EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000003144 (Gene tree)
Gene ID: 101167735
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 10788 bases
Position: chr17:3576312-3587099
Accession: 101167735
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000003914	RRM_1	PF00076.22	4.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000003915	-	3235	XM_004078595	ENSORLP00000003914	330 (aa)	XP_004078643	H2LDB2

Gene Model

Click here to download ENSORLG00000003144's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003144's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000003144	-	66	54.701	ENSORLG00000017934	-	75	51.739
ENSORLG00000003144	-	78	72.243	ENSORLG00000009999	-	82	69.962
ENSORLG00000003144	-	94	46.106	ENSORLG00000012719	-	72	56.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003144	-	66	56.306	ENSG00000184672	RALYL	91	79.221	Homo_sapiens
ENSORLG00000003144	-	78	85.057	ENSAPOG00000006963	hnrnpc	81	80.460	Acanthochromis_polyacanthus
ENSORLG00000003144	-	97	87.267	ENSACIG00000016568	-	99	86.792	Amphilophus_citrinellus
ENSORLG00000003144	-	79	80.524	ENSACIG00000000270	-	84	79.468	Amphilophus_citrinellus
ENSORLG00000003144	-	78	85.441	ENSAOCG00000003896	-	81	80.843	Amphiprion_ocellaris
ENSORLG00000003144	-	100	85.714	ENSAOCG00000021616	-	100	85.498	Amphiprion_ocellaris
ENSORLG00000003144	-	78	85.441	ENSAPEG00000001489	-	81	80.843	Amphiprion_percula
ENSORLG00000003144	-	97	76.875	ENSAPEG00000019962	-	100	76.875	Amphiprion_percula
ENSORLG00000003144	-	79	81.509	ENSATEG00000011734	-	84	80.077	Anabas_testudineus
ENSORLG00000003144	-	82	90.146	ENSATEG00000018006	-	100	87.048	Anabas_testudineus
ENSORLG00000003144	-	66	52.790	ENSAPLG00000015574	RALYL	75	54.148	Anas_platyrhynchos
ENSORLG00000003144	-	66	54.506	ENSACAG00000028464	RALYL	74	55.022	Anolis_carolinensis
ENSORLG00000003144	-	66	56.306	ENSANAG00000023383	RALYL	73	56.164	Aotus_nancymaae
ENSORLG00000003144	-	82	89.781	ENSACLG00000005707	-	90	89.781	Astatotilapia_calliptera
ENSORLG00000003144	-	78	80.077	ENSACLG00000013636	-	84	78.927	Astatotilapia_calliptera
ENSORLG00000003144	-	78	80.460	ENSACLG00000000995	-	81	81.938	Astatotilapia_calliptera
ENSORLG00000003144	-	82	76.103	ENSAMXG00000034915	zgc:55733	86	74.031	Astyanax_mexicanus
ENSORLG00000003144	-	66	74.312	ENSAMXG00000042946	hnrnpc	99	70.792	Astyanax_mexicanus
ENSORLG00000003144	-	66	56.306	ENSCJAG00000000402	RALYL	73	56.164	Callithrix_jacchus
ENSORLG00000003144	-	83	48.136	ENSCPOG00000012314	RALYL	74	54.386	Cavia_porcellus
ENSORLG00000003144	-	66	56.306	ENSCCAG00000025003	RALYL	75	79.221	Cebus_capucinus
ENSORLG00000003144	-	66	56.306	ENSCATG00000042145	RALYL	73	56.164	Cercocebus_atys
ENSORLG00000003144	-	83	48.136	ENSCLAG00000005228	RALYL	74	54.386	Chinchilla_lanigera
ENSORLG00000003144	-	66	53.219	ENSCHOG00000013228	RALYL	74	51.528	Choloepus_hoffmanni
ENSORLG00000003144	-	66	56.306	ENSCANG00000039144	RALYL	73	56.164	Colobus_angolensis_palliatus
ENSORLG00000003144	-	83	48.311	ENSCGRG00001009241	Ralyl	74	53.712	Cricetulus_griseus_chok1gshd
ENSORLG00000003144	-	69	74.138	ENSCSEG00000019769	-	74	71.930	Cynoglossus_semilaevis
