EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000003429 (Gene tree)
Gene ID: 101174850
Gene Symbol: urb1
Alias: -
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 19403 bases
Position: chr13:7967956-7987358
Accession: 101174850
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000004262	Npa1	PF11707.8	2.5e-81	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000004263	-	9419	XM_023961686	ENSORLP00000004262	2245 (aa)	XP_023817454	H2LE93

Gene Model

Click here to download ENSORLG00000003429's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003429's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003429	urb1	99	43.582	ENSG00000142207	URB1	99	43.482	Homo_sapiens
ENSORLG00000003429	urb1	99	67.374	ENSAPOG00000020308	urb1	99	67.374	Acanthochromis_polyacanthus
ENSORLG00000003429	urb1	99	44.148	ENSAMEG00000011998	URB1	99	44.173	Ailuropoda_melanoleuca
ENSORLG00000003429	urb1	95	65.488	ENSACIG00000003248	urb1	97	65.488	Amphilophus_citrinellus
ENSORLG00000003429	urb1	99	62.919	ENSAOCG00000010364	urb1	99	62.919	Amphiprion_ocellaris
ENSORLG00000003429	urb1	97	74.200	ENSAPEG00000010758	urb1	99	74.200	Amphiprion_percula
ENSORLG00000003429	urb1	99	67.899	ENSATEG00000011790	urb1	99	67.899	Anabas_testudineus
ENSORLG00000003429	urb1	97	45.286	ENSAPLG00000012791	URB1	99	45.401	Anas_platyrhynchos
ENSORLG00000003429	urb1	100	43.554	ENSACAG00000002817	URB1	99	43.641	Anolis_carolinensis
ENSORLG00000003429	urb1	99	43.524	ENSANAG00000024617	URB1	99	43.482	Aotus_nancymaae
ENSORLG00000003429	urb1	99	68.819	ENSACLG00000024865	urb1	99	68.819	Astatotilapia_calliptera
ENSORLG00000003429	urb1	99	47.991	ENSAMXG00000012306	urb1	99	47.510	Astyanax_mexicanus
ENSORLG00000003429	urb1	99	43.446	ENSBTAG00000012412	URB1	99	43.534	Bos_taurus
ENSORLG00000003429	urb1	99	43.082	ENSCJAG00000009118	URB1	99	43.043	Callithrix_jacchus
ENSORLG00000003429	urb1	99	43.200	ENSCAFG00000008892	URB1	99	43.200	Canis_familiaris
ENSORLG00000003429	urb1	99	42.563	ENSCAFG00020025994	-	99	42.563	Canis_lupus_dingo
ENSORLG00000003429	urb1	99	42.945	ENSCAFG00020025987	-	99	42.945	Canis_lupus_dingo
ENSORLG00000003429	urb1	99	43.114	ENSCHIG00000015645	URB1	99	43.114	Capra_hircus
ENSORLG00000003429	urb1	99	43.450	ENSTSYG00000013286	URB1	99	43.450	Carlito_syrichta
ENSORLG00000003429	urb1	98	43.131	ENSCAPG00000015589	URB1	99	43.131	Cavia_aperea
ENSORLG00000003429	urb1	99	43.657	ENSCPOG00000006748	URB1	99	43.657	Cavia_porcellus
ENSORLG00000003429	urb1	99	43.436	ENSCCAG00000021299	URB1	99	43.482	Cebus_capucinus
ENSORLG00000003429	urb1	99	44.030	ENSCATG00000042630	URB1	99	44.052	Cercocebus_atys
ENSORLG00000003429	urb1	99	44.391	ENSCLAG00000005262	URB1	99	44.372	Chinchilla_lanigera
ENSORLG00000003429	urb1	99	43.220	ENSCSAG00000009584	URB1	99	43.248	Chlorocebus_sabaeus
ENSORLG00000003429	urb1	99	46.120	ENSCPBG00000006454	URB1	99	46.231	Chrysemys_picta_bellii
ENSORLG00000003429	urb1	99	43.912	ENSCANG00000031088	URB1	99	43.935	Colobus_angolensis_palliatus
ENSORLG00000003429	urb1	99	43.153	ENSCGRG00001010616	Urb1	99	43.019	Cricetulus_griseus_chok1gshd
