EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSORLG00000003530 (Gene tree)
Gene ID: -
Gene Symbol: srsf6a
Alias: -
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 6783 bases
Position: chr7:7379974-7386756
Accession: 101162527
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000004399	RRM_1	PF00076.22	2.8e-31	1	2
ENSORLP00000004399	RRM_1	PF00076.22	2.8e-31	2	2
ENSORLP00000041336	RRM_1	PF00076.22	4e-06	1	1
ENSORLP00000044573	RRM_1	PF00076.22	4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000028781	-	3589	-	ENSORLP00000044573	234 (aa)	-	-
ENSORLT00000046388	-	4245	-	ENSORLP00000041336	234 (aa)	-	-
ENSORLT00000004400	-	993	XM_004070338	ENSORLP00000004399	330 (aa)	XP_004070386	H2LEM4

Gene Model

Click here to download ENSORLG00000003530's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003530's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003530	srsf6a	71	60.606	ENSACIG00000020091	-	95	70.079	Amphilophus_citrinellus
ENSORLG00000003530	srsf6a	93	63.772	ENSACIG00000023658	-	56	79.006	Amphilophus_citrinellus
ENSORLG00000003530	srsf6a	58	48.148	ENSAPEG00000020746	-	65	73.913	Amphiprion_percula
ENSORLG00000003530	srsf6a	65	63.223	ENSELUG00000013506	SRSF6	56	88.889	Esox_lucius
ENSORLG00000003530	srsf6a	95	62.170	ENSFHEG00000023065	srsf6a	55	79.348	Fundulus_heteroclitus
ENSORLG00000003530	srsf6a	94	60.574	ENSGACG00000006084	srsf6a	58	79.775	Gasterosteus_aculeatus
ENSORLG00000003530	srsf6a	58	70.175	ENSHBUG00000006386	-	57	77.654	Haplochromis_burtoni
ENSORLG00000003530	srsf6a	53	98.148	ENSKMAG00000011934	srsf6a	100	74.667	Kryptolebias_marmoratus
ENSORLG00000003530	srsf6a	93	68.657	ENSLBEG00000007356	srsf6a	100	69.916	Labrus_bergylta
ENSORLG00000003530	srsf6a	81	57.068	ENSLACG00000005466	SRSF6	54	77.596	Latimeria_chalumnae
ENSORLG00000003530	srsf6a	92	57.674	ENSMAMG00000017161	srsf6a	75	80.000	Mastacembelus_armatus
ENSORLG00000003530	srsf6a	85	77.333	ENSMALG00000003702	srsf6a	100	77.333	Monopterus_albus
ENSORLG00000003530	srsf6a	100	100.000	ENSORLG00015009410	srsf6a	100	100.000	Oryzias_latipes_hsok
ENSORLG00000003530	srsf6a	92	70.482	ENSPKIG00000018463	-	62	90.476	Paramormyrops_kingsleyae
ENSORLG00000003530	srsf6a	95	67.257	ENSPMGG00000014963	srsf6a	56	80.000	Periophthalmus_magnuspinnatus
ENSORLG00000003530	srsf6a	92	94.444	ENSPFOG00000006437	srsf6a	50	76.963	Poecilia_formosa
ENSORLG00000003530	srsf6a	92	66.055	ENSPNYG00000011272	-	85	67.431	Pundamilia_nyererei
ENSORLG00000003530	srsf6a	64	74.000	ENSSFOG00015015169	SRSF6	60	79.348	Scleropages_formosus
ENSORLG00000003530	srsf6a	92	57.209	ENSSPAG00000002362	srsf6a	86	76.923	Stegastes_partitus
ENSORLG00000003530	srsf6a	93	61.905	ENSTNIG00000001692	srsf6a	57	77.540	Tetraodon_nigroviridis