EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSORLG00000003540 (Gene tree)
Gene ID: 101169884
Gene Symbol: fubp1
Alias: -
Full Name: far upstream element binding protein 1
Gene Type: protein_coding
Species: Oryzias_latipes
Status: putative
Strand: Minus strand
Length: 6362 bases
Position: chr17:4258801-4265162
Accession: 101169884
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSORLP00000004413	KH_1	PF00013.29	1.5e-68	1	4
ENSORLP00000004413	KH_1	PF00013.29	1.5e-68	2	4
ENSORLP00000004413	KH_1	PF00013.29	1.5e-68	3	4
ENSORLP00000004413	KH_1	PF00013.29	1.5e-68	4	4
ENSORLP00000004413	KH_2	PF07650.17	5.9e-21	1	2
ENSORLP00000004413	KH_2	PF07650.17	5.9e-21	2	2
ENSORLP00000004413	DUF1897	PF09005.10	7.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSORLT00000004414	-	1836	XM_004078604	ENSORLP00000004413	611 (aa)	XP_004078652	H2LEN7

Gene Model

Click here to download ENSORLG00000003540's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSORLG00000003540's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSORLG00000003540	fubp1	61	40.580	ENSORLG00000012872	pcbp2	89	40.580
ENSORLG00000003540	fubp1	53	36.842	ENSORLG00000003061	pcbp4	51	32.432
ENSORLG00000003540	fubp1	53	39.474	ENSORLG00000014385	-	51	39.474
ENSORLG00000003540	fubp1	58	39.394	ENSORLG00000022739	-	69	38.961
ENSORLG00000003540	fubp1	61	42.029	ENSORLG00000005176	PCBP2	71	42.029
ENSORLG00000003540	fubp1	68	57.981	ENSORLG00000017565	-	78	58.275
ENSORLG00000003540	fubp1	57	40.580	ENSORLG00000000059	pcbp3	69	40.580
ENSORLG00000003540	fubp1	99	48.382	ENSORLG00000007103	fubp3	97	47.525

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSORLG00000003540	fubp1	71	77.704	ENSG00000162613	FUBP1	99	68.896	Homo_sapiens
ENSORLG00000003540	fubp1	99	87.580	ENSAPOG00000014845	fubp1	98	84.483	Acanthochromis_polyacanthus
ENSORLG00000003540	fubp1	71	74.004	ENSAMEG00000007372	FUBP1	99	66.667	Ailuropoda_melanoleuca
ENSORLG00000003540	fubp1	99	84.444	ENSACIG00000020024	fubp1	99	85.144	Amphilophus_citrinellus
ENSORLG00000003540	fubp1	99	91.013	ENSAPEG00000012232	fubp1	99	91.503	Amphiprion_percula
ENSORLG00000003540	fubp1	99	89.871	ENSATEG00000018619	fubp1	99	89.314	Anabas_testudineus
ENSORLG00000003540	fubp1	71	73.573	ENSACAG00000006310	FUBP1	97	62.811	Anolis_carolinensis
ENSORLG00000003540	fubp1	99	91.928	ENSACLG00000006708	fubp1	99	92.257	Astatotilapia_calliptera
ENSORLG00000003540	fubp1	86	81.086	ENSAMXG00000005525	fubp1	100	82.927	Astyanax_mexicanus
ENSORLG00000003540	fubp1	71	77.925	ENSCJAG00000007062	FUBP1	99	69.159	Callithrix_jacchus
ENSORLG00000003540	fubp1	71	77.753	ENSCAFG00000020361	FUBP1	99	69.051	Canis_familiaris
ENSORLG00000003540	fubp1	66	79.562	ENSTSYG00000000148	FUBP1	99	67.496	Carlito_syrichta
ENSORLG00000003540	fubp1	57	82.213	ENSCAPG00000011052	-	65	82.213	Cavia_aperea
