EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000003327 (Gene tree)
Gene ID: 101157348
Gene Symbol: tnrc6c2
Alias: -
Full Name: trinucleotide repeat-containing gene 6C protein
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Plus strand
Length: 42016 bases
Position: chr1:9642140-9684155
Accession: 101157348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000030611	Ago_hook	PF10427.9	3.7e-06	1	1
ENSORLP00000004140	Ago_hook	PF10427.9	4.4e-06	1	1
ENSORLP00000004140	RRM_1	PF00076.22	0.00018	1	1
ENSORLP00000030611	RRM_1	PF00076.22	0.00019	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000045548	-	6684	XM_011473887	ENSORLP00000030611	1908 (aa)	XP_011472189	UPI0005CC26B5
ENSORLT00000004141	-	6567	XM_011473888	ENSORLP00000004140	1869 (aa)	XP_011472190	H2LDX6

Gene Model

Click here to download ENSORLG00000003327's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003327's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000003327	tnrc6c2	90	53.825	ENSORLG00000009837	tnrc6c1	100	76.923

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003327	tnrc6c2	99	82.519	ENSAOCG00000017648	tnrc6c2	100	82.384	Amphiprion_ocellaris
ENSORLG00000003327	tnrc6c2	83	82.203	ENSATEG00000003656	tnrc6c2	57	85.920	Anabas_testudineus
ENSORLG00000003327	tnrc6c2	99	81.307	ENSACLG00000006469	tnrc6c2	99	80.990	Astatotilapia_calliptera
ENSORLG00000003327	tnrc6c2	87	57.151	ENSAMXG00000009579	tnrc6c2	100	56.639	Astyanax_mexicanus
ENSORLG00000003327	tnrc6c2	91	56.592	ENSDARG00000103851	tnrc6c2	100	56.661	Danio_rerio
ENSORLG00000003327	tnrc6c2	83	54.423	ENSELUG00000008149	-	100	51.584	Esox_lucius
ENSORLG00000003327	tnrc6c2	87	60.757	ENSELUG00000007206	tnrc6c2	59	73.895	Esox_lucius
ENSORLG00000003327	tnrc6c2	92	80.219	ENSFHEG00000003901	tnrc6c2	100	82.569	Fundulus_heteroclitus
ENSORLG00000003327	tnrc6c2	98	70.172	ENSGACG00000019401	tnrc6c2	99	70.000	Gasterosteus_aculeatus
ENSORLG00000003327	tnrc6c2	99	81.103	ENSHBUG00000018310	tnrc6c2	99	81.213	Haplochromis_burtoni
ENSORLG00000003327	tnrc6c2	99	73.832	ENSHCOG00000017802	tnrc6c2	100	73.579	Hippocampus_comes
ENSORLG00000003327	tnrc6c2	87	53.563	ENSIPUG00000022767	tnrc6c2	100	52.058	Ictalurus_punctatus
ENSORLG00000003327	tnrc6c2	87	82.149	ENSMAMG00000001718	tnrc6c2	100	82.574	Mastacembelus_armatus
ENSORLG00000003327	tnrc6c2	99	81.360	ENSMZEG00005023905	tnrc6c2	99	81.044	Maylandia_zebra
ENSORLG00000003327	tnrc6c2	87	80.929	ENSMALG00000020932	tnrc6c2	100	81.231	Monopterus_albus
ENSORLG00000003327	tnrc6c2	83	86.031	ENSNBRG00000000452	tnrc6c2	57	86.364	Neolamprologus_brichardi
ENSORLG00000003327	tnrc6c2	85	78.984	ENSONIG00000018123	tnrc6c2	100	80.238	Oreochromis_niloticus
ENSORLG00000003327	tnrc6c2	100	99.109	ENSORLG00020010730	tnrc6c2	100	99.109	Oryzias_latipes_hni
ENSORLG00000003327	tnrc6c2	100	98.900	ENSORLG00015009232	tnrc6c2	100	98.900	Oryzias_latipes_hsok
ENSORLG00000003327	tnrc6c2	100	94.575	ENSOMEG00000017952	tnrc6c2	100	94.995	Oryzias_melastigma
ENSORLG00000003327	tnrc6c2	91	75.840	ENSPFOG00000011590	tnrc6c2	99	77.941	Poecilia_formosa
ENSORLG00000003327	tnrc6c2	87	76.358	ENSPLAG00000006992	tnrc6c2	100	78.388	Poecilia_latipinna
ENSORLG00000003327	tnrc6c2	99	79.637	ENSPMEG00000012946	tnrc6c2	99	81.319	Poecilia_mexicana
ENSORLG00000003327	tnrc6c2	87	77.240	ENSPREG00000015823	tnrc6c2	100	77.011	Poecilia_reticulata
ENSORLG00000003327	tnrc6c2	87	82.078	ENSPNYG00000002582	tnrc6c2	100	81.895	Pundamilia_nyererei
ENSORLG00000003327	tnrc6c2	87	56.870	ENSPNAG00000026838	tnrc6c2	100	57.771	Pygocentrus_nattereri
ENSORLG00000003327	tnrc6c2	87	79.709	ENSSMAG00000015145	tnrc6c2	100	80.254	Scophthalmus_maximus
ENSORLG00000003327	tnrc6c2	87	83.496	ENSSDUG00000020741	tnrc6c2	100	84.044	Seriola_dumerili
ENSORLG00000003327	tnrc6c2	87	83.496	ENSSLDG00000002077	tnrc6c2	100	84.044	Seriola_lalandi_dorsalis
ENSORLG00000003327	tnrc6c2	99	83.059	ENSSPAG00000013052	tnrc6c2	100	83.562	Stegastes_partitus
ENSORLG00000003327	tnrc6c2	84	81.469	ENSTNIG00000004178	tnrc6c2	94	82.804	Tetraodon_nigroviridis
ENSORLG00000003327	tnrc6c2	87	77.566	ENSXCOG00000013252	tnrc6c2	100	78.819	Xiphophorus_couchianus
ENSORLG00000003327	tnrc6c2	87	82.213	ENSXMAG00000006739	tnrc6c2	100	83.007	Xiphophorus_maculatus