EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000003317 (Gene tree)
Gene ID: 101166408
Gene Symbol: smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 18346 bases
Position: chr14:9184712-9203057
Accession: 101166408
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000004123	EST1	PF10374.9	1.1e-13	1	1
ENSORLP00000004123	EST1_DNA_bind	PF10373.9	7.2e-57	1	1
ENSORLP00000004123	PIN_4	PF13638.6	1.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000004124	-	8682	XM_011483284	ENSORLP00000004123	1641 (aa)	XP_011481586	H2LDV9

Gene Model

Click here to download ENSORLG00000003317's gene model file

Pathways

Pathway ID	Pathway Name	Source
ola03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003317's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003317	smg6	75	54.312	ENSG00000070366	SMG6	100	57.091	Homo_sapiens
ENSORLG00000003317	smg6	100	70.311	ENSAPOG00000019448	smg6	100	70.490	Acanthochromis_polyacanthus
ENSORLG00000003317	smg6	85	54.867	ENSAMEG00000007632	SMG6	94	54.216	Ailuropoda_melanoleuca
ENSORLG00000003317	smg6	93	68.581	ENSACIG00000012997	smg6	100	68.041	Amphilophus_citrinellus
ENSORLG00000003317	smg6	100	70.848	ENSAOCG00000002630	smg6	100	71.087	Amphiprion_ocellaris
ENSORLG00000003317	smg6	100	70.430	ENSAPEG00000019101	smg6	100	70.669	Amphiprion_percula
ENSORLG00000003317	smg6	100	68.549	ENSATEG00000006483	smg6	100	68.152	Anabas_testudineus
ENSORLG00000003317	smg6	62	49.762	ENSACAG00000011783	SMG6	87	47.220	Anolis_carolinensis
ENSORLG00000003317	smg6	79	52.419	ENSANAG00000035760	SMG6	89	51.803	Aotus_nancymaae
ENSORLG00000003317	smg6	100	68.206	ENSACLG00000005288	smg6	100	68.653	Astatotilapia_calliptera
ENSORLG00000003317	smg6	75	65.269	ENSAMXG00000017326	smg6	97	65.392	Astyanax_mexicanus
ENSORLG00000003317	smg6	75	54.531	ENSBTAG00000000267	SMG6	84	54.353	Bos_taurus
ENSORLG00000003317	smg6	74	54.154	ENSCJAG00000001820	SMG6	83	53.895	Callithrix_jacchus
ENSORLG00000003317	smg6	74	54.631	ENSCAFG00000019260	SMG6	83	54.137	Canis_familiaris
ENSORLG00000003317	smg6	74	54.631	ENSCAFG00020009770	SMG6	83	54.137	Canis_lupus_dingo
ENSORLG00000003317	smg6	75	54.844	ENSCHIG00000021998	SMG6	84	54.431	Capra_hircus
ENSORLG00000003317	smg6	74	54.474	ENSTSYG00000003406	SMG6	100	56.545	Carlito_syrichta
ENSORLG00000003317	smg6	74	45.462	ENSCAPG00000016197	SMG6	81	50.794	Cavia_aperea
ENSORLG00000003317	smg6	74	54.324	ENSCPOG00000014878	SMG6	83	59.330	Cavia_porcellus
ENSORLG00000003317	smg6	79	52.199	ENSCCAG00000035801	SMG6	89	51.582	Cebus_capucinus
ENSORLG00000003317	smg6	74	54.710	ENSCATG00000031956	SMG6	83	54.488	Cercocebus_atys
ENSORLG00000003317	smg6	74	54.646	ENSCLAG00000006748	SMG6	82	58.852	Chinchilla_lanigera
ENSORLG00000003317	smg6	74	54.945	ENSCSAG00000013800	SMG6	83	54.803	Chlorocebus_sabaeus
ENSORLG00000003317	smg6	76	53.297	ENSCPBG00000020369	SMG6	85	53.390	Chrysemys_picta_bellii
ENSORLG00000003317	smg6	74	54.631	ENSCANG00000031764	SMG6	100	57.455	Colobus_angolensis_palliatus