ENSORLG00000003429	urb1	98	43.308	ENSCGRG00000015840	Urb1	99	43.308	Cricetulus_griseus_crigri
ENSORLG00000003429	urb1	99	62.004	ENSCSEG00000012616	urb1	99	62.004	Cynoglossus_semilaevis
ENSORLG00000003429	urb1	92	73.349	ENSCVAG00000009076	urb1	99	73.349	Cyprinodon_variegatus
ENSORLG00000003429	urb1	99	52.226	ENSDARG00000060308	urb1	99	52.490	Danio_rerio
ENSORLG00000003429	urb1	85	46.629	ENSDNOG00000015586	URB1	99	46.629	Dasypus_novemcinctus
ENSORLG00000003429	urb1	99	43.610	ENSDORG00000006735	Urb1	99	43.610	Dipodomys_ordii
ENSORLG00000003429	urb1	91	52.602	ENSETEG00000009080	URB1	84	52.602	Echinops_telfairi
ENSORLG00000003429	urb1	99	43.518	ENSEASG00005007711	URB1	99	45.146	Equus_asinus_asinus
ENSORLG00000003429	urb1	92	55.302	ENSECAG00000013206	URB1	99	55.302	Equus_caballus
ENSORLG00000003429	urb1	99	55.404	ENSELUG00000020516	urb1	99	55.512	Esox_lucius
ENSORLG00000003429	urb1	99	43.644	ENSFCAG00000002177	URB1	99	43.644	Felis_catus
ENSORLG00000003429	urb1	98	41.327	ENSFALG00000004636	URB1	99	41.221	Ficedula_albicollis
ENSORLG00000003429	urb1	99	43.689	ENSFDAG00000007288	URB1	95	43.594	Fukomys_damarensis
ENSORLG00000003429	urb1	99	64.283	ENSFHEG00000000202	urb1	99	67.494	Fundulus_heteroclitus
ENSORLG00000003429	urb1	93	57.218	ENSGMOG00000001838	urb1	94	57.218	Gadus_morhua
ENSORLG00000003429	urb1	99	45.426	ENSGALG00000015887	URB1	98	45.603	Gallus_gallus
ENSORLG00000003429	urb1	95	69.872	ENSGAFG00000020694	urb1	99	69.872	Gambusia_affinis
ENSORLG00000003429	urb1	99	67.794	ENSGACG00000011703	urb1	99	67.794	Gasterosteus_aculeatus
ENSORLG00000003429	urb1	99	45.839	ENSGAGG00000022544	URB1	99	45.839	Gopherus_agassizii
ENSORLG00000003429	urb1	99	43.563	ENSGGOG00000000285	URB1	99	43.482	Gorilla_gorilla
ENSORLG00000003429	urb1	99	68.819	ENSHBUG00000001904	urb1	99	68.819	Haplochromis_burtoni
ENSORLG00000003429	urb1	99	42.685	ENSHGLG00000004907	URB1	99	42.771	Heterocephalus_glaber_female
ENSORLG00000003429	urb1	99	43.069	ENSHGLG00100010749	URB1	99	43.156	Heterocephalus_glaber_male
ENSORLG00000003429	urb1	73	62.941	ENSHCOG00000018683	urb1	98	70.787	Hippocampus_comes
ENSORLG00000003429	urb1	99	47.299	ENSIPUG00000014721	urb1	99	47.299	Ictalurus_punctatus
ENSORLG00000003429	urb1	99	43.670	ENSSTOG00000004539	URB1	99	43.518	Ictidomys_tridecemlineatus
ENSORLG00000003429	urb1	91	75.240	ENSKMAG00000006001	urb1	99	74.920	Kryptolebias_marmoratus
ENSORLG00000003429	urb1	94	71.535	ENSLBEG00000027208	urb1	99	71.535	Labrus_bergylta
ENSORLG00000003429	urb1	99	42.741	ENSLACG00000017059	URB1	100	42.741	Latimeria_chalumnae
ENSORLG00000003429	urb1	99	50.698	ENSLOCG00000009190	urb1	99	50.698	Lepisosteus_oculatus
ENSORLG00000003429	urb1	99	44.004	ENSLAFG00000010407	URB1	99	44.004	Loxodonta_africana
ENSORLG00000003429	urb1	99	43.926	ENSMFAG00000034391	URB1	96	43.949	Macaca_fascicularis
ENSORLG00000003429	urb1	99	43.868	ENSMMUG00000010295	URB1	99	43.892	Macaca_mulatta
ENSORLG00000003429	urb1	99	43.354	ENSMNEG00000032981	URB1	99	43.144	Macaca_nemestrina
