845	Chrysemys_picta_bellii
ENSORLG00000003062	sf3b4	58	88.393	ENSCING00000002337	-	58	90.654	Ciona_intestinalis
ENSORLG00000003062	sf3b4	54	91.429	ENSCSAVG00000007809	-	89	89.881	Ciona_savignyi
ENSORLG00000003062	sf3b4	59	97.807	ENSCANG00000035579	SF3B4	55	96.983	Colobus_angolensis_palliatus
ENSORLG00000003062	sf3b4	59	97.807	ENSCGRG00001003590	Sf3b4	55	96.983	Cricetulus_griseus_chok1gshd
ENSORLG00000003062	sf3b4	59	97.807	ENSCGRG00000016914	Sf3b4	55	96.983	Cricetulus_griseus_crigri
ENSORLG00000003062	sf3b4	77	94.314	ENSCSEG00000015258	sf3b4	66	94.654	Cynoglossus_semilaevis
ENSORLG00000003062	sf3b4	69	88.519	ENSCVAG00000005536	sf3b4	88	86.207	Cyprinodon_variegatus
ENSORLG00000003062	sf3b4	59	98.696	ENSDARG00000018574	sf3b4	75	89.073	Danio_rerio
ENSORLG00000003062	sf3b4	57	92.273	ENSDNOG00000048908	-	54	91.518	Dasypus_novemcinctus
ENSORLG00000003062	sf3b4	97	60.145	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSORLG00000003062	sf3b4	59	97.807	ENSDORG00000016366	Sf3b4	55	96.983	Dipodomys_ordii
ENSORLG00000003062	sf3b4	57	86.425	FBgn0015818	Spx	62	88.318	Drosophila_melanogaster
ENSORLG00000003062	sf3b4	59	87.719	ENSETEG00000008963	SF3B4	55	87.069	Echinops_telfairi
ENSORLG00000003062	sf3b4	59	97.807	ENSEASG00005001477	SF3B4	55	96.983	Equus_asinus_asinus
ENSORLG00000003062	sf3b4	59	97.807	ENSECAG00000024737	SF3B4	55	96.983	Equus_caballus
ENSORLG00000003062	sf3b4	59	99.130	ENSELUG00000012876	sf3b4	74	91.060	Esox_lucius
ENSORLG00000003062	sf3b4	59	97.807	ENSFCAG00000010106	SF3B4	55	96.983	Felis_catus
ENSORLG00000003062	sf3b4	59	97.807	ENSFDAG00000009286	SF3B4	55	96.983	Fukomys_damarensis
ENSORLG00000003062	sf3b4	61	97.468	ENSFHEG00000008211	sf3b4	50	87.679	Fundulus_heteroclitus
ENSORLG00000003062	sf3b4	58	97.826	ENSGMOG00000002519	sf3b4	68	97.414	Gadus_morhua
ENSORLG00000003062	sf3b4	55	100.000	ENSGALG00000013352	SF3B4	56	97.845	Gallus_gallus
ENSORLG00000003062	sf3b4	69	93.309	ENSGAFG00000010181	sf3b4	76	89.369	Gambusia_affinis
ENSORLG00000003062	sf3b4	58	99.558	ENSGACG00000003819	sf3b4	74	83.388	Gasterosteus_aculeatus
ENSORLG00000003062	sf3b4	80	71.656	ENSGGOG00000038845	-	55	88.318	Gorilla_gorilla
ENSORLG00000003062	sf3b4	59	97.807	ENSGGOG00000004761	SF3B4	55	96.983	Gorilla_gorilla
ENSORLG00000003062	sf3b4	61	98.312	ENSHBUG00000002028	sf3b4	74	91.030	Haplochromis_burtoni
ENSORLG00000003062	sf3b4	59	97.807	ENSHGLG00000012360	SF3B4	55	96.983	Heterocephalus_glaber_female
ENSORLG00000003062	sf3b4	59	97.807	ENSHGLG00100008533	SF3B4	55	96.983	Heterocephalus_glaber_male
ENSORLG00000003062	sf3b4	59	97.357	ENSHCOG00000003014	sf3b4	58	96.567	Hippocampus_comes
ENSORLG00000003062	sf3b4	59	98.696	ENSIPUG00000012242	Sf3b4	75	89.109	Ictalurus_punctatus