ENSORLG00000003317	smg6	74	49.961	ENSCGRG00000007782	Smg6	90	47.759	Cricetulus_griseus_crigri
ENSORLG00000003317	smg6	100	63.560	ENSCSEG00000012757	smg6	100	63.842	Cynoglossus_semilaevis
ENSORLG00000003317	smg6	100	65.075	ENSCVAG00000012789	smg6	100	64.896	Cyprinodon_variegatus
ENSORLG00000003317	smg6	100	53.631	ENSDARG00000100481	smg6	100	53.357	Danio_rerio
ENSORLG00000003317	smg6	86	54.353	ENSDNOG00000048283	SMG6	97	53.072	Dasypus_novemcinctus
ENSORLG00000003317	smg6	74	50.938	ENSDORG00000016614	Smg6	83	58.852	Dipodomys_ordii
ENSORLG00000003317	smg6	67	87.500	ENSETEG00000016790	SMG6	76	87.500	Echinops_telfairi
ENSORLG00000003317	smg6	60	47.030	ENSEBUG00000005059	smg6	63	46.634	Eptatretus_burgeri
ENSORLG00000003317	smg6	74	54.874	ENSEASG00005009318	SMG6	83	54.144	Equus_asinus_asinus
ENSORLG00000003317	smg6	74	54.796	ENSECAG00000006519	SMG6	83	54.065	Equus_caballus
ENSORLG00000003317	smg6	86	46.656	ENSEEUG00000003493	SMG6	91	56.236	Erinaceus_europaeus
ENSORLG00000003317	smg6	76	70.929	ENSELUG00000005934	smg6	93	68.262	Esox_lucius
ENSORLG00000003317	smg6	74	55.102	ENSFCAG00000028817	SMG6	83	54.374	Felis_catus
ENSORLG00000003317	smg6	77	52.901	ENSFALG00000006538	SMG6	88	53.075	Ficedula_albicollis
ENSORLG00000003317	smg6	74	54.781	ENSFDAG00000015106	SMG6	82	58.852	Fukomys_damarensis
ENSORLG00000003317	smg6	100	67.489	ENSFHEG00000013282	smg6	100	66.827	Fundulus_heteroclitus
ENSORLG00000003317	smg6	88	53.590	ENSGALG00000003108	SMG6	97	53.167	Gallus_gallus
ENSORLG00000003317	smg6	100	67.168	ENSGAFG00000000379	smg6	100	66.566	Gambusia_affinis
ENSORLG00000003317	smg6	78	73.552	ENSGACG00000020521	smg6	98	73.474	Gasterosteus_aculeatus
ENSORLG00000003317	smg6	77	52.039	ENSGAGG00000025617	SMG6	89	51.735	Gopherus_agassizii
ENSORLG00000003317	smg6	74	54.624	ENSGGOG00000017156	SMG6	83	54.131	Gorilla_gorilla
ENSORLG00000003317	smg6	100	68.125	ENSHBUG00000021311	smg6	100	67.506	Haplochromis_burtoni
ENSORLG00000003317	smg6	74	54.631	ENSHGLG00000012882	SMG6	82	59.330	Heterocephalus_glaber_female
ENSORLG00000003317	smg6	74	54.710	ENSHGLG00100017815	SMG6	82	59.330	Heterocephalus_glaber_male
ENSORLG00000003317	smg6	69	64.772	ENSHCOG00000008761	smg6	87	65.873	Hippocampus_comes
ENSORLG00000003317	smg6	100	51.255	ENSIPUG00000012493	smg6	100	51.170	Ictalurus_punctatus
ENSORLG00000003317	smg6	78	52.651	ENSSTOG00000028127	SMG6	83	58.852	Ictidomys_tridecemlineatus
ENSORLG00000003317	smg6	55	52.063	ENSJJAG00000015367	Smg6	75	50.412	Jaculus_jaculus
ENSORLG00000003317	smg6	100	67.767	ENSKMAG00000000279	smg6	100	67.347	Kryptolebias_marmoratus
ENSORLG00000003317	smg6	100	67.024	ENSLBEG00000002184	smg6	100	66.250	Labrus_bergylta
ENSORLG00000003317	smg6	74	54.232	ENSLAFG00000001261	SMG6	83	53.737	Loxodonta_africana
ENSORLG00000003317	smg6	74	54.945	ENSMFAG00000003394	SMG6	83	54.724	Macaca_fascicularis
ENSORLG00000003317	smg6	74	54.867	ENSMMUG00000023161	SMG6	83	54.724	Macaca_mulatta
ENSORLG00000003317	smg6	74	53.029	ENSMNEG00000044592	SMG6	83	52.802	Macaca_nemestrina
ENSORLG00000003317	smg6	70	59.194	ENSMLEG00000029353	SMG6	84	58.319	Mandrillus_leucophaeus