ENSORLG00000003429	urb1	99	44.044	ENSMLEG00000041435	URB1	99	44.066	Mandrillus_leucophaeus
ENSORLG00000003429	urb1	100	64.342	ENSMAMG00000011238	urb1	99	64.342	Mastacembelus_armatus
ENSORLG00000003429	urb1	99	64.584	ENSMZEG00005011862	urb1	99	64.584	Maylandia_zebra
ENSORLG00000003429	urb1	97	45.222	ENSMGAG00000014512	URB1	99	45.357	Meleagris_gallopavo
ENSORLG00000003429	urb1	92	51.355	ENSMAUG00000010516	Urb1	99	51.029	Mesocricetus_auratus
ENSORLG00000003429	urb1	99	43.900	ENSMICG00000016424	URB1	99	43.682	Microcebus_murinus
ENSORLG00000003429	urb1	99	43.214	ENSMOCG00000012613	Urb1	99	43.345	Microtus_ochrogaster
ENSORLG00000003429	urb1	99	43.556	ENSMODG00000021076	URB1	99	43.556	Monodelphis_domestica
ENSORLG00000003429	urb1	99	63.681	ENSMALG00000017411	urb1	99	63.636	Monopterus_albus
ENSORLG00000003429	urb1	99	43.165	MGP_CAROLIEiJ_G0020948	Urb1	99	43.165	Mus_caroli
ENSORLG00000003429	urb1	99	43.014	ENSMUSG00000039929	Urb1	99	43.014	Mus_musculus
ENSORLG00000003429	urb1	99	42.952	MGP_PahariEiJ_G0016653	Urb1	98	42.952	Mus_pahari
ENSORLG00000003429	urb1	99	43.045	MGP_SPRETEiJ_G0021854	Urb1	99	43.102	Mus_spretus
ENSORLG00000003429	urb1	99	43.408	ENSMPUG00000001123	URB1	99	43.520	Mustela_putorius_furo
ENSORLG00000003429	urb1	99	42.433	ENSNGAG00000001905	Urb1	99	42.433	Nannospalax_galili
ENSORLG00000003429	urb1	82	65.994	ENSNBRG00000001049	urb1	99	65.811	Neolamprologus_brichardi
ENSORLG00000003429	urb1	99	42.296	ENSNLEG00000026872	URB1	99	42.338	Nomascus_leucogenys
ENSORLG00000003429	urb1	93	50.484	ENSMEUG00000010828	URB1	93	50.095	Notamacropus_eugenii
ENSORLG00000003429	urb1	98	43.326	ENSOPRG00000013482	URB1	98	43.326	Ochotona_princeps
ENSORLG00000003429	urb1	99	43.909	ENSODEG00000002587	URB1	99	43.884	Octodon_degus
ENSORLG00000003429	urb1	99	69.013	ENSONIG00000005599	urb1	99	69.013	Oreochromis_niloticus
ENSORLG00000003429	urb1	99	44.624	ENSOCUG00000009381	URB1	99	44.624	Oryctolagus_cuniculus
ENSORLG00000003429	urb1	100	97.998	ENSORLG00020013785	urb1	100	98.007	Oryzias_latipes_hni
ENSORLG00000003429	urb1	100	91.789	ENSORLG00015019421	urb1	99	98.343	Oryzias_latipes_hsok
ENSORLG00000003429	urb1	80	84.848	ENSOMEG00000002094	urb1	99	84.848	Oryzias_melastigma
ENSORLG00000003429	urb1	99	43.734	ENSOGAG00000017140	URB1	99	43.734	Otolemur_garnettii
ENSORLG00000003429	urb1	95	49.075	ENSOARG00000013679	URB1	98	48.742	Ovis_aries
ENSORLG00000003429	urb1	99	43.563	ENSPPAG00000003423	URB1	99	43.482	Pan_paniscus
ENSORLG00000003429	urb1	99	43.695	ENSPPRG00000023131	URB1	99	43.695	Panthera_pardus
ENSORLG00000003429	urb1	87	45.153	ENSPTIG00000016125	URB1	93	45.153	Panthera_tigris_altaica
ENSORLG00000003429	urb1	99	43.474	ENSPTRG00000013852	URB1	99	43.395	Pan_troglodytes
ENSORLG00000003429	urb1	99	43.956	ENSPANG00000021964	URB1	99	43.979	Papio_anubis
ENSORLG00000003429	urb1	99	52.103	ENSPKIG00000003683	urb1	99	52.343	Paramormyrops_kingsleyae
ENSORLG00000003429	urb1	99	43.444	ENSPEMG00000021205	Urb1	98	43.425	Peromyscus_maniculatus_bairdii
ENSORLG00000003429	urb1	77	32.256	ENSPMAG00000009733	URB1	99	33.078	Petromyzon_marinus