ENSORLG00000003062	sf3b4	59	97.807	ENSSTOG00000000684	-	55	96.983	Ictidomys_tridecemlineatus
ENSORLG00000003062	sf3b4	58	71.111	ENSJJAG00000022500	Sf3b4	56	70.504	Jaculus_jaculus
ENSORLG00000003062	sf3b4	61	98.312	ENSKMAG00000008154	sf3b4	76	88.704	Kryptolebias_marmoratus
ENSORLG00000003062	sf3b4	60	98.707	ENSLBEG00000026818	sf3b4	86	87.679	Labrus_bergylta
ENSORLG00000003062	sf3b4	59	97.368	ENSLACG00000004436	SF3B4	64	96.121	Latimeria_chalumnae
ENSORLG00000003062	sf3b4	60	98.276	ENSLOCG00000009048	sf3b4	55	98.276	Lepisosteus_oculatus
ENSORLG00000003062	sf3b4	59	97.807	ENSLAFG00000008531	SF3B4	55	96.983	Loxodonta_africana
ENSORLG00000003062	sf3b4	59	97.807	ENSMFAG00000042395	SF3B4	55	96.983	Macaca_fascicularis
ENSORLG00000003062	sf3b4	89	62.604	ENSMFAG00000039067	-	59	78.539	Macaca_fascicularis
ENSORLG00000003062	sf3b4	59	97.807	ENSMMUG00000007256	SF3B4	55	96.983	Macaca_mulatta
ENSORLG00000003062	sf3b4	89	62.050	ENSMNEG00000031526	-	59	78.082	Macaca_nemestrina
ENSORLG00000003062	sf3b4	59	97.807	ENSMNEG00000031839	SF3B4	55	96.983	Macaca_nemestrina
ENSORLG00000003062	sf3b4	59	97.807	ENSMLEG00000038667	SF3B4	55	96.983	Mandrillus_leucophaeus
ENSORLG00000003062	sf3b4	61	97.890	ENSMAMG00000014692	sf3b4	87	88.319	Mastacembelus_armatus
ENSORLG00000003062	sf3b4	61	98.312	ENSMZEG00005026741	sf3b4	74	91.030	Maylandia_zebra
ENSORLG00000003062	sf3b4	55	100.000	ENSMGAG00000000653	SF3B4	56	97.845	Meleagris_gallopavo
ENSORLG00000003062	sf3b4	59	97.807	ENSMAUG00000015266	Sf3b4	55	96.983	Mesocricetus_auratus
ENSORLG00000003062	sf3b4	59	97.807	ENSMICG00000044961	SF3B4	55	96.983	Microcebus_murinus
ENSORLG00000003062	sf3b4	53	98.049	ENSMOCG00000014155	-	55	94.619	Microtus_ochrogaster
ENSORLG00000003062	sf3b4	59	97.807	ENSMOCG00000013658	-	55	96.983	Microtus_ochrogaster
ENSORLG00000003062	sf3b4	59	98.696	ENSMMOG00000018032	sf3b4	59	98.707	Mola_mola
ENSORLG00000003062	sf3b4	59	97.807	ENSMODG00000018767	SF3B4	55	96.983	Monodelphis_domestica
ENSORLG00000003062	sf3b4	58	99.115	ENSMALG00000006174	sf3b4	87	86.895	Monopterus_albus
ENSORLG00000003062	sf3b4	59	97.807	MGP_CAROLIEiJ_G0025365	Sf3b4	55	96.983	Mus_caroli
ENSORLG00000003062	sf3b4	59	97.807	ENSMUSG00000068856	Sf3b4	55	96.983	Mus_musculus
ENSORLG00000003062	sf3b4	59	97.807	MGP_PahariEiJ_G0026809	Sf3b4	55	96.983	Mus_pahari
ENSORLG00000003062	sf3b4	59	97.807	MGP_SPRETEiJ_G0026309	Sf3b4	55	96.983	Mus_spretus
ENSORLG00000003062	sf3b4	59	97.807	ENSMPUG00000005563	SF3B4	55	96.983	Mustela_putorius_furo
ENSORLG00000003062	sf3b4	59	97.807	ENSMLUG00000010789	SF3B4	55	96.983	Myotis_lucifugus
ENSORLG00000003062	sf3b4	59	97.807	ENSNGAG00000016337	Sf3b4	55	96.983	Nannospalax_galili