ENSORLG00000003540	fubp1	71	77.753	ENSCPOG00000002757	FUBP1	98	69.350	Cavia_porcellus
ENSORLG00000003540	fubp1	71	64.348	ENSCCAG00000036537	FUBP1	99	64.928	Cebus_capucinus
ENSORLG00000003540	fubp1	71	77.533	ENSCATG00000042126	FUBP1	99	68.896	Cercocebus_atys
ENSORLG00000003540	fubp1	71	77.753	ENSCLAG00000005621	FUBP1	99	68.896	Chinchilla_lanigera
ENSORLG00000003540	fubp1	71	77.533	ENSCSAG00000001402	FUBP1	99	68.896	Chlorocebus_sabaeus
ENSORLG00000003540	fubp1	71	77.533	ENSCHOG00000008177	FUBP1	98	67.496	Choloepus_hoffmanni
ENSORLG00000003540	fubp1	71	79.018	ENSCGRG00001007103	Fubp1	99	68.643	Cricetulus_griseus_chok1gshd
ENSORLG00000003540	fubp1	66	79.227	ENSCGRG00000003372	Fubp1	99	68.152	Cricetulus_griseus_crigri
ENSORLG00000003540	fubp1	99	87.821	ENSCSEG00000021412	fubp1	98	88.301	Cynoglossus_semilaevis
ENSORLG00000003540	fubp1	99	84.862	ENSCVAG00000014487	fubp1	93	89.541	Cyprinodon_variegatus
ENSORLG00000003540	fubp1	99	77.414	ENSDARG00000029248	fubp1	99	79.751	Danio_rerio
ENSORLG00000003540	fubp1	71	47.865	ENSDNOG00000034565	-	69	49.436	Dasypus_novemcinctus
ENSORLG00000003540	fubp1	71	78.444	ENSDORG00000016534	Fubp1	98	68.896	Dipodomys_ordii
ENSORLG00000003540	fubp1	77	77.193	ENSETEG00000000948	-	53	77.485	Echinops_telfairi
ENSORLG00000003540	fubp1	63	78.125	ENSEBUG00000016143	fubp1	59	84.615	Eptatretus_burgeri
ENSORLG00000003540	fubp1	69	81.081	ENSEEUG00000001287	FUBP1	86	69.620	Erinaceus_europaeus
ENSORLG00000003540	fubp1	99	80.063	ENSELUG00000007990	fubp1	99	75.076	Esox_lucius
ENSORLG00000003540	fubp1	71	77.533	ENSFDAG00000014210	FUBP1	98	68.740	Fukomys_damarensis
ENSORLG00000003540	fubp1	99	88.836	ENSFHEG00000005230	fubp1	99	88.357	Fundulus_heteroclitus
ENSORLG00000003540	fubp1	99	81.775	ENSGMOG00000003370	fubp1	99	82.222	Gadus_morhua
ENSORLG00000003540	fubp1	71	78.540	ENSGALG00000008939	FUBP1	91	77.088	Gallus_gallus
ENSORLG00000003540	fubp1	99	87.461	ENSGAFG00000020972	fubp1	99	86.991	Gambusia_affinis
ENSORLG00000003540	fubp1	99	86.185	ENSGACG00000016563	fubp1	99	87.127	Gasterosteus_aculeatus
ENSORLG00000003540	fubp1	99	86.287	ENSHBUG00000009835	fubp1	99	90.945	Haplochromis_burtoni
ENSORLG00000003540	fubp1	71	77.753	ENSHGLG00000008415	-	99	69.350	Heterocephalus_glaber_female
ENSORLG00000003540	fubp1	71	77.753	ENSHGLG00100003417	-	99	69.350	Heterocephalus_glaber_male
ENSORLG00000003540	fubp1	99	84.759	ENSHCOG00000000910	fubp1	99	86.470	Hippocampus_comes
ENSORLG00000003540	fubp1	99	77.901	ENSIPUG00000009896	fubp1	99	79.173	Ictalurus_punctatus
ENSORLG00000003540	fubp1	71	79.148	ENSSTOG00000014312	FUBP1	99	69.051	Ictidomys_tridecemlineatus
ENSORLG00000003540	fubp1	71	78.652	ENSJJAG00000020069	Fubp1	99	70.078	Jaculus_jaculus
ENSORLG00000003540	fubp1	99	85.420	ENSKMAG00000018897	fubp1	99	85.578	Kryptolebias_marmoratus
ENSORLG00000003540	fubp1	99	83.309	ENSLBEG00000012700	fubp1	97	81.967	Labrus_bergylta