ENSORLG00000003144	-	78	85.659	ENSCSEG00000021349	-	78	83.333	Cynoglossus_semilaevis
ENSORLG00000003144	-	85	65.141	ENSCVAG00000002797	-	85	64.885	Cyprinodon_variegatus
ENSORLG00000003144	-	100	85.503	ENSCVAG00000016981	-	100	85.843	Cyprinodon_variegatus
ENSORLG00000003144	-	82	77.491	ENSDARG00000103845	zgc:55733	90	73.930	Danio_rerio
ENSORLG00000003144	-	77	79.921	ENSDARG00000053810	hnrnpc	95	71.429	Danio_rerio
ENSORLG00000003144	-	83	48.148	ENSDORG00000003721	Ralyl	74	55.022	Dipodomys_ordii
ENSORLG00000003144	-	52	55.249	ENSETEG00000014028	RALYL	81	58.084	Echinops_telfairi
ENSORLG00000003144	-	66	47.768	ENSEBUG00000006049	RALYL	73	44.595	Eptatretus_burgeri
ENSORLG00000003144	-	82	41.135	ENSEBUG00000012363	hnrnpc	80	40.357	Eptatretus_burgeri
ENSORLG00000003144	-	83	48.649	ENSEEUG00000007202	RALYL	76	54.386	Erinaceus_europaeus
ENSORLG00000003144	-	82	77.061	ENSELUG00000004132	-	99	73.125	Esox_lucius
ENSORLG00000003144	-	96	64.486	ENSELUG00000007714	-	88	75.093	Esox_lucius
ENSORLG00000003144	-	93	44.410	ENSFALG00000008647	RALYL	96	56.561	Ficedula_albicollis
ENSORLG00000003144	-	79	88.519	ENSFHEG00000007278	-	99	80.967	Fundulus_heteroclitus
ENSORLG00000003144	-	85	75.958	ENSFHEG00000003605	-	83	75.191	Fundulus_heteroclitus
ENSORLG00000003144	-	66	56.757	ENSGALG00000036938	RALYL	74	54.148	Gallus_gallus
ENSORLG00000003144	-	95	70.000	ENSGAFG00000020486	-	82	74.427	Gambusia_affinis
ENSORLG00000003144	-	97	86.462	ENSGAFG00000020992	-	99	87.227	Gambusia_affinis
ENSORLG00000003144	-	100	78.171	ENSGACG00000017772	-	96	86.770	Gasterosteus_aculeatus
ENSORLG00000003144	-	68	72.566	ENSGACG00000018932	-	85	67.117	Gasterosteus_aculeatus
ENSORLG00000003144	-	66	56.306	ENSGGOG00000000841	RALYL	73	56.164	Gorilla_gorilla
ENSORLG00000003144	-	78	80.843	ENSHBUG00000018342	-	98	67.052	Haplochromis_burtoni
ENSORLG00000003144	-	100	85.886	ENSHBUG00000010527	-	100	85.886	Haplochromis_burtoni
ENSORLG00000003144	-	83	47.797	ENSHGLG00000004866	RALYL	74	53.947	Heterocephalus_glaber_female
ENSORLG00000003144	-	83	47.797	ENSHGLG00100017480	RALYL	74	53.947	Heterocephalus_glaber_male
ENSORLG00000003144	-	91	73.397	ENSHCOG00000012333	hnrnpc	91	81.754	Hippocampus_comes
ENSORLG00000003144	-	82	76.471	ENSIPUG00000011271	hnrnpc	99	76.596	Ictalurus_punctatus
ENSORLG00000003144	-	82	76.471	ENSIPUG00000008666	zgc:55733	94	76.233	Ictalurus_punctatus
ENSORLG00000003144	-	83	47.811	ENSSTOG00000012583	RALYL	76	54.585	Ictidomys_tridecemlineatus
ENSORLG00000003144	-	85	75.887	ENSKMAG00000011170	-	81	78.161	Kryptolebias_marmoratus
ENSORLG00000003144	-	100	85.586	ENSKMAG00000018265	-	100	84.685	Kryptolebias_marmoratus
ENSORLG00000003144	-	93	70.717	ENSLBEG00000024418	-	84	71.536	Labrus_bergylta
ENSORLG00000003144	-	85	76.678	ENSLBEG00000006979	-	85	75.486	Labrus_bergylta
ENSORLG00000003144	-	100	83.030	ENSLBEG00000006193	-	96	84.810	Labrus_bergylta
ENSORLG00000003144	-	82	71.218	ENSLOCG00000002560	hnrnpc	88	70.881	Lepisosteus_oculatus
ENSORLG00000003144	-	66	56.306	ENSMNEG00000033288	RALYL	73	56.164	Macaca_nemestrina
ENSORLG00000003144	-	66	56.306	ENSMLEG00000038284	RALYL	73	56.164	Mandrillus_leucophaeus
