EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000003420 (Gene tree)
Gene ID: 101174611
Gene Symbol: scaf4b
Alias: -
Full Name: splicing factor%2C arginine/serine-rich 15
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 29887 bases
Position: chr13:7937993-7967879
Accession: 101174611
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000004250	RRM_1	PF00076.22	1.3e-06	1	1
ENSORLP00000038320	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000030580	-	2789	-	ENSORLP00000038320	765 (aa)	-	-
ENSORLT00000004251	-	2752	XM_011482333	ENSORLP00000004250	735 (aa)	XP_011480635	H2LE82

Gene Model

Click here to download ENSORLG00000003420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003420's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003420	scaf4b	67	58.650	ENSG00000156304	SCAF4	53	57.480	Homo_sapiens
ENSORLG00000003420	scaf4b	100	66.182	ENSAPOG00000019615	scaf4b	100	68.296	Acanthochromis_polyacanthus
ENSORLG00000003420	scaf4b	100	70.106	ENSAOCG00000010433	scaf4b	100	69.272	Amphiprion_ocellaris
ENSORLG00000003420	scaf4b	100	70.238	ENSAPEG00000010913	scaf4b	100	69.404	Amphiprion_percula
ENSORLG00000003420	scaf4b	98	65.818	ENSATEG00000011758	scaf4b	100	65.013	Anabas_testudineus
ENSORLG00000003420	scaf4b	59	64.444	ENSACAG00000002569	SCAF4	51	54.737	Anolis_carolinensis
ENSORLG00000003420	scaf4b	67	58.650	ENSANAG00000037494	SCAF4	52	57.480	Aotus_nancymaae
ENSORLG00000003420	scaf4b	100	64.675	ENSACLG00000024833	scaf4b	100	64.675	Astatotilapia_calliptera
ENSORLG00000003420	scaf4b	70	57.455	ENSAMXG00000008585	scaf4a	66	58.545	Astyanax_mexicanus
ENSORLG00000003420	scaf4b	67	59.072	ENSBTAG00000018855	SCAF4	52	57.198	Bos_taurus
ENSORLG00000003420	scaf4b	67	58.650	ENSCJAG00000008993	SCAF4	73	57.480	Callithrix_jacchus
ENSORLG00000003420	scaf4b	62	64.789	ENSCAFG00020026019	SCAF4	57	62.637	Canis_lupus_dingo
ENSORLG00000003420	scaf4b	67	59.072	ENSCHIG00000008385	SCAF4	52	57.874	Capra_hircus
ENSORLG00000003420	scaf4b	65	58.650	ENSTSYG00000011344	SCAF4	56	57.480	Carlito_syrichta
ENSORLG00000003420	scaf4b	73	43.684	ENSCPOG00000030311	-	53	40.752	Cavia_porcellus
ENSORLG00000003420	scaf4b	67	58.650	ENSCCAG00000033727	SCAF4	50	61.883	Cebus_capucinus
ENSORLG00000003420	scaf4b	67	58.650	ENSCATG00000030379	SCAF4	64	50.162	Cercocebus_atys
ENSORLG00000003420	scaf4b	67	58.650	ENSCSAG00000009438	SCAF4	51	57.480	Chlorocebus_sabaeus
ENSORLG00000003420	scaf4b	67	58.650	ENSCANG00000029847	SCAF4	52	57.480	Colobus_angolensis_palliatus
ENSORLG00000003420	scaf4b	100	57.667	ENSCSEG00000012808	-	99	58.421	Cynoglossus_semilaevis
ENSORLG00000003420	scaf4b	100	63.228	ENSCVAG00000009142	scaf4b	100	63.228	Cyprinodon_variegatus
ENSORLG00000003420	scaf4b	99	42.021	ENSDARG00000077093	scaf4a	69	56.107	Danio_rerio
ENSORLG00000003420	scaf4b	58	62.286	ENSDARG00000018854	scaf4b	73	56.690	Danio_rerio
ENSORLG00000003420	scaf4b	66	59.072	ENSEASG00005007756	SCAF4	52	57.874	Equus_asinus_asinus
ENSORLG00000003420	scaf4b	66	59.072	ENSECAG00000014248	SCAF4	52	57.874	Equus_caballus
ENSORLG00000003420	scaf4b	100	65.079	ENSFHEG00000007634	scaf4b	100	65.563	Fundulus_heteroclitus
ENSORLG00000003420	scaf4b	57	66.071	ENSGMOG00000015188	scaf4a	58	55.947	Gadus_morhua
ENSORLG00000003420	scaf4b	56	72.662	ENSGACG00000020580	scaf4a	53	53.929	Gasterosteus_aculeatus
ENSORLG00000003420	scaf4b	57	73.248	ENSGGOG00000015557	SCAF4	60	54.737	Gorilla_gorilla
ENSORLG00000003420	scaf4b	53	80.000	ENSIPUG00000011285	scaf4	52	60.944	Ictalurus_punctatus