ENSORLG00000003317	smg6	100	68.459	ENSMAMG00000020119	smg6	100	69.221	Mastacembelus_armatus
ENSORLG00000003317	smg6	100	67.986	ENSMZEG00005024736	smg6	100	67.587	Maylandia_zebra
ENSORLG00000003317	smg6	53	52.580	ENSMGAG00000005401	-	81	51.913	Meleagris_gallopavo
ENSORLG00000003317	smg6	74	55.137	ENSMICG00000012913	SMG6	83	54.488	Microcebus_murinus
ENSORLG00000003317	smg6	100	63.234	ENSMMOG00000010883	smg6	100	61.970	Mola_mola
ENSORLG00000003317	smg6	92	53.730	ENSMODG00000010622	SMG6	100	53.198	Monodelphis_domestica
ENSORLG00000003317	smg6	100	67.776	ENSMALG00000001106	smg6	100	67.302	Monopterus_albus
ENSORLG00000003317	smg6	74	53.997	MGP_CAROLIEiJ_G0016729	Smg6	95	65.029	Mus_caroli
ENSORLG00000003317	smg6	74	54.075	ENSMUSG00000038290	Smg6	95	65.029	Mus_musculus
ENSORLG00000003317	smg6	74	53.339	MGP_PahariEiJ_G0017866	Smg6	92	66.465	Mus_pahari
ENSORLG00000003317	smg6	74	53.997	MGP_SPRETEiJ_G0017572	Smg6	95	64.740	Mus_spretus
ENSORLG00000003317	smg6	74	55.024	ENSMPUG00000013046	SMG6	83	54.295	Mustela_putorius_furo
ENSORLG00000003317	smg6	74	54.925	ENSMLUG00000005739	SMG6	83	54.308	Myotis_lucifugus
ENSORLG00000003317	smg6	75	53.474	ENSNGAG00000007287	Smg6	90	51.601	Nannospalax_galili
ENSORLG00000003317	smg6	98	66.378	ENSNBRG00000009511	smg6	99	67.795	Neolamprologus_brichardi
ENSORLG00000003317	smg6	74	54.702	ENSNLEG00000017171	SMG6	100	57.091	Nomascus_leucogenys
ENSORLG00000003317	smg6	79	51.822	ENSMEUG00000015804	SMG6	91	51.747	Notamacropus_eugenii
ENSORLG00000003317	smg6	51	60.622	ENSOPRG00000000579	SMG6	83	59.596	Ochotona_princeps
ENSORLG00000003317	smg6	78	47.705	ENSODEG00000008038	SMG6	87	46.882	Octodon_degus
ENSORLG00000003317	smg6	99	70.830	ENSONIG00000005594	smg6	100	72.769	Oreochromis_niloticus
ENSORLG00000003317	smg6	74	55.189	ENSOCUG00000013018	SMG6	83	54.367	Oryctolagus_cuniculus
ENSORLG00000003317	smg6	100	98.903	ENSORLG00020015343	smg6	100	98.903	Oryzias_latipes_hni
ENSORLG00000003317	smg6	100	98.781	ENSORLG00015020454	smg6	100	98.781	Oryzias_latipes_hsok
ENSORLG00000003317	smg6	100	89.031	ENSOMEG00000010838	smg6	100	90.128	Oryzias_melastigma
ENSORLG00000003317	smg6	74	54.588	ENSOGAG00000004483	SMG6	73	57.796	Otolemur_garnettii
ENSORLG00000003317	smg6	75	54.773	ENSOARG00000015076	SMG6	86	54.510	Ovis_aries
ENSORLG00000003317	smg6	85	54.553	ENSPPAG00000043296	SMG6	94	54.131	Pan_paniscus
ENSORLG00000003317	smg6	74	55.031	ENSPPRG00000014581	SMG6	83	54.416	Panthera_pardus
ENSORLG00000003317	smg6	74	55.031	ENSPTIG00000008925	SMG6	100	57.091	Panthera_tigris_altaica
ENSORLG00000003317	smg6	74	54.710	ENSPTRG00000008544	SMG6	100	57.091	Pan_troglodytes
ENSORLG00000003317	smg6	74	54.631	ENSPANG00000024588	SMG6	83	54.488	Papio_anubis
ENSORLG00000003317	smg6	68	51.646	ENSPSIG00000006660	SMG6	81	51.391	Pelodiscus_sinensis
ENSORLG00000003317	smg6	94	75.848	ENSPMGG00000000844	smg6	99	73.854	Periophthalmus_magnuspinnatus
ENSORLG00000003317	smg6	78	52.954	ENSPEMG00000020707	Smg6	84	57.895	Peromyscus_maniculatus_bairdii