ENSORLG00000003540	fubp1	97	72.508	ENSLOCG00000003745	fubp1	99	71.302	Lepisosteus_oculatus
ENSORLG00000003540	fubp1	71	74.630	ENSLAFG00000003273	FUBP1	99	68.545	Loxodonta_africana
ENSORLG00000003540	fubp1	71	77.704	ENSMFAG00000031825	FUBP1	99	69.003	Macaca_fascicularis
ENSORLG00000003540	fubp1	71	78.924	ENSMMUG00000002899	FUBP1	99	68.896	Macaca_mulatta
ENSORLG00000003540	fubp1	71	77.533	ENSMNEG00000045212	FUBP1	99	68.896	Macaca_nemestrina
ENSORLG00000003540	fubp1	99	84.036	ENSMAMG00000007489	fubp1	99	82.982	Mastacembelus_armatus
ENSORLG00000003540	fubp1	99	89.583	ENSMZEG00005024298	fubp1	99	89.744	Maylandia_zebra
ENSORLG00000003540	fubp1	71	77.974	ENSMAUG00000016428	Fubp1	98	69.505	Mesocricetus_auratus
ENSORLG00000003540	fubp1	71	79.148	ENSMOCG00000014751	Fubp1	99	68.504	Microtus_ochrogaster
ENSORLG00000003540	fubp1	87	88.321	ENSMMOG00000019463	fubp1	99	88.707	Mola_mola
ENSORLG00000003540	fubp1	69	71.461	ENSMODG00000020804	FUBP1	100	62.618	Monodelphis_domestica
ENSORLG00000003540	fubp1	99	89.297	ENSMALG00000015173	fubp1	99	88.978	Monopterus_albus
ENSORLG00000003540	fubp1	71	78.396	MGP_CAROLIEiJ_G0025740	Fubp1	99	73.372	Mus_caroli
ENSORLG00000003540	fubp1	71	78.174	ENSMUSG00000028034	Fubp1	99	73.180	Mus_musculus
ENSORLG00000003540	fubp1	71	78.222	MGP_PahariEiJ_G0027191	Fubp1	99	73.231	Mus_pahari
ENSORLG00000003540	fubp1	71	78.396	MGP_SPRETEiJ_G0026693	Fubp1	99	73.372	Mus_spretus
ENSORLG00000003540	fubp1	71	74.833	ENSNGAG00000014302	Fubp1	99	65.835	Nannospalax_galili
ENSORLG00000003540	fubp1	99	92.092	ENSNBRG00000015099	fubp1	99	92.422	Neolamprologus_brichardi
ENSORLG00000003540	fubp1	71	73.684	ENSNLEG00000009772	FUBP1	99	67.132	Nomascus_leucogenys
ENSORLG00000003540	fubp1	57	82.353	ENSMEUG00000007917	-	60	71.795	Notamacropus_eugenii
ENSORLG00000003540	fubp1	70	86.792	ENSOPRG00000001175	FUBP1	74	69.855	Ochotona_princeps
ENSORLG00000003540	fubp1	99	53.971	ENSODEG00000003657	-	71	57.763	Octodon_degus
ENSORLG00000003540	fubp1	71	77.753	ENSODEG00000002600	-	98	68.896	Octodon_degus
ENSORLG00000003540	fubp1	99	88.906	ENSONIG00000018381	fubp1	100	89.065	Oreochromis_niloticus
ENSORLG00000003540	fubp1	61	79.427	ENSOANG00000009777	FUBP1	99	62.252	Ornithorhynchus_anatinus
ENSORLG00000003540	fubp1	100	97.398	ENSORLG00020005908	fubp1	100	97.398	Oryzias_latipes_hni
ENSORLG00000003540	fubp1	100	95.624	ENSORLG00015008779	fubp1	100	95.624	Oryzias_latipes_hsok
ENSORLG00000003540	fubp1	99	92.569	ENSOMEG00000021943	fubp1	99	92.569	Oryzias_melastigma
ENSORLG00000003540	fubp1	71	73.695	ENSOGAG00000014233	FUBP1	99	64.925	Otolemur_garnettii
ENSORLG00000003540	fubp1	71	77.925	ENSOARG00000013259	FUBP1	99	66.417	Ovis_aries
ENSORLG00000003540	fubp1	71	77.753	ENSPPRG00000000413	FUBP1	99	69.051	Panthera_pardus
ENSORLG00000003540	fubp1	71	77.753	ENSPTIG00000019450	FUBP1	99	69.051	Panthera_tigris_altaica