ENSORLG00000003144	-	79	81.061	ENSMAMG00000012236	-	84	78.077	Mastacembelus_armatus
ENSORLG00000003144	-	82	89.051	ENSMAMG00000008033	-	100	82.831	Mastacembelus_armatus
ENSORLG00000003144	-	78	80.460	ENSMZEG00005020460	-	87	77.652	Maylandia_zebra
ENSORLG00000003144	-	100	85.586	ENSMZEG00005024249	-	100	84.985	Maylandia_zebra
ENSORLG00000003144	-	83	48.311	ENSMAUG00000015149	Ralyl	74	53.712	Mesocricetus_auratus
ENSORLG00000003144	-	66	55.656	ENSMICG00000005558	RALYL	78	79.221	Microcebus_murinus
ENSORLG00000003144	-	83	48.311	ENSMOCG00000017371	Ralyl	74	53.712	Microtus_ochrogaster
ENSORLG00000003144	-	82	80.443	ENSMMOG00000021465	-	88	80.769	Mola_mola
ENSORLG00000003144	-	91	79.000	ENSMMOG00000019520	-	100	77.333	Mola_mola
ENSORLG00000003144	-	79	73.004	ENSMALG00000007520	-	83	71.042	Monopterus_albus
ENSORLG00000003144	-	82	85.714	ENSMALG00000014623	-	84	86.081	Monopterus_albus
ENSORLG00000003144	-	83	47.973	ENSMUSG00000039717	Ralyl	91	77.922	Mus_musculus
ENSORLG00000003144	-	66	56.277	ENSMPUG00000010724	RALYL	74	54.148	Mustela_putorius_furo
ENSORLG00000003144	-	96	44.242	ENSNGAG00000013375	Ralyl	74	53.712	Nannospalax_galili
ENSORLG00000003144	-	100	86.787	ENSNBRG00000015676	-	100	86.787	Neolamprologus_brichardi
ENSORLG00000003144	-	80	80.827	ENSNBRG00000004912	-	92	77.922	Neolamprologus_brichardi
ENSORLG00000003144	-	66	56.306	ENSNLEG00000002702	RALYL	70	56.164	Nomascus_leucogenys
ENSORLG00000003144	-	57	49.500	ENSOPRG00000013650	-	98	47.475	Ochotona_princeps
ENSORLG00000003144	-	83	48.136	ENSODEG00000001012	RALYL	74	53.947	Octodon_degus
ENSORLG00000003144	-	100	86.186	ENSONIG00000018350	-	100	86.186	Oreochromis_niloticus
ENSORLG00000003144	-	78	81.609	ENSONIG00000007859	-	90	81.579	Oreochromis_niloticus
ENSORLG00000003144	-	78	71.863	ENSORLG00020018228	hnrnpc	82	69.582	Oryzias_latipes_hni
ENSORLG00000003144	-	100	98.494	ENSORLG00015009460	-	100	98.494	Oryzias_latipes_hsok
ENSORLG00000003144	-	78	72.243	ENSORLG00015019755	-	82	69.962	Oryzias_latipes_hsok
ENSORLG00000003144	-	78	73.764	ENSOMEG00000020488	-	81	71.483	Oryzias_melastigma
ENSORLG00000003144	-	100	94.848	ENSOMEG00000022665	-	100	94.848	Oryzias_melastigma
ENSORLG00000003144	-	66	56.306	ENSPPAG00000038705	RALYL	73	56.164	Pan_paniscus
ENSORLG00000003144	-	66	58.744	ENSPPRG00000018612	RALYL	73	56.561	Panthera_pardus
ENSORLG00000003144	-	66	58.744	ENSPTIG00000020331	RALYL	73	56.561	Panthera_tigris_altaica
ENSORLG00000003144	-	66	56.306	ENSPTRG00000020381	RALYL	73	56.164	Pan_troglodytes
ENSORLG00000003144	-	66	56.306	ENSPANG00000029305	RALYL	73	56.164	Papio_anubis
ENSORLG00000003144	-	82	77.143	ENSPKIG00000008592	-	81	77.068	Paramormyrops_kingsleyae
ENSORLG00000003144	-	81	76.087	ENSPKIG00000022837	-	81	80.827	Paramormyrops_kingsleyae
ENSORLG00000003144	-	66	54.506	ENSPSIG00000011135	RALYL	74	54.585	Pelodiscus_sinensis
ENSORLG00000003144	-	95	61.022	ENSPMGG00000017774	-	92	64.502	Periophthalmus_magnuspinnatus
ENSORLG00000003144	-	69	87.773	ENSPMGG00000013144	-	82	84.000	Periophthalmus_magnuspinnatus
ENSORLG00000003144	-	83	48.311	ENSPEMG00000016447	Ralyl	74	53.712	Peromyscus_maniculatus_bairdii