ENSORLG00000003317	smg6	100	67.836	ENSPFOG00000012035	smg6	99	71.683	Poecilia_formosa
ENSORLG00000003317	smg6	100	67.775	ENSPLAG00000017660	smg6	100	66.989	Poecilia_latipinna
ENSORLG00000003317	smg6	100	67.775	ENSPMEG00000000258	smg6	100	66.989	Poecilia_mexicana
ENSORLG00000003317	smg6	100	67.288	ENSPREG00000010066	smg6	100	66.807	Poecilia_reticulata
ENSORLG00000003317	smg6	74	50.625	ENSPPYG00000007790	SMG6	83	50.196	Pongo_abelii
ENSORLG00000003317	smg6	71	58.597	ENSPCAG00000000552	SMG6	79	57.692	Procavia_capensis
ENSORLG00000003317	smg6	74	54.937	ENSPCOG00000020925	SMG6	83	54.288	Propithecus_coquereli
ENSORLG00000003317	smg6	71	61.253	ENSPVAG00000002159	SMG6	69	60.997	Pteropus_vampyrus
ENSORLG00000003317	smg6	93	66.452	ENSPNYG00000024151	smg6	99	67.551	Pundamilia_nyererei
ENSORLG00000003317	smg6	100	49.676	ENSPNAG00000015480	smg6	100	49.882	Pygocentrus_nattereri
ENSORLG00000003317	smg6	78	52.438	ENSRNOG00000003041	Smg6	95	65.029	Rattus_norvegicus
ENSORLG00000003317	smg6	74	54.945	ENSRBIG00000024746	SMG6	83	54.724	Rhinopithecus_bieti
ENSORLG00000003317	smg6	74	54.945	ENSRROG00000030423	SMG6	100	57.455	Rhinopithecus_roxellana
ENSORLG00000003317	smg6	79	52.706	ENSSBOG00000022518	SMG6	88	50.595	Saimiri_boliviensis_boliviensis
ENSORLG00000003317	smg6	74	54.279	ENSSHAG00000010045	SMG6	83	54.041	Sarcophilus_harrisii
ENSORLG00000003317	smg6	94	53.024	ENSSFOG00015005436	smg6	91	53.151	Scleropages_formosus
ENSORLG00000003317	smg6	100	66.964	ENSSMAG00000019777	smg6	100	66.548	Scophthalmus_maximus
ENSORLG00000003317	smg6	100	70.339	ENSSDUG00000016412	smg6	100	69.803	Seriola_dumerili
ENSORLG00000003317	smg6	91	70.735	ENSSLDG00000020747	smg6	98	70.144	Seriola_lalandi_dorsalis
ENSORLG00000003317	smg6	79	51.763	ENSSPUG00000007152	SMG6	86	50.633	Sphenodon_punctatus
ENSORLG00000003317	smg6	100	70.553	ENSSPAG00000015633	smg6	100	71.139	Stegastes_partitus
ENSORLG00000003317	smg6	74	55.181	ENSSSCG00000017826	SMG6	83	54.216	Sus_scrofa
ENSORLG00000003317	smg6	77	52.874	ENSTGUG00000005836	SMG6	88	53.035	Taeniopygia_guttata
ENSORLG00000003317	smg6	91	63.314	ENSTRUG00000000358	smg6	98	64.058	Takifugu_rubripes
ENSORLG00000003317	smg6	92	71.889	ENSTNIG00000016164	smg6	100	71.856	Tetraodon_nigroviridis
ENSORLG00000003317	smg6	74	52.732	ENSTBEG00000011424	SMG6	83	51.978	Tupaia_belangeri
ENSORLG00000003317	smg6	66	55.619	ENSTTRG00000001175	SMG6	74	54.908	Tursiops_truncatus
ENSORLG00000003317	smg6	74	55.102	ENSUAMG00000025152	SMG6	85	54.203	Ursus_americanus
ENSORLG00000003317	smg6	74	54.867	ENSUMAG00000009306	SMG6	85	54.216	Ursus_maritimus
ENSORLG00000003317	smg6	60	88.889	ENSVPAG00000000225	SMG6	70	88.889	Vicugna_pacos
ENSORLG00000003317	smg6	74	55.109	ENSVVUG00000021727	SMG6	85	54.589	Vulpes_vulpes
ENSORLG00000003317	smg6	66	53.226	ENSXETG00000023799	SMG6	74	52.669	Xenopus_tropicalis
ENSORLG00000003317	smg6	98	65.180	ENSXCOG00000009867	smg6	99	64.569	Xiphophorus_couchianus
ENSORLG00000003317	smg6	100	67.585	ENSXMAG00000010321	smg6	100	66.747	Xiphophorus_maculatus