ENSORLG00000003540	fubp1	99	81.300	ENSPMGG00000009060	fubp1	71	86.848	Periophthalmus_magnuspinnatus
ENSORLG00000003540	fubp1	71	78.396	ENSPEMG00000021802	Fubp1	98	68.331	Peromyscus_maniculatus_bairdii
ENSORLG00000003540	fubp1	64	58.952	ENSPMAG00000001644	-	93	58.079	Petromyzon_marinus
ENSORLG00000003540	fubp1	99	85.429	ENSPFOG00000000238	fubp1	99	84.049	Poecilia_formosa
ENSORLG00000003540	fubp1	99	91.475	ENSPLAG00000021170	fubp1	99	91.475	Poecilia_latipinna
ENSORLG00000003540	fubp1	99	88.387	ENSPMEG00000004747	fubp1	100	88.000	Poecilia_mexicana
ENSORLG00000003540	fubp1	99	89.348	ENSPREG00000017911	fubp1	99	89.077	Poecilia_reticulata
ENSORLG00000003540	fubp1	73	77.155	ENSPPYG00000001219	-	68	78.271	Pongo_abelii
ENSORLG00000003540	fubp1	71	77.704	ENSPCAG00000012617	FUBP1	98	67.445	Procavia_capensis
ENSORLG00000003540	fubp1	71	78.619	ENSPCOG00000024974	FUBP1	99	69.051	Propithecus_coquereli
ENSORLG00000003540	fubp1	71	71.806	ENSPVAG00000014637	FUBP1	98	64.852	Pteropus_vampyrus
ENSORLG00000003540	fubp1	99	89.583	ENSPNYG00000004552	fubp1	99	89.744	Pundamilia_nyererei
ENSORLG00000003540	fubp1	99	79.787	ENSPNAG00000016207	fubp1	100	76.292	Pygocentrus_nattereri
ENSORLG00000003540	fubp1	71	78.396	ENSRNOG00000043370	Fubp1	99	68.487	Rattus_norvegicus
ENSORLG00000003540	fubp1	71	77.533	ENSRBIG00000042950	FUBP1	99	68.896	Rhinopithecus_bieti
ENSORLG00000003540	fubp1	71	77.533	ENSRROG00000043534	FUBP1	99	68.896	Rhinopithecus_roxellana
ENSORLG00000003540	fubp1	71	77.753	ENSSBOG00000027299	FUBP1	99	69.051	Saimiri_boliviensis_boliviensis
ENSORLG00000003540	fubp1	66	77.751	ENSSHAG00000005367	FUBP1	98	68.450	Sarcophilus_harrisii
ENSORLG00000003540	fubp1	99	79.167	ENSSFOG00015010213	fubp1	98	79.647	Scleropages_formosus
ENSORLG00000003540	fubp1	99	79.851	ENSSMAG00000012029	fubp1	98	80.000	Scophthalmus_maximus
ENSORLG00000003540	fubp1	99	88.144	ENSSDUG00000007383	fubp1	95	87.832	Seriola_dumerili
ENSORLG00000003540	fubp1	99	89.362	ENSSLDG00000022863	fubp1	99	90.344	Seriola_lalandi_dorsalis
ENSORLG00000003540	fubp1	71	86.207	ENSSARG00000011730	FUBP1	60	74.286	Sorex_araneus
ENSORLG00000003540	fubp1	99	61.314	ENSSPUG00000008389	FUBP1	100	63.250	Sphenodon_punctatus
ENSORLG00000003540	fubp1	99	89.331	ENSSPAG00000010161	fubp1	99	89.650	Stegastes_partitus
ENSORLG00000003540	fubp1	96	86.395	ENSTRUG00000004615	fubp1	85	85.034	Takifugu_rubripes
ENSORLG00000003540	fubp1	76	79.762	ENSTBEG00000017333	FUBP1	62	85.714	Tupaia_belangeri
ENSORLG00000003540	fubp1	71	77.753	ENSTTRG00000000096	FUBP1	98	68.896	Tursiops_truncatus
ENSORLG00000003540	fubp1	71	77.753	ENSVPAG00000004709	FUBP1	99	68.896	Vicugna_pacos
ENSORLG00000003540	fubp1	99	83.146	ENSXCOG00000019354	fubp1	99	78.964	Xiphophorus_couchianus
ENSORLG00000003540	fubp1	96	88.964	ENSXMAG00000007168	fubp1	100	87.667	Xiphophorus_maculatus