ENSORLG00000003144	-	66	53.846	ENSPMAG00000002407	RALYL	96	52.609	Petromyzon_marinus
ENSORLG00000003144	-	100	86.567	ENSPFOG00000002643	-	100	86.866	Poecilia_formosa
ENSORLG00000003144	-	95	69.906	ENSPFOG00000001583	-	82	76.718	Poecilia_formosa
ENSORLG00000003144	-	100	86.364	ENSPLAG00000000061	-	100	86.364	Poecilia_latipinna
ENSORLG00000003144	-	95	67.925	ENSPLAG00000015305	-	82	74.330	Poecilia_latipinna
ENSORLG00000003144	-	95	71.562	ENSPMEG00000004802	-	82	76.718	Poecilia_mexicana
ENSORLG00000003144	-	100	85.970	ENSPMEG00000016524	-	100	86.269	Poecilia_mexicana
ENSORLG00000003144	-	78	76.718	ENSPREG00000007928	-	82	75.573	Poecilia_reticulata
ENSORLG00000003144	-	82	91.176	ENSPREG00000001852	-	89	91.176	Poecilia_reticulata
ENSORLG00000003144	-	66	47.005	ENSPPYG00000018710	-	62	68.807	Pongo_abelii
ENSORLG00000003144	-	70	52.049	ENSPVAG00000010821	RALYL	78	52.083	Pteropus_vampyrus
ENSORLG00000003144	-	98	74.383	ENSPNYG00000003747	-	90	90.146	Pundamilia_nyererei
ENSORLG00000003144	-	80	81.203	ENSPNYG00000020293	-	86	79.310	Pundamilia_nyererei
ENSORLG00000003144	-	82	72.202	ENSPNAG00000019200	zgc:55733	81	73.384	Pygocentrus_nattereri
ENSORLG00000003144	-	77	76.863	ENSPNAG00000015686	hnrnpc	89	76.190	Pygocentrus_nattereri
ENSORLG00000003144	-	66	56.306	ENSRROG00000023925	RALYL	80	78.481	Rhinopithecus_roxellana
ENSORLG00000003144	-	79	78.519	ENSSFOG00015012924	-	80	97.468	Scleropages_formosus
ENSORLG00000003144	-	82	74.910	ENSSFOG00015012015	-	81	82.805	Scleropages_formosus
ENSORLG00000003144	-	78	78.927	ENSSMAG00000013592	-	80	77.395	Scophthalmus_maximus
ENSORLG00000003144	-	100	82.229	ENSSMAG00000011147	-	96	86.792	Scophthalmus_maximus
ENSORLG00000003144	-	85	80.070	ENSSDUG00000001723	-	81	80.843	Seriola_dumerili
ENSORLG00000003144	-	100	81.818	ENSSDUG00000006730	-	100	81.818	Seriola_dumerili
ENSORLG00000003144	-	82	85.662	ENSSLDG00000007474	-	92	84.926	Seriola_lalandi_dorsalis
ENSORLG00000003144	-	83	81.588	ENSSLDG00000007454	-	82	81.226	Seriola_lalandi_dorsalis
ENSORLG00000003144	-	60	68.468	ENSSARG00000002374	RALYL	75	46.606	Sorex_araneus
ENSORLG00000003144	-	84	81.915	ENSSPAG00000023204	-	81	81.992	Stegastes_partitus
ENSORLG00000003144	-	100	84.242	ENSSPAG00000013996	-	100	85.542	Stegastes_partitus
ENSORLG00000003144	-	81	46.102	ENSTGUG00000011689	RALYL	79	52.941	Taeniopygia_guttata
ENSORLG00000003144	-	82	77.574	ENSTRUG00000020158	-	82	74.903	Takifugu_rubripes
ENSORLG00000003144	-	79	77.011	ENSTNIG00000000334	-	93	75.379	Tetraodon_nigroviridis
ENSORLG00000003144	-	79	77.528	ENSTNIG00000007427	-	83	77.947	Tetraodon_nigroviridis
ENSORLG00000003144	-	66	50.000	ENSTBEG00000005551	RALYL	86	50.000	Tupaia_belangeri
ENSORLG00000003144	-	83	47.079	ENSTTRG00000015762	RALYL	74	51.570	Tursiops_truncatus
ENSORLG00000003144	-	66	52.489	ENSVPAG00000008501	RALYL	74	51.818	Vicugna_pacos
ENSORLG00000003144	-	88	68.707	ENSXCOG00000006552	-	81	69.084	Xiphophorus_couchianus
ENSORLG00000003144	-	95	70.625	ENSXMAG00000009333	-	82	74.427	Xiphophorus_maculatus
ENSORLG00000003144	-	82	91.544	ENSXMAG00000022849	-	86	91.544	Xiphophorus_maculatus