ENSORLG00000003420	scaf4b	100	68.857	ENSKMAG00000005742	scaf4b	100	67.237	Kryptolebias_marmoratus
ENSORLG00000003420	scaf4b	69	51.737	ENSLBEG00000014675	scaf4a	66	51.751	Labrus_bergylta
ENSORLG00000003420	scaf4b	67	58.650	ENSMFAG00000037668	SCAF4	64	50.162	Macaca_fascicularis
ENSORLG00000003420	scaf4b	67	58.650	ENSMMUG00000001712	SCAF4	51	57.480	Macaca_mulatta
ENSORLG00000003420	scaf4b	67	58.650	ENSMNEG00000032966	SCAF4	64	50.162	Macaca_nemestrina
ENSORLG00000003420	scaf4b	65	58.650	ENSMLEG00000039674	SCAF4	51	57.480	Mandrillus_leucophaeus
ENSORLG00000003420	scaf4b	59	70.482	ENSMODG00000021040	SCAF4	55	57.255	Monodelphis_domestica
ENSORLG00000003420	scaf4b	53	70.922	ENSMALG00000013825	scaf4a	73	52.174	Monopterus_albus
ENSORLG00000003420	scaf4b	67	58.650	ENSNLEG00000003569	SCAF4	52	57.480	Nomascus_leucogenys
ENSORLG00000003420	scaf4b	72	58.176	ENSONIG00000005610	scaf4b	74	91.875	Oreochromis_niloticus
ENSORLG00000003420	scaf4b	57	71.918	ENSONIG00000004687	scaf4a	52	56.452	Oreochromis_niloticus
ENSORLG00000003420	scaf4b	100	98.234	ENSORLG00020013853	scaf4b	100	98.234	Oryzias_latipes_hni
ENSORLG00000003420	scaf4b	65	59.072	ENSOARG00000013894	SCAF4	51	57.874	Ovis_aries
ENSORLG00000003420	scaf4b	66	58.650	ENSPPAG00000028535	SCAF4	52	57.480	Pan_paniscus
ENSORLG00000003420	scaf4b	66	58.650	ENSPTRG00000013848	SCAF4	52	57.480	Pan_troglodytes
ENSORLG00000003420	scaf4b	67	58.650	ENSPANG00000017332	SCAF4	52	57.480	Papio_anubis
ENSORLG00000003420	scaf4b	53	78.417	ENSPKIG00000022408	scaf4a	70	58.850	Paramormyrops_kingsleyae
ENSORLG00000003420	scaf4b	64	54.680	ENSPKIG00000021212	SCAF8	62	44.013	Paramormyrops_kingsleyae
ENSORLG00000003420	scaf4b	99	42.490	ENSPMGG00000016741	scaf4a	78	41.911	Periophthalmus_magnuspinnatus
ENSORLG00000003420	scaf4b	58	57.857	ENSPMAG00000006192	SCAF8	67	56.329	Petromyzon_marinus
ENSORLG00000003420	scaf4b	69	55.906	ENSPCIG00000028183	SCAF4	51	57.255	Phascolarctos_cinereus
ENSORLG00000003420	scaf4b	56	74.638	ENSPFOG00000017156	scaf4a	57	55.556	Poecilia_formosa
ENSORLG00000003420	scaf4b	81	71.371	ENSPFOG00000003261	scaf4b	65	71.429	Poecilia_formosa
ENSORLG00000003420	scaf4b	100	61.118	ENSPLAG00000004403	-	100	59.873	Poecilia_latipinna
ENSORLG00000003420	scaf4b	100	61.168	ENSPMEG00000006666	-	100	59.796	Poecilia_mexicana
ENSORLG00000003420	scaf4b	100	60.787	ENSPREG00000013510	scaf4b	100	60.076	Poecilia_reticulata
ENSORLG00000003420	scaf4b	67	58.650	ENSPPYG00000011355	SCAF4	52	57.480	Pongo_abelii
ENSORLG00000003420	scaf4b	67	59.916	ENSPVAG00000005220	SCAF4	52	58.661	Pteropus_vampyrus
ENSORLG00000003420	scaf4b	100	64.675	ENSPNYG00000010526	scaf4b	100	64.675	Pundamilia_nyererei
ENSORLG00000003420	scaf4b	67	78.676	ENSPNAG00000015199	-	51	78.676	Pygocentrus_nattereri
ENSORLG00000003420	scaf4b	71	51.864	ENSPNAG00000016892	scaf4a	68	56.383	Pygocentrus_nattereri
ENSORLG00000003420	scaf4b	64	61.538	ENSRNOG00000002104	Scaf4	65	54.167	Rattus_norvegicus
ENSORLG00000003420	scaf4b	65	57.143	ENSRBIG00000040007	SCAF4	51	57.438	Rhinopithecus_bieti
ENSORLG00000003420	scaf4b	67	58.650	ENSRROG00000029488	SCAF4	52	57.480	Rhinopithecus_roxellana
ENSORLG00000003420	scaf4b	70	55.906	ENSSHAG00000001581	SCAF4	59	53.497	Sarcophilus_harrisii
ENSORLG00000003420	scaf4b	100	66.972	ENSSMAG00000003738	scaf4b	100	65.269	Scophthalmus_maximus
ENSORLG00000003420	scaf4b	100	64.829	ENSSDUG00000012380	scaf4b	100	65.354	Seriola_dumerili
ENSORLG00000003420	scaf4b	100	64.698	ENSSLDG00000023152	-	100	65.223	Seriola_lalandi_dorsalis
ENSORLG00000003420	scaf4b	100	57.661	ENSTRUG00000009536	-	100	56.225	Takifugu_rubripes