ENSORLG00000003429	urb1	99	42.625	ENSPCIG00000016350	URB1	99	43.018	Phascolarctos_cinereus
ENSORLG00000003429	urb1	97	67.841	ENSPLAG00000004371	urb1	99	67.704	Poecilia_latipinna
ENSORLG00000003429	urb1	99	68.262	ENSPMEG00000006634	urb1	99	68.262	Poecilia_mexicana
ENSORLG00000003429	urb1	99	67.553	ENSPREG00000013453	urb1	99	67.553	Poecilia_reticulata
ENSORLG00000003429	urb1	99	43.495	ENSPPYG00000011359	URB1	99	43.476	Pongo_abelii
ENSORLG00000003429	urb1	99	39.545	ENSPCAG00000007430	URB1	99	39.589	Procavia_capensis
ENSORLG00000003429	urb1	99	44.177	ENSPCOG00000022695	URB1	99	44.226	Propithecus_coquereli
ENSORLG00000003429	urb1	99	43.188	ENSPVAG00000000889	URB1	99	43.188	Pteropus_vampyrus
ENSORLG00000003429	urb1	99	65.487	ENSPNYG00000010589	urb1	99	65.487	Pundamilia_nyererei
ENSORLG00000003429	urb1	99	48.555	ENSPNAG00000019324	urb1	99	48.464	Pygocentrus_nattereri
ENSORLG00000003429	urb1	99	42.658	ENSRNOG00000002080	Urb1	99	42.807	Rattus_norvegicus
ENSORLG00000003429	urb1	99	43.981	ENSRBIG00000033122	URB1	99	44.003	Rhinopithecus_bieti
ENSORLG00000003429	urb1	99	43.882	ENSRROG00000040237	URB1	99	43.892	Rhinopithecus_roxellana
ENSORLG00000003429	urb1	99	43.329	ENSSBOG00000027672	URB1	99	43.289	Saimiri_boliviensis_boliviensis
ENSORLG00000003429	urb1	99	42.957	ENSSHAG00000005140	URB1	99	43.001	Sarcophilus_harrisii
ENSORLG00000003429	urb1	93	54.382	ENSSFOG00015000339	urb1	99	54.459	Scleropages_formosus
ENSORLG00000003429	urb1	99	69.373	ENSSMAG00000003782	urb1	99	69.329	Scophthalmus_maximus
ENSORLG00000003429	urb1	99	71.239	ENSSDUG00000012313	urb1	99	71.239	Seriola_dumerili
ENSORLG00000003429	urb1	99	71.106	ENSSLDG00000023179	urb1	99	71.106	Seriola_lalandi_dorsalis
ENSORLG00000003429	urb1	99	45.009	ENSSPUG00000012447	URB1	99	45.009	Sphenodon_punctatus
ENSORLG00000003429	urb1	100	69.947	ENSSPAG00000006325	urb1	100	69.947	Stegastes_partitus
ENSORLG00000003429	urb1	99	43.217	ENSSSCG00000032024	URB1	99	43.261	Sus_scrofa
ENSORLG00000003429	urb1	74	47.181	ENSTGUG00000013442	URB1	100	46.975	Taeniopygia_guttata
ENSORLG00000003429	urb1	99	62.600	ENSTRUG00000009372	urb1	99	62.600	Takifugu_rubripes
ENSORLG00000003429	urb1	99	60.535	ENSTNIG00000016277	urb1	99	60.535	Tetraodon_nigroviridis
ENSORLG00000003429	urb1	67	47.701	ENSTBEG00000010044	URB1	67	47.701	Tupaia_belangeri
ENSORLG00000003429	urb1	90	50.729	ENSTTRG00000007712	URB1	91	50.729	Tursiops_truncatus
ENSORLG00000003429	urb1	99	43.619	ENSUAMG00000012231	URB1	99	43.644	Ursus_americanus
ENSORLG00000003429	urb1	83	56.159	ENSUMAG00000017419	URB1	96	45.455	Ursus_maritimus
ENSORLG00000003429	urb1	70	59.722	ENSVPAG00000001164	URB1	70	59.722	Vicugna_pacos
ENSORLG00000003429	urb1	99	43.531	ENSVVUG00000000551	URB1	99	43.531	Vulpes_vulpes
ENSORLG00000003429	urb1	99	44.244	ENSXETG00000009895	urb1	99	43.939	Xenopus_tropicalis
ENSORLG00000003429	urb1	99	63.515	ENSXCOG00000005500	urb1	99	66.719	Xiphophorus_couchianus
ENSORLG00000003429	urb1	99	63.769	ENSXMAG00000007253	urb1	99	66.649	Xiphophorus_maculatus