ENSORLG00000003062	sf3b4	61	98.734	ENSNBRG00000013865	sf3b4	74	91.362	Neolamprologus_brichardi
ENSORLG00000003062	sf3b4	90	67.639	ENSNLEG00000000537	-	59	87.500	Nomascus_leucogenys
ENSORLG00000003062	sf3b4	99	49.425	ENSNLEG00000009693	-	99	49.425	Nomascus_leucogenys
ENSORLG00000003062	sf3b4	59	93.421	ENSOPRG00000010808	SF3B4	55	92.672	Ochotona_princeps
ENSORLG00000003062	sf3b4	59	80.786	ENSODEG00000003597	-	57	80.258	Octodon_degus
ENSORLG00000003062	sf3b4	89	58.939	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSORLG00000003062	sf3b4	61	97.890	ENSONIG00000002730	sf3b4	74	90.698	Oreochromis_niloticus
ENSORLG00000003062	sf3b4	68	72.491	ENSOANG00000004768	-	50	81.944	Ornithorhynchus_anatinus
ENSORLG00000003062	sf3b4	59	97.807	ENSOCUG00000004614	SF3B4	55	96.983	Oryctolagus_cuniculus
ENSORLG00000003062	sf3b4	100	100.000	ENSORLG00020000687	sf3b4	100	100.000	Oryzias_latipes_hni
ENSORLG00000003062	sf3b4	100	99.749	ENSORLG00015010989	sf3b4	100	99.749	Oryzias_latipes_hsok
ENSORLG00000003062	sf3b4	100	95.750	ENSOMEG00000013694	sf3b4	100	95.750	Oryzias_melastigma
ENSORLG00000003062	sf3b4	59	97.807	ENSOGAG00000006265	SF3B4	55	96.983	Otolemur_garnettii
ENSORLG00000003062	sf3b4	78	70.199	ENSOARG00000007368	-	55	80.973	Ovis_aries
ENSORLG00000003062	sf3b4	59	97.807	ENSOARG00000020718	-	55	96.983	Ovis_aries
ENSORLG00000003062	sf3b4	79	73.585	ENSPPAG00000030024	-	57	86.638	Pan_paniscus
ENSORLG00000003062	sf3b4	59	97.807	ENSPPAG00000040904	SF3B4	55	96.983	Pan_paniscus
ENSORLG00000003062	sf3b4	59	97.807	ENSPPRG00000007384	SF3B4	55	96.983	Panthera_pardus
ENSORLG00000003062	sf3b4	59	97.807	ENSPTIG00000014530	SF3B4	55	96.983	Panthera_tigris_altaica
ENSORLG00000003062	sf3b4	79	72.611	ENSPTRG00000049727	-	58	87.069	Pan_troglodytes
ENSORLG00000003062	sf3b4	59	97.807	ENSPTRG00000001243	SF3B4	55	96.983	Pan_troglodytes
ENSORLG00000003062	sf3b4	59	97.807	ENSPANG00000005126	SF3B4	55	96.983	Papio_anubis
ENSORLG00000003062	sf3b4	60	98.707	ENSPKIG00000020669	sf3b4	62	98.707	Paramormyrops_kingsleyae
ENSORLG00000003062	sf3b4	59	97.807	ENSPEMG00000017568	Sf3b4	55	96.983	Peromyscus_maniculatus_bairdii
ENSORLG00000003062	sf3b4	90	72.208	ENSPMAG00000007842	-	50	95.327	Petromyzon_marinus
ENSORLG00000003062	sf3b4	59	97.807	ENSPCIG00000008765	SF3B4	55	96.983	Phascolarctos_cinereus
ENSORLG00000003062	sf3b4	70	89.706	ENSPFOG00000005754	sf3b4	76	89.369	Poecilia_formosa
ENSORLG00000003062	sf3b4	70	89.706	ENSPLAG00000001401	sf3b4	82	89.369	Poecilia_latipinna
ENSORLG00000003062	sf3b4	70	90.074	ENSPREG00000011076	sf3b4	66	93.309	Poecilia_reticulata
ENSORLG00000003062	sf3b4	54	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSORLG00000003062	sf3b4	59	97.807	ENSPCOG00000015399	SF3B4	55	96.983	Propithecus_coquereli
ENSORLG00000003062	sf3b4	59	97.807	ENSPVAG00000014171	SF3B4	55	96.983	Pteropus_vampyrus
ENSORLG00000003062	sf3b4	61	98.312	ENSPNYG00000012700	sf3b4	74	91.030	Pundamilia_nyererei
ENSORLG00000003062	sf3b4	59	98.261	ENSPNAG00000000686	sf3b4	77	88.449	Pygocentrus_nattereri
ENSORLG00000003062	sf3b4	59	97.807	ENSRNOG00000021181	Sf3b4	55	96.983	Rattus_norvegicus
ENSORLG00000003062	sf3b4	59	97.807	ENSRBIG00000043392	SF3B4	55	96.983	Rhinopithecus_bieti
ENSORLG00000003062	sf3b4	96	56.965	ENSRROG00000028213	-	57	73.661	Rhinopithecus_roxellana
ENSORLG00000003062	sf3b4	59	97.807	ENSRROG00000029366	SF3B4	55	96.983	Rhinopithecus_roxellana
ENSORLG00000003062	sf3b4	98	57.002	ENSSBOG00000025174	-	50	75.431	Saimiri_boliviensis_boliviensis
ENSORLG00000003062	sf3b4	59	97.368	ENSSBOG00000012310	-	55	96.552	Saimiri_boliviensis_boliviensis
ENSORLG00000003062	sf3b4	59	92.982	ENSSHAG00000004043	SF3B4	54	92.241	Sarcophilus_harrisii
ENSORLG00000003062	sf3b4	61	97.468	ENSSFOG00015008864	sf3b4	74	90.759	Scleropages_formosus
ENSORLG00000003062	sf3b4	77	83.667	ENSSMAG00000006837	sf3b4	75	91.060	Scophthalmus_maximus
ENSORLG00000003062	sf3b4	59	99.130	ENSSDUG00000012064	sf3b4	86	89.459	Seriola_dumerili
ENSORLG00000003062	sf3b4	59	99.127	ENSSLDG00000014226	sf3b4	86	89.174	Seriola_lalandi_dorsalis
ENSORLG00000003062	sf3b4	61	97.034	ENSSPUG00000001028	SF3B4	58	97.845	Sphenodon_punctatus
ENSORLG00000003062	sf3b4	59	98.696	ENSSPAG00000019219	sf3b4	86	90.571	Stegastes_partitus
ENSORLG00000003062	sf3b4	81	55.660	ENSSSCG00000039440	-	56	63.362	Sus_scrofa
ENSORLG00000003062	sf3b4	59	97.807	ENSSSCG00000006665	-	55	96.983	Sus_scrofa
ENSORLG00000003062	sf3b4	61	97.034	ENSTGUG00000004470	SF3B4	91	97.845	Taeniopygia_guttata
ENSORLG00000003062	sf3b4	82	88.365	ENSTRUG00000004516	sf3b4	74	90.203	Takifugu_rubripes
ENSORLG00000003062	sf3b4	75	89.726	ENSTNIG00000009156	sf3b4	75	90.541	Tetraodon_nigroviridis
ENSORLG00000003062	sf3b4	59	97.807	ENSTTRG00000005217	SF3B4	55	96.983	Tursiops_truncatus
ENSORLG00000003062	sf3b4	59	97.807	ENSUAMG00000022468	SF3B4	55	96.983	Ursus_americanus
ENSORLG00000003062	sf3b4	59	97.807	ENSUMAG00000003802	SF3B4	55	96.983	Ursus_maritimus
ENSORLG00000003062	sf3b4	56	97.685	ENSVPAG00000008152	SF3B4	53	96.818	Vicugna_pacos
ENSORLG00000003062	sf3b4	59	97.807	ENSVVUG00000007732	-	79	81.230	Vulpes_vulpes
ENSORLG00000003062	sf3b4	95	68.421	ENSXETG00000011038	sf3b4	80	75.161	Xenopus_tropicalis
ENSORLG00000003062	sf3b4	70	88.603	ENSXCOG00000019895	sf3b4	76	90.033	Xiphophorus_couchianus
ENSORLG00000003062	sf3b4	59	98.690	ENSXMAG00000003772	sf3b4	76	89.701	Xiphophorus